Clone Sequence Records
BO16438.3prime Sequence
532 bp (462 high quality bases) assembled on 2006-10-13
> BO16438.3prime
ATGGTCTAGAAAGCTTGCCCCGGCCACCTCCTCGCTGACAAAATCCAGCT
TGACCACCTCTGCGGGCAGGCACTCCTCCACGTCCACCTCGTTCTCCTGG
ACATTGATGCGATTGAGGGTCATGGACACGTCTGGTCCGCACTTTAAGCC
TGCTGGCGCCCCTGCTGGCGATCCTACTGTCGCCGCTGCCGCTGGAGGAT
TGGAGGTGCTAACCACATCGTCGGCAATCACCACCGTGGGCGAGAGTACT
GTTGGAACAGTGGACACTGCCGACACAACGGGCACCACGATCTGCGTCGA
CGAGCAGGTGGACACCATATGTGGCTGCTGCACCACTGTCGCCGTAGTCG
AAGTGGGCTGCTGGATAATGATGTTCTCCGTGATGGTGGGCGTGTTGTTG
GCCGTCGAGGCTGCAGCCTGGGCTGCCGCTAATGCCGCAGCCTTCTGCAT
CTGCTGGTACTGCTTAACAGTCACCGTCGTGCCCGTCGTAGTTGTATTAG
ACTGTGGATGCAGGATGATCTGCTTTGGCTGC
BO16438.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PF | 843 | CG33695-RF | 327..840 | 532..19 | 2570 | 100 | Minus |
CG33695-PA | 918 | CG33695-RA | 402..915 | 532..19 | 2570 | 100 | Minus |
CG33695-PC | 819 | CG33695-RC | 303..816 | 532..19 | 2570 | 100 | Minus |
CG33695-PD | 825 | CG33695-RD | 309..822 | 532..19 | 2570 | 100 | Minus |
CG33695-PE | 918 | CG33695-RE | 402..915 | 532..19 | 2570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RE | 1394 | CG33695-RE | 494..1007 | 532..19 | 2570 | 100 | Minus |
CG33695-RD | 1300 | CG33695-RD | 400..913 | 532..19 | 2570 | 100 | Minus |
CG33695-RC | 1430 | CG33695-RC | 395..908 | 532..19 | 2570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278947..11279460 | 532..19 | 2570 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 17:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GATE | 8507 | GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). | 4417..4459 | 156..194 | 106 | 79.1 | Plus |
BO16438.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:25 Download gff for
BO16438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-PE | 402..918 | 16..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:08 Download gff for
BO16438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 395..915 | 11..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:43 Download gff for
BO16438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RC | 395..915 | 11..532 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:43 Download gff for
BO16438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278947..11279467 | 11..532 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:08 Download gff for
BO16438.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278947..11279467 | 11..532 | 99 | | Minus |
BO16438.5prime Sequence
559 bp (471 high quality bases) assembled on 2006-10-13
> BO16438.5prime
GAAGTTATCAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGG
GGAAGTGGACGGACGAGGAGATCGACATGCTGCACTCGTCCATAATGCGC
TTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGT
TTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCA
TTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACG
CTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGT
ATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAA
AGCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACG
GTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGC
AGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGA
ACATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAG
CCACATATG
BO16438.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PA | 918 | CG33695-RA | 75..618 | 16..559 | 2720 | 100 | Plus |
CG33695-PE | 918 | CG33695-RE | 75..618 | 16..559 | 2720 | 100 | Plus |
CG33695-PF | 843 | CG33695-RF | 1..543 | 17..559 | 2715 | 100 | Plus |
CG33695-PC | 819 | CG33695-RC | 111..519 | 151..559 | 2045 | 100 | Plus |
CG33695-PD | 825 | CG33695-RD | 117..525 | 151..559 | 2045 | 100 | Plus |
CG33695-PC | 819 | CG33695-RC | 75..110 | 16..51 | 180 | 100 | Plus |
CG33695-PD | 825 | CG33695-RD | 81..116 | 16..51 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RE | 1394 | CG33695-RE | 167..710 | 16..559 | 2720 | 100 | Plus |
CG33695-RF | 1456 | CG33695-RF | 229..772 | 16..559 | 2720 | 100 | Plus |
CG33695-RD | 1300 | CG33695-RD | 208..616 | 151..559 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278755..11279163 | 151..559 | 2045 | 100 | Plus |
2L | 23513712 | 2L | 11278574..11278673 | 51..150 | 500 | 100 | Plus |
2L | 23513712 | 2L | 11278450..11278486 | 16..52 | 185 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 16:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 225..531 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 224..354 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 250..468 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 224..287 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 224..290 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 245..555 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 187..287 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 187..287 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 245..286 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 224..300 | 126 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2860 | 245..297 | 121 | 69.8 | Plus |
BO16438.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:25 Download gff for
BO16438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-PE | 75..618 | 16..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:28 Download gff for
BO16438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RF | 229..772 | 16..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:50 Download gff for
BO16438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RF | 229..772 | 16..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:50 Download gff for
BO16438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278450..11278485 | 16..51 | 100 | -> | Plus |
2L | 11278575..11278673 | 52..150 | 100 | -> | Plus |
2L | 11278755..11279163 | 151..559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:28 Download gff for
BO16438.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278450..11278485 | 16..51 | 100 | -> | Plus |
arm_2L | 11278575..11278673 | 52..150 | 100 | -> | Plus |
arm_2L | 11278755..11279163 | 151..559 | 100 | | Plus |
BO16438.complete Sequence
874 bp assembled on 2006-10-11
GenBank Submission: FJ633832
> BO16438.complete
GAAGTTATCAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGG
GGAAGTGGACGGACGAGGAGATCGACATGCTGCACTCGTCCATAATGCGC
TTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGT
TTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCA
TTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACG
CTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGT
ATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAA
AGCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACG
GTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGC
AGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGA
ACATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAG
CCACATATGGTGTCCACCTGCTCGTCGACGCAGATCGTGGTGCCCGTTGT
GTCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCCACGGTGGTGATTG
CCGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGCAGCGGCGACAGTA
GGATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCGGACCAGACGTGTC
CATGACCCTCAATCGCATCAATGTCCAGGAGAACGAGGTGGACGTGGAGG
AGTGCCTGCCCGCAGAGGTGGTCAAGCTGGATTTTGTCAGCGAGGAGGTG
GCCGGGGCAAGCTTTCTAGACCAT
BO16438.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RE | 918 | CG33695-PE | 75..915 | 16..856 | 4205 | 100 | Plus |
CG33695-RF | 843 | CG33695-PF | 1..840 | 17..856 | 4200 | 100 | Plus |
CG33695-RD | 825 | CG33695-PD | 117..822 | 151..856 | 3530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RE | 1394 | CG33695-RE | 167..1007 | 16..856 | 4205 | 100 | Plus |
CG33695-RF | 1456 | CG33695-RF | 229..1069 | 16..856 | 4205 | 100 | Plus |
CG33695-RD | 1300 | CG33695-RD | 208..913 | 151..856 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278755..11279460 | 151..856 | 3530 | 100 | Plus |
2L | 23513712 | 2L | 11278574..11278673 | 51..150 | 500 | 100 | Plus |
2L | 23513712 | 2L | 11278450..11278486 | 16..52 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 225..531 | 198 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 224..354 | 169 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 250..468 | 163 | 58.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 224..287 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 224..290 | 137 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 245..555 | 135 | 54 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 187..287 | 132 | 60.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 187..287 | 132 | 60.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 245..286 | 129 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 224..300 | 126 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2860 | 245..297 | 121 | 69.8 | Plus |
BO16438.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:59 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RE | 75..918 | 16..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:24 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RA | 6760..7607 | 16..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:19 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RF | 230..1069 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:00 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RA | 6760..7607 | 16..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:09 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RF | 230..1069 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:09 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278575..11278673 | 52..150 | 100 | -> | Plus |
2L | 11278451..11278485 | 17..51 | 100 | -> | Plus |
2L | 11278755..11279460 | 151..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:19 Download gff for
BO16438.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278575..11278673 | 52..150 | 100 | -> | Plus |
arm_2L | 11278451..11278485 | 17..51 | 100 | -> | Plus |
arm_2L | 11278755..11279460 | 151..858 | 99 | | Plus |
BO16438.pep Sequence
Translation from 16 to 874
> BO16438.pep
MQLHPNAESPSGKWTDEEIDMLHSSIMRFSDDLTKISLSIKNRTVSQIRQ
ALKKKAFEDAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQP
IVQHVQLVAQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAA
STANNTPTITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVST
VPTVLSPTVVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNR
INVQENEVDVEECLPAEVVKLDFVSEEVAGASFLDH
BO16438.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-PF | 280 | CG33695-PF | 1..280 | 1..280 | 1403 | 100 | Plus |
CG33695-PE | 305 | CG33695-PE | 26..305 | 1..280 | 1403 | 100 | Plus |
CG33695-PC | 272 | CG33695-PC | 26..272 | 1..280 | 1192 | 88.2 | Plus |
CG33695-PD | 274 | CG33695-PD | 28..274 | 1..280 | 1192 | 88.2 | Plus |