Clone BO16438 Report

Search the DGRC for BO16438

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG33695-RF
Protein status:BO16438.pep: validated not full length
Sequenced Size:874

Clone Sequence Records

BO16438.3prime Sequence

532 bp (462 high quality bases) assembled on 2006-10-13

> BO16438.3prime
ATGGTCTAGAAAGCTTGCCCCGGCCACCTCCTCGCTGACAAAATCCAGCT
TGACCACCTCTGCGGGCAGGCACTCCTCCACGTCCACCTCGTTCTCCTGG
ACATTGATGCGATTGAGGGTCATGGACACGTCTGGTCCGCACTTTAAGCC
TGCTGGCGCCCCTGCTGGCGATCCTACTGTCGCCGCTGCCGCTGGAGGAT
TGGAGGTGCTAACCACATCGTCGGCAATCACCACCGTGGGCGAGAGTACT
GTTGGAACAGTGGACACTGCCGACACAACGGGCACCACGATCTGCGTCGA
CGAGCAGGTGGACACCATATGTGGCTGCTGCACCACTGTCGCCGTAGTCG
AAGTGGGCTGCTGGATAATGATGTTCTCCGTGATGGTGGGCGTGTTGTTG
GCCGTCGAGGCTGCAGCCTGGGCTGCCGCTAATGCCGCAGCCTTCTGCAT
CTGCTGGTACTGCTTAACAGTCACCGTCGTGCCCGTCGTAGTTGTATTAG
ACTGTGGATGCAGGATGATCTGCTTTGGCTGC

BO16438.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PF 843 CG33695-RF 327..840 532..19 2570 100 Minus
CG33695-PA 918 CG33695-RA 402..915 532..19 2570 100 Minus
CG33695-PC 819 CG33695-RC 303..816 532..19 2570 100 Minus
CG33695-PD 825 CG33695-RD 309..822 532..19 2570 100 Minus
CG33695-PE 918 CG33695-RE 402..915 532..19 2570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 494..1007 532..19 2570 100 Minus
CG33695-RD 1300 CG33695-RD 400..913 532..19 2570 100 Minus
CG33695-RC 1430 CG33695-RC 395..908 532..19 2570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278947..11279460 532..19 2570 100 Minus
Blast to na_te.dros performed 2015-02-02 17:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 4417..4459 156..194 106 79.1 Plus

BO16438.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:25 Download gff for BO16438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-PE 402..918 16..532 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:08 Download gff for BO16438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 395..915 11..532 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:43 Download gff for BO16438.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RC 395..915 11..532 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:43 Download gff for BO16438.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278947..11279467 11..532 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:08 Download gff for BO16438.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278947..11279467 11..532 99   Minus

BO16438.5prime Sequence

559 bp (471 high quality bases) assembled on 2006-10-13

> BO16438.5prime
GAAGTTATCAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGG
GGAAGTGGACGGACGAGGAGATCGACATGCTGCACTCGTCCATAATGCGC
TTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGT
TTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCA
TTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACG
CTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGT
ATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAA
AGCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACG
GTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGC
AGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGA
ACATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAG
CCACATATG

BO16438.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PA 918 CG33695-RA 75..618 16..559 2720 100 Plus
CG33695-PE 918 CG33695-RE 75..618 16..559 2720 100 Plus
CG33695-PF 843 CG33695-RF 1..543 17..559 2715 100 Plus
CG33695-PC 819 CG33695-RC 111..519 151..559 2045 100 Plus
CG33695-PD 825 CG33695-RD 117..525 151..559 2045 100 Plus
CG33695-PC 819 CG33695-RC 75..110 16..51 180 100 Plus
CG33695-PD 825 CG33695-RD 81..116 16..51 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 167..710 16..559 2720 100 Plus
CG33695-RF 1456 CG33695-RF 229..772 16..559 2720 100 Plus
CG33695-RD 1300 CG33695-RD 208..616 151..559 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279163 151..559 2045 100 Plus
2L 23513712 2L 11278574..11278673 51..150 500 100 Plus
2L 23513712 2L 11278450..11278486 16..52 185 100 Plus
Blast to na_te.dros performed 2015-02-10 16:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 225..531 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 224..354 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 250..468 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 224..287 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 224..290 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 245..555 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 187..287 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 187..287 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 245..286 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 224..300 126 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 245..297 121 69.8 Plus

BO16438.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:25 Download gff for BO16438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-PE 75..618 16..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:28 Download gff for BO16438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..772 16..559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:50 Download gff for BO16438.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..772 16..559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:50 Download gff for BO16438.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278450..11278485 16..51 100 -> Plus
2L 11278575..11278673 52..150 100 -> Plus
2L 11278755..11279163 151..559 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:28 Download gff for BO16438.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278450..11278485 16..51 100 -> Plus
arm_2L 11278575..11278673 52..150 100 -> Plus
arm_2L 11278755..11279163 151..559 100   Plus

BO16438.complete Sequence

874 bp assembled on 2006-10-11

GenBank Submission: FJ633832

> BO16438.complete
GAAGTTATCAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGG
GGAAGTGGACGGACGAGGAGATCGACATGCTGCACTCGTCCATAATGCGC
TTCTCCGACGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGT
TTCTCAGATCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCA
TTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACG
CTGCCACAACAGCAGCCGCAGCAGCCCCTTCAGCAGCCACCTCCTCAAGT
ATTCAAGTCACAGCCAATCGTGCAGCACGTACAGCTGGTGGCGCAGCCAA
AGCAGATCATCCTGCATCCACAGTCTAATACAACTACGACGGGCACGACG
GTGACTGTTAAGCAGTACCAGCAGATGCAGAAGGCTGCGGCATTAGCGGC
AGCCCAGGCTGCAGCCTCGACGGCCAACAACACGCCCACCATCACGGAGA
ACATCATTATCCAGCAGCCCACTTCGACTACGGCGACAGTGGTGCAGCAG
CCACATATGGTGTCCACCTGCTCGTCGACGCAGATCGTGGTGCCCGTTGT
GTCGGCAGTGTCCACTGTTCCAACAGTACTCTCGCCCACGGTGGTGATTG
CCGACGATGTGGTTAGCACCTCCAATCCTCCAGCGGCAGCGGCGACAGTA
GGATCGCCAGCAGGGGCGCCAGCAGGCTTAAAGTGCGGACCAGACGTGTC
CATGACCCTCAATCGCATCAATGTCCAGGAGAACGAGGTGGACGTGGAGG
AGTGCCTGCCCGCAGAGGTGGTCAAGCTGGATTTTGTCAGCGAGGAGGTG
GCCGGGGCAAGCTTTCTAGACCAT

BO16438.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 918 CG33695-PE 75..915 16..856 4205 100 Plus
CG33695-RF 843 CG33695-PF 1..840 17..856 4200 100 Plus
CG33695-RD 825 CG33695-PD 117..822 151..856 3530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 167..1007 16..856 4205 100 Plus
CG33695-RF 1456 CG33695-RF 229..1069 16..856 4205 100 Plus
CG33695-RD 1300 CG33695-RD 208..913 151..856 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279460 151..856 3530 100 Plus
2L 23513712 2L 11278574..11278673 51..150 500 100 Plus
2L 23513712 2L 11278450..11278486 16..52 185 100 Plus
Blast to na_te.dros performed 2014-11-28 00:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 225..531 198 55.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 224..354 169 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6941 250..468 163 58.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 224..287 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 224..290 137 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2602 245..555 135 54 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 187..287 132 60.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 187..287 132 60.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 245..286 129 78.6 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 224..300 126 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2860 245..297 121 69.8 Plus

BO16438.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:59 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RE 75..918 16..859 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:24 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RA 6760..7607 16..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:19 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 230..1069 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:00 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RA 6760..7607 16..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:09 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 230..1069 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:09 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11278575..11278673 52..150 100 -> Plus
2L 11278451..11278485 17..51 100 -> Plus
2L 11278755..11279460 151..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:19 Download gff for BO16438.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278575..11278673 52..150 100 -> Plus
arm_2L 11278451..11278485 17..51 100 -> Plus
arm_2L 11278755..11279460 151..858 99   Plus

BO16438.pep Sequence

Translation from 16 to 874

> BO16438.pep
MQLHPNAESPSGKWTDEEIDMLHSSIMRFSDDLTKISLSIKNRTVSQIRQ
ALKKKAFEDAGIPAKQVPVQQVQHVLQTLPQQQPQQPLQQPPPQVFKSQP
IVQHVQLVAQPKQIILHPQSNTTTTGTTVTVKQYQQMQKAAALAAAQAAA
STANNTPTITENIIIQQPTSTTATVVQQPHMVSTCSSTQIVVPVVSAVST
VPTVLSPTVVIADDVVSTSNPPAAAATVGSPAGAPAGLKCGPDVSMTLNR
INVQENEVDVEECLPAEVVKLDFVSEEVAGASFLDH

BO16438.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-PF 280 CG33695-PF 1..280 1..280 1403 100 Plus
CG33695-PE 305 CG33695-PE 26..305 1..280 1403 100 Plus
CG33695-PC 272 CG33695-PC 26..272 1..280 1192 88.2 Plus
CG33695-PD 274 CG33695-PD 28..274 1..280 1192 88.2 Plus