Clone BO16442 Report

Search the DGRC for BO16442

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG1116-RB
Protein status:BO16442.pep: validated not full length
Sequenced Size:1114

Clone Sequence Records

BO16442.3prime Sequence

651 bp (593 high quality bases) assembled on 2006-10-13

> BO16442.3prime
ATGGTCTAGAAAGCTTGCCTTTATAAGCAGGTTGAATGTCTGGTTTGGAG
CATAAATCTGGAGAGGATTCGCAGCGTAGACGGTCACGGGCAGATTCCAT
ACCATCGTCTCCACGGGCATTTCAGACGGTGCTTTTAGCTCGCCGGACTC
CGGATTCGGAATGCCAAAGTCAATCAAAGTTGTGGTCACAAACTCGAAAT
GCAATCGCCATCGCACGTCGACGAGGTCTGTGCGGAATGTTGGTGTTACG
TGCAGCGGAATGGGTACCACGACCTGGGTCTGCAGCGTTGCGTAGCACAC
TTGGTGGGAGGTGGAAATGGTCGAAAGTTTCCCGGTTGGCTCAGGCGCCT
CCTTAACCTTTGAGCTAGCCGATGTGGCCGACTTGTGGAGGTTATCTGCC
AACACTCCGCTAGCTATGCTGGCCATATCAAAGGAGTTCATCGAGGAGAC
ATCATCGCCCGTCGAGGATTGCGACTGCAGCTGGTGATTTTGCACTGGTT
GCGGTCGGATGGAAAGCTCCTGCTGCTGCAGCTTTACCGAAAACTGGACG
CAGCGCACCTTTCGGGGGTTAACGCCGGGATCAAAGTCCAGGCTGCCCAC
AATGTCCTCACCGAGCTTATACGCTGGCTTTGACAAACAAAAGCGGCCAA
C

BO16442.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-PB 1083 CG1116-RB 448..1080 651..19 3090 99.5 Minus
CG1116-PA 1329 CG1116-RA 694..1326 651..19 3090 99.5 Minus
CG1116-PC 1329 CG1116-RC 694..1326 651..19 3090 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1639 CG1116-RD 747..1379 651..19 3120 99.5 Minus
CG1116-RA 1570 CG1116-RA 744..1376 651..19 3120 99.5 Minus
CG1116-RB 1633 CG1116-RB 807..1439 651..19 3120 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5220747..5221288 560..19 2695 99.8 Minus
3R 32079331 3R 5220593..5220687 651..557 445 97.9 Minus
Blast to na_te.dros performed on 2015-02-06 10:09:57 has no hits.

BO16442.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:28 Download gff for BO16442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-PC 694..1329 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:44 Download gff for BO16442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 807..1442 15..651 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:14 Download gff for BO16442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 807..1442 15..651 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:14 Download gff for BO16442.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5220593..5220685 559..651 97 -> Minus
3R 5220749..5221290 17..558 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:44 Download gff for BO16442.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1046315..1046407 559..651 97 -> Minus
arm_3R 1046471..1047012 17..558 99 <- Minus

BO16442.5prime Sequence

718 bp (591 high quality bases) assembled on 2006-10-13

> BO16442.5prime
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCCGCACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGNCAGCATA
GCTAGCGGAGTGTTGGCA

BO16442.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-PB 1083 CG1116-RB 1..596 17..612 2980 100 Plus
CG1116-PA 1329 CG1116-RA 247..842 17..612 2980 100 Plus
CG1116-PC 1329 CG1116-RC 247..842 17..612 2980 100 Plus
CG1116-PB 1083 CG1116-RB 600..702 616..718 496 99 Plus
CG1116-PA 1329 CG1116-RA 846..948 616..718 496 99 Plus
CG1116-PC 1329 CG1116-RC 846..948 616..718 496 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1639 CG1116-RD 300..1001 17..718 3454 99.6 Plus
CG1116-RA 1570 CG1116-RA 297..998 17..718 3454 99.6 Plus
CG1116-RB 1633 CG1116-RB 360..1061 17..718 3454 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5220199..5220470 135..406 1360 100 Plus
3R 32079331 3R 5220534..5220687 405..558 770 100 Plus
3R 32079331 3R 5220747..5220910 555..718 764 97.6 Plus
3R 32079331 3R 5220016..5220133 17..134 590 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:10:27 has no hits.

BO16442.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:28 Download gff for BO16442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-PC 239..947 8..717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:26 Download gff for BO16442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 352..1060 8..717 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:03 Download gff for BO16442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 352..1060 8..717 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:03 Download gff for BO16442.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5220008..5220133 8..134 96 -> Plus
3R 5220199..5220470 135..406 100 -> Plus
3R 5220536..5220685 407..556 100 -> Plus
3R 5220749..5220909 557..717 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:26 Download gff for BO16442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1045730..1045855 8..134 96 -> Plus
arm_3R 1045921..1046192 135..406 100 -> Plus
arm_3R 1046258..1046407 407..556 100 -> Plus
arm_3R 1046471..1046631 557..717 98   Plus

BO16442.complete Sequence

1114 bp assembled on 2006-10-11

GenBank Submission: FJ633833

> BO16442.complete
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATA
GCTAGCGGAGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAG
CTCAAAGGTTAAGGAGGCGCCTGAGCCAACCGGGAAACTTTCGACCATTT
CCACCTCCCACCAAGTGTGCTACGCAACGCTGCAGACCCAGGTCGTGGTA
CCCATTCCGCTGCACGTAACACCAACATTCCGCACAGACCTCGTCGACGT
GCGATGGCGATTGCATTTCGAGTTTGTGACCACAACTTTGATTGACTTTG
GCATTCCGAATCCGGAGTCCGGCGAGCTAAAAGCACCGTCTGAAATGCCC
GTGGAGACGATGGTATGGAATCTGCCCGTGACCGTCTACGCTGCGAATCC
TCTCCAGATTTATGCTCCAAACCAGACATTCAACCTGCTTATAAAGGCAA
GCTTTCTAGACCAT

BO16442.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1332 CG1116-PD 250..1329 17..1096 5385 99.9 Plus
CG1116-RA 1329 CG1116-PA 247..1326 17..1096 5385 99.9 Plus
CG1116-RB 1083 CG1116-PB 1..1080 17..1096 5385 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-RD 1639 CG1116-RD 300..1379 17..1096 5385 99.9 Plus
CG1116-RA 1570 CG1116-RA 297..1376 17..1096 5385 99.9 Plus
CG1116-RB 1633 CG1116-RB 360..1439 17..1096 5385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5220747..5221288 555..1096 2695 99.8 Plus
3R 32079331 3R 5220199..5220470 135..406 1360 100 Plus
3R 32079331 3R 5220534..5220687 405..558 770 100 Plus
3R 32079331 3R 5220016..5220133 17..134 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:11:29 has no hits.

BO16442.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:26 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RC 239..1329 8..1100 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:03 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RC 278..1368 8..1100 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:33 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 360..1439 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:27 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RC 278..1368 8..1100 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:52 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
CG1116-RB 360..1439 17..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:52 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5220016..5220133 17..134 100 -> Plus
3R 5220199..5220470 135..406 100 -> Plus
3R 5220536..5220685 407..556 100 -> Plus
3R 5220749..5221288 557..1098 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:33 Download gff for BO16442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1045738..1045855 17..134 100 -> Plus
arm_3R 1045921..1046192 135..406 100 -> Plus
arm_3R 1046258..1046407 407..556 100 -> Plus
arm_3R 1046471..1047010 557..1098 99   Plus

BO16442.pep Sequence

Translation from 16 to 1114

> BO16442.pep
MIGRTALDAVTQAPGEVIVATKPKILFCDLRLQPGETKMYFFNEFIPRDG
PPTYRGHNIRYFYKITIATQRVKSKVQTLAVPIRVLPIPIISRPDELPVT
VETNEELAPTNPFLEKREISELEISWHHLKNVTARRAPKFYRISNKRGFV
GRFCLFKPAYKLGEDIVGSLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQ
PVQNHQLQSQSSTGDDVSSMNSFDMASIASGVLADNLHKSATSASSKVKE
APEPTGKLSTISTSHQVCYATLQTQVVVPIPLHVTPTFRTDLVDVRWRLH
FEFVTTTLIDFGIPNPESGELKAPSEMPVETMVWNLPVTVYAANPLQIYA
PNQTFNLLIKASFLDH

BO16442.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1116-PB 360 CG1116-PB 1..360 1..360 1869 100 Plus
CG1116-PA 442 CG1116-PA 83..442 1..360 1869 100 Plus
CG1116-PD 443 CG1116-PD 84..443 1..360 1869 100 Plus