Clone Sequence Records
BO16442.3prime Sequence
651 bp (593 high quality bases) assembled on 2006-10-13
> BO16442.3prime
ATGGTCTAGAAAGCTTGCCTTTATAAGCAGGTTGAATGTCTGGTTTGGAG
CATAAATCTGGAGAGGATTCGCAGCGTAGACGGTCACGGGCAGATTCCAT
ACCATCGTCTCCACGGGCATTTCAGACGGTGCTTTTAGCTCGCCGGACTC
CGGATTCGGAATGCCAAAGTCAATCAAAGTTGTGGTCACAAACTCGAAAT
GCAATCGCCATCGCACGTCGACGAGGTCTGTGCGGAATGTTGGTGTTACG
TGCAGCGGAATGGGTACCACGACCTGGGTCTGCAGCGTTGCGTAGCACAC
TTGGTGGGAGGTGGAAATGGTCGAAAGTTTCCCGGTTGGCTCAGGCGCCT
CCTTAACCTTTGAGCTAGCCGATGTGGCCGACTTGTGGAGGTTATCTGCC
AACACTCCGCTAGCTATGCTGGCCATATCAAAGGAGTTCATCGAGGAGAC
ATCATCGCCCGTCGAGGATTGCGACTGCAGCTGGTGATTTTGCACTGGTT
GCGGTCGGATGGAAAGCTCCTGCTGCTGCAGCTTTACCGAAAACTGGACG
CAGCGCACCTTTCGGGGGTTAACGCCGGGATCAAAGTCCAGGCTGCCCAC
AATGTCCTCACCGAGCTTATACGCTGGCTTTGACAAACAAAAGCGGCCAA
C
BO16442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-PB | 1083 | CG1116-RB | 448..1080 | 651..19 | 3090 | 99.5 | Minus |
CG1116-PA | 1329 | CG1116-RA | 694..1326 | 651..19 | 3090 | 99.5 | Minus |
CG1116-PC | 1329 | CG1116-RC | 694..1326 | 651..19 | 3090 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1639 | CG1116-RD | 747..1379 | 651..19 | 3120 | 99.5 | Minus |
CG1116-RA | 1570 | CG1116-RA | 744..1376 | 651..19 | 3120 | 99.5 | Minus |
CG1116-RB | 1633 | CG1116-RB | 807..1439 | 651..19 | 3120 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5220747..5221288 | 560..19 | 2695 | 99.8 | Minus |
3R | 32079331 | 3R | 5220593..5220687 | 651..557 | 445 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:09:57 has no hits.
BO16442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:28 Download gff for
BO16442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-PC | 694..1329 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:44 Download gff for
BO16442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 807..1442 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:14 Download gff for
BO16442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 807..1442 | 15..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:14 Download gff for
BO16442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5220593..5220685 | 559..651 | 97 | -> | Minus |
3R | 5220749..5221290 | 17..558 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:44 Download gff for
BO16442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1046315..1046407 | 559..651 | 97 | -> | Minus |
arm_3R | 1046471..1047012 | 17..558 | 99 | <- | Minus |
BO16442.5prime Sequence
718 bp (591 high quality bases) assembled on 2006-10-13
> BO16442.5prime
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCCGCACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGNCAGCATA
GCTAGCGGAGTGTTGGCA
BO16442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-PB | 1083 | CG1116-RB | 1..596 | 17..612 | 2980 | 100 | Plus |
CG1116-PA | 1329 | CG1116-RA | 247..842 | 17..612 | 2980 | 100 | Plus |
CG1116-PC | 1329 | CG1116-RC | 247..842 | 17..612 | 2980 | 100 | Plus |
CG1116-PB | 1083 | CG1116-RB | 600..702 | 616..718 | 496 | 99 | Plus |
CG1116-PA | 1329 | CG1116-RA | 846..948 | 616..718 | 496 | 99 | Plus |
CG1116-PC | 1329 | CG1116-RC | 846..948 | 616..718 | 496 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1639 | CG1116-RD | 300..1001 | 17..718 | 3454 | 99.6 | Plus |
CG1116-RA | 1570 | CG1116-RA | 297..998 | 17..718 | 3454 | 99.6 | Plus |
CG1116-RB | 1633 | CG1116-RB | 360..1061 | 17..718 | 3454 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5220199..5220470 | 135..406 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 5220534..5220687 | 405..558 | 770 | 100 | Plus |
3R | 32079331 | 3R | 5220747..5220910 | 555..718 | 764 | 97.6 | Plus |
3R | 32079331 | 3R | 5220016..5220133 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:10:27 has no hits.
BO16442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:28 Download gff for
BO16442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-PC | 239..947 | 8..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:26 Download gff for
BO16442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 352..1060 | 8..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:03 Download gff for
BO16442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 352..1060 | 8..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:03 Download gff for
BO16442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5220008..5220133 | 8..134 | 96 | -> | Plus |
3R | 5220199..5220470 | 135..406 | 100 | -> | Plus |
3R | 5220536..5220685 | 407..556 | 100 | -> | Plus |
3R | 5220749..5220909 | 557..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:26 Download gff for
BO16442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1045730..1045855 | 8..134 | 96 | -> | Plus |
arm_3R | 1045921..1046192 | 135..406 | 100 | -> | Plus |
arm_3R | 1046258..1046407 | 407..556 | 100 | -> | Plus |
arm_3R | 1046471..1046631 | 557..717 | 98 | | Plus |
BO16442.complete Sequence
1114 bp assembled on 2006-10-11
GenBank Submission: FJ633833
> BO16442.complete
GAAGTTATCAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGC
AGGCGCCGGGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGC
GACCTGCGCCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATT
CATTCCCCGCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACT
TCTACAAGATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACG
CTGGCCGTTCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGA
CGAACTTCCCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATC
CGTTCCTGGAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCAC
CTTAAGAACGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAA
CAAACGCGGCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGC
TCGGTGAGGACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCC
CGAAAGGTGCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCT
TTCCATCCGACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCT
CGACGGGCGATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATA
GCTAGCGGAGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCGGCTAG
CTCAAAGGTTAAGGAGGCGCCTGAGCCAACCGGGAAACTTTCGACCATTT
CCACCTCCCACCAAGTGTGCTACGCAACGCTGCAGACCCAGGTCGTGGTA
CCCATTCCGCTGCACGTAACACCAACATTCCGCACAGACCTCGTCGACGT
GCGATGGCGATTGCATTTCGAGTTTGTGACCACAACTTTGATTGACTTTG
GCATTCCGAATCCGGAGTCCGGCGAGCTAAAAGCACCGTCTGAAATGCCC
GTGGAGACGATGGTATGGAATCTGCCCGTGACCGTCTACGCTGCGAATCC
TCTCCAGATTTATGCTCCAAACCAGACATTCAACCTGCTTATAAAGGCAA
GCTTTCTAGACCAT
BO16442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1332 | CG1116-PD | 250..1329 | 17..1096 | 5385 | 99.9 | Plus |
CG1116-RA | 1329 | CG1116-PA | 247..1326 | 17..1096 | 5385 | 99.9 | Plus |
CG1116-RB | 1083 | CG1116-PB | 1..1080 | 17..1096 | 5385 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-RD | 1639 | CG1116-RD | 300..1379 | 17..1096 | 5385 | 99.9 | Plus |
CG1116-RA | 1570 | CG1116-RA | 297..1376 | 17..1096 | 5385 | 99.9 | Plus |
CG1116-RB | 1633 | CG1116-RB | 360..1439 | 17..1096 | 5385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5220747..5221288 | 555..1096 | 2695 | 99.8 | Plus |
3R | 32079331 | 3R | 5220199..5220470 | 135..406 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 5220534..5220687 | 405..558 | 770 | 100 | Plus |
3R | 32079331 | 3R | 5220016..5220133 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:11:29 has no hits.
BO16442.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:26 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RC | 239..1329 | 8..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:03 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RC | 278..1368 | 8..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:33 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 360..1439 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:27 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RC | 278..1368 | 8..1100 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:52 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1116-RB | 360..1439 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:52 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5220016..5220133 | 17..134 | 100 | -> | Plus |
3R | 5220199..5220470 | 135..406 | 100 | -> | Plus |
3R | 5220536..5220685 | 407..556 | 100 | -> | Plus |
3R | 5220749..5221288 | 557..1098 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:33 Download gff for
BO16442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1045738..1045855 | 17..134 | 100 | -> | Plus |
arm_3R | 1045921..1046192 | 135..406 | 100 | -> | Plus |
arm_3R | 1046258..1046407 | 407..556 | 100 | -> | Plus |
arm_3R | 1046471..1047010 | 557..1098 | 99 | | Plus |
BO16442.pep Sequence
Translation from 16 to 1114
> BO16442.pep
MIGRTALDAVTQAPGEVIVATKPKILFCDLRLQPGETKMYFFNEFIPRDG
PPTYRGHNIRYFYKITIATQRVKSKVQTLAVPIRVLPIPIISRPDELPVT
VETNEELAPTNPFLEKREISELEISWHHLKNVTARRAPKFYRISNKRGFV
GRFCLFKPAYKLGEDIVGSLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQ
PVQNHQLQSQSSTGDDVSSMNSFDMASIASGVLADNLHKSATSASSKVKE
APEPTGKLSTISTSHQVCYATLQTQVVVPIPLHVTPTFRTDLVDVRWRLH
FEFVTTTLIDFGIPNPESGELKAPSEMPVETMVWNLPVTVYAANPLQIYA
PNQTFNLLIKASFLDH
BO16442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1116-PB | 360 | CG1116-PB | 1..360 | 1..360 | 1869 | 100 | Plus |
CG1116-PA | 442 | CG1116-PA | 83..442 | 1..360 | 1869 | 100 | Plus |
CG1116-PD | 443 | CG1116-PD | 84..443 | 1..360 | 1869 | 100 | Plus |