Clone BO16443 Report

Search the DGRC for BO16443

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5073-RA
Protein status:BO16443.pep: validated full length
Sequenced Size:658

Clone Sequence Records

BO16443.3prime Sequence

654 bp (584 high quality bases) assembled on 2006-10-13

> BO16443.3prime
ATGGTCTAGAAAGCTTGCCTCGCATTTACTCTTAACTGTCAGCATTATTT
GATTCGTTTGCCGTATTAGAAAAAGTGCACTTATGAATACTGCATTCGGT
TGTCCTTCTTTGAAGTACTCCTTCAGCGTTGTGCTGAACTTCTTGGAATA
TTTGACGAACTCCTTCTTACGCTGCTCCACAGCCTGCTTGCCCGTTACGC
CAGGTATAAACGAGCCGATCTCGTTGACCACATCGAGTAGTTTCTTTATG
GCGCTGGCGATTTCCTTGATGGTCTCCAGGAAGGTCTTCCTGTCGTTTAT
CTCATCGGGTATGCGGCTGAGGATCACCTTGAGAGCCACGGACTTACGAT
TGAGCTCCTGGAAGGGCTCCTCCGTGCGCGTCAAGCGGTATTCATTGAGG
TCCGCTTCCGTAATTTTGCCCTGCAATCGGAGCACGGCCTCGTTTAGGTT
AACATTCAGATCGGCCCGCCGCACAATTGTGGCTACGAGGTCATAGCAGA
AGCCCGGATTGTTCTGCTCCGACTTGAGAATGGCGGAGCGCAGAGATTGG
GCAGCGCCAACGTCGCGTCGCTCGAGCTGGGAGAAAATGGGCCGCAGTAT
GACGGGCAGAACGAGAGACGACGTGGGCTCGCCCATTGTCATGTCGACTG
ATAA

BO16443.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5073-PA 627 CG5073-RA 1..624 642..19 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 1589 CG5073-RA 196..819 642..19 3120 100 Minus
CG6136-RD 2071 CG6136-RD 1..61 582..642 305 100 Plus
CG6136-RC 2177 CG6136-RC 1..61 582..642 305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15372392..15372572 579..399 905 100 Minus
3R 32079331 3R 15372849..15373013 265..101 825 100 Minus
3R 32079331 3R 15372631..15372764 398..265 670 100 Minus
3R 32079331 3R 15373386..15373467 100..19 410 100 Minus
3R 32079331 3R 15372152..15372217 642..577 330 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:48:33 has no hits.

BO16443.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:30 Download gff for BO16443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-PA 1..627 18..642 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:31 Download gff for BO16443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 189..819 19..649 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:32 Download gff for BO16443.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 189..819 19..649 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:32 Download gff for BO16443.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15372395..15372572 399..576 100 -> Minus
3R 15372631..15372763 266..398 100 -> Minus
3R 15372849..15373013 101..265 100 -> Minus
3R 15373386..15373467 19..100 100   Minus
3R 15372145..15372217 577..649 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:31 Download gff for BO16443.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11197867..11197939 577..649 95 -> Minus
arm_3R 11198117..11198294 399..576 100 -> Minus
arm_3R 11198353..11198485 266..398 100 -> Minus
arm_3R 11198571..11198735 101..265 100 -> Minus
arm_3R 11199108..11199189 19..100 100   Minus

BO16443.5prime Sequence

656 bp (602 high quality bases) assembled on 2006-10-13

> BO16443.5prime
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGGGCAGCTTTC
TAGACC

BO16443.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5073-PA 627 CG5073-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 1589 CG5073-RA 196..819 17..640 3120 100 Plus
CG6136-RD 2071 CG6136-RD 1..61 77..17 305 100 Minus
CG6136-RC 2177 CG6136-RC 1..61 77..17 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15372392..15372572 80..260 905 100 Plus
3R 32079331 3R 15372849..15373013 394..558 825 100 Plus
3R 32079331 3R 15372631..15372764 261..394 670 100 Plus
3R 32079331 3R 15373386..15373467 559..640 410 100 Plus
3R 32079331 3R 15372152..15372217 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:27:05 has no hits.

BO16443.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:31 Download gff for BO16443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-PA 1..627 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:36 Download gff for BO16443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 189..822 10..645 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:00 Download gff for BO16443.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 189..822 10..645 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:00 Download gff for BO16443.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15372145..15372217 10..82 95 -> Plus
3R 15372395..15372572 83..260 100 -> Plus
3R 15372631..15372763 261..393 100 -> Plus
3R 15372849..15373013 394..558 100 -> Plus
3R 15373386..15373470 559..645 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:36 Download gff for BO16443.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11199108..11199192 559..645 96   Plus
arm_3R 11197867..11197939 10..82 95 -> Plus
arm_3R 11198117..11198294 83..260 100 -> Plus
arm_3R 11198353..11198485 261..393 100 -> Plus
arm_3R 11198571..11198735 394..558 100 -> Plus

BO16443.complete Sequence

658 bp assembled on 2006-10-11

GenBank Submission: FJ633834

> BO16443.complete
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGGCAAGCTTTC
TAGACCAT

BO16443.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 627 CG5073-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-RA 1589 CG5073-RA 196..819 17..640 3120 100 Plus
CG6136-RD 2071 CG6136-RD 1..61 77..17 305 100 Minus
CG6136-RC 2177 CG6136-RC 1..61 77..17 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15372392..15372572 80..260 905 100 Plus
3R 32079331 3R 15372849..15373013 394..558 825 100 Plus
3R 32079331 3R 15372631..15372764 261..394 670 100 Plus
3R 32079331 3R 15373386..15373467 559..640 410 100 Plus
3R 32079331 3R 15372152..15372217 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:05:54 has no hits.

BO16443.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:28 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 1..627 17..641 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:05 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 187..817 10..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:29 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 196..819 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:29 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
CG5073-RA 187..817 10..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:53 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
Ccm3-RA 196..819 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:53 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15372152..15372217 17..82 100 -> Plus
3R 15372395..15372572 83..260 100 -> Plus
3R 15372631..15372763 261..393 100 -> Plus
3R 15372849..15373013 394..558 100 -> Plus
3R 15373386..15373467 559..642 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:29 Download gff for BO16443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11197874..11197939 17..82 100 -> Plus
arm_3R 11198117..11198294 83..260 100 -> Plus
arm_3R 11198353..11198485 261..393 100 -> Plus
arm_3R 11198571..11198735 394..558 100 -> Plus
arm_3R 11199108..11199189 559..642 97   Plus

BO16443.pep Sequence

Translation from 16 to 658

> BO16443.pep
MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY
DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK
SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT
GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM
LTVKSKCEASFLDH

BO16443.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ccm3-PA 208 CG5073-PA 1..208 1..208 1026 100 Plus