Clone Sequence Records
BO16443.3prime Sequence
654 bp (584 high quality bases) assembled on 2006-10-13
> BO16443.3prime
ATGGTCTAGAAAGCTTGCCTCGCATTTACTCTTAACTGTCAGCATTATTT
GATTCGTTTGCCGTATTAGAAAAAGTGCACTTATGAATACTGCATTCGGT
TGTCCTTCTTTGAAGTACTCCTTCAGCGTTGTGCTGAACTTCTTGGAATA
TTTGACGAACTCCTTCTTACGCTGCTCCACAGCCTGCTTGCCCGTTACGC
CAGGTATAAACGAGCCGATCTCGTTGACCACATCGAGTAGTTTCTTTATG
GCGCTGGCGATTTCCTTGATGGTCTCCAGGAAGGTCTTCCTGTCGTTTAT
CTCATCGGGTATGCGGCTGAGGATCACCTTGAGAGCCACGGACTTACGAT
TGAGCTCCTGGAAGGGCTCCTCCGTGCGCGTCAAGCGGTATTCATTGAGG
TCCGCTTCCGTAATTTTGCCCTGCAATCGGAGCACGGCCTCGTTTAGGTT
AACATTCAGATCGGCCCGCCGCACAATTGTGGCTACGAGGTCATAGCAGA
AGCCCGGATTGTTCTGCTCCGACTTGAGAATGGCGGAGCGCAGAGATTGG
GCAGCGCCAACGTCGCGTCGCTCGAGCTGGGAGAAAATGGGCCGCAGTAT
GACGGGCAGAACGAGAGACGACGTGGGCTCGCCCATTGTCATGTCGACTG
ATAA
BO16443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5073-PA | 627 | CG5073-RA | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 1589 | CG5073-RA | 196..819 | 642..19 | 3120 | 100 | Minus |
CG6136-RD | 2071 | CG6136-RD | 1..61 | 582..642 | 305 | 100 | Plus |
CG6136-RC | 2177 | CG6136-RC | 1..61 | 582..642 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15372392..15372572 | 579..399 | 905 | 100 | Minus |
3R | 32079331 | 3R | 15372849..15373013 | 265..101 | 825 | 100 | Minus |
3R | 32079331 | 3R | 15372631..15372764 | 398..265 | 670 | 100 | Minus |
3R | 32079331 | 3R | 15373386..15373467 | 100..19 | 410 | 100 | Minus |
3R | 32079331 | 3R | 15372152..15372217 | 642..577 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:48:33 has no hits.
BO16443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:30 Download gff for
BO16443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-PA | 1..627 | 18..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:31 Download gff for
BO16443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 189..819 | 19..649 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:32 Download gff for
BO16443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccm3-RA | 189..819 | 19..649 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:32 Download gff for
BO16443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15372395..15372572 | 399..576 | 100 | -> | Minus |
3R | 15372631..15372763 | 266..398 | 100 | -> | Minus |
3R | 15372849..15373013 | 101..265 | 100 | -> | Minus |
3R | 15373386..15373467 | 19..100 | 100 | | Minus |
3R | 15372145..15372217 | 577..649 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:31 Download gff for
BO16443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11197867..11197939 | 577..649 | 95 | -> | Minus |
arm_3R | 11198117..11198294 | 399..576 | 100 | -> | Minus |
arm_3R | 11198353..11198485 | 266..398 | 100 | -> | Minus |
arm_3R | 11198571..11198735 | 101..265 | 100 | -> | Minus |
arm_3R | 11199108..11199189 | 19..100 | 100 | | Minus |
BO16443.5prime Sequence
656 bp (602 high quality bases) assembled on 2006-10-13
> BO16443.5prime
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGGGCAGCTTTC
TAGACC
BO16443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5073-PA | 627 | CG5073-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 1589 | CG5073-RA | 196..819 | 17..640 | 3120 | 100 | Plus |
CG6136-RD | 2071 | CG6136-RD | 1..61 | 77..17 | 305 | 100 | Minus |
CG6136-RC | 2177 | CG6136-RC | 1..61 | 77..17 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15372392..15372572 | 80..260 | 905 | 100 | Plus |
3R | 32079331 | 3R | 15372849..15373013 | 394..558 | 825 | 100 | Plus |
3R | 32079331 | 3R | 15372631..15372764 | 261..394 | 670 | 100 | Plus |
3R | 32079331 | 3R | 15373386..15373467 | 559..640 | 410 | 100 | Plus |
3R | 32079331 | 3R | 15372152..15372217 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:27:05 has no hits.
BO16443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:31 Download gff for
BO16443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-PA | 1..627 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:36 Download gff for
BO16443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 189..822 | 10..645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:00 Download gff for
BO16443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccm3-RA | 189..822 | 10..645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:00 Download gff for
BO16443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15372145..15372217 | 10..82 | 95 | -> | Plus |
3R | 15372395..15372572 | 83..260 | 100 | -> | Plus |
3R | 15372631..15372763 | 261..393 | 100 | -> | Plus |
3R | 15372849..15373013 | 394..558 | 100 | -> | Plus |
3R | 15373386..15373470 | 559..645 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:36 Download gff for
BO16443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11199108..11199192 | 559..645 | 96 | | Plus |
arm_3R | 11197867..11197939 | 10..82 | 95 | -> | Plus |
arm_3R | 11198117..11198294 | 83..260 | 100 | -> | Plus |
arm_3R | 11198353..11198485 | 261..393 | 100 | -> | Plus |
arm_3R | 11198571..11198735 | 394..558 | 100 | -> | Plus |
BO16443.complete Sequence
658 bp assembled on 2006-10-11
GenBank Submission: FJ633834
> BO16443.complete
GAAGTTATCAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTC
TGCCCGTCATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTT
GGCGCTGCCCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAA
TCCGGGCTTCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATC
TGAATGTTAACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACG
GAAGCGGACCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCA
GGAGCTCAATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATAC
CCGATGAGATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATC
GCCAGCGCCATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTT
TATACCTGGCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGT
TCGTCAAATATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAA
GAAGGACAACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCA
AACGAATCAAATAATGCTGACAGTTAAGAGTAAATGCGAGGCAAGCTTTC
TAGACCAT
BO16443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 627 | CG5073-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-RA | 1589 | CG5073-RA | 196..819 | 17..640 | 3120 | 100 | Plus |
CG6136-RD | 2071 | CG6136-RD | 1..61 | 77..17 | 305 | 100 | Minus |
CG6136-RC | 2177 | CG6136-RC | 1..61 | 77..17 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15372392..15372572 | 80..260 | 905 | 100 | Plus |
3R | 32079331 | 3R | 15372849..15373013 | 394..558 | 825 | 100 | Plus |
3R | 32079331 | 3R | 15372631..15372764 | 261..394 | 670 | 100 | Plus |
3R | 32079331 | 3R | 15373386..15373467 | 559..640 | 410 | 100 | Plus |
3R | 32079331 | 3R | 15372152..15372217 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:05:54 has no hits.
BO16443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:28 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 1..627 | 17..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:05 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 187..817 | 10..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:29 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 196..819 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:29 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5073-RA | 187..817 | 10..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:53 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccm3-RA | 196..819 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:53 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15372152..15372217 | 17..82 | 100 | -> | Plus |
3R | 15372395..15372572 | 83..260 | 100 | -> | Plus |
3R | 15372631..15372763 | 261..393 | 100 | -> | Plus |
3R | 15372849..15373013 | 394..558 | 100 | -> | Plus |
3R | 15373386..15373467 | 559..642 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:29 Download gff for
BO16443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11197874..11197939 | 17..82 | 100 | -> | Plus |
arm_3R | 11198117..11198294 | 83..260 | 100 | -> | Plus |
arm_3R | 11198353..11198485 | 261..393 | 100 | -> | Plus |
arm_3R | 11198571..11198735 | 394..558 | 100 | -> | Plus |
arm_3R | 11199108..11199189 | 559..642 | 97 | | Plus |
BO16443.pep Sequence
Translation from 16 to 658
> BO16443.pep
MTMGEPTSSLVLPVILRPIFSQLERRDVGAAQSLRSAILKSEQNNPGFCY
DLVATIVRRADLNVNLNEAVLRLQGKITEADLNEYRLTRTEEPFQELNRK
SVALKVILSRIPDEINDRKTFLETIKEIASAIKKLLDVVNEIGSFIPGVT
GKQAVEQRKKEFVKYSKKFSTTLKEYFKEGQPNAVFISALFLIRQTNQIM
LTVKSKCEASFLDH
BO16443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccm3-PA | 208 | CG5073-PA | 1..208 | 1..208 | 1026 | 100 | Plus |