Clone Sequence Records
BO16444.3prime Sequence
565 bp (462 high quality bases) assembled on 2006-10-13
> BO16444.3prime
ATGGTCTAGAAAGCTTGCGAAAAAGTCCATGTCCCCGCAATTGACGTCCA
GAAAGTCGTGGTCGTAGCTGATTAAATCCTTCAGCGGCGCTCCCTGAGCC
GCCGCCGCTGCTTTGGATGTGGAGGGAAGTTCCGCATTGTCCACAAGATT
TATATTGATCTCGTGGGTCCTGTACTCAGGGCTGTCGTGCTCCTGCTCAG
CGCCAACAGGGGAGGGTGGCGGGTTGGACAAGCTGCCCGGTTGCTTATCT
TCACTTTGCTCGTCGCCCTGCATGTAGTACTCTTTGCGCTGATTTAACGT
CGGCAGTTCCGTAACCTGCTTGCTGAGGCACTTCTTCAACTCTTCCACCT
TACGGTCCCGCATCAACGTTTCGATCTGCTTTCGAGACTTGCTCAGACTC
TGGCGATCCTCACTAAAAATGCGCTTCTGCTGCTCCTGAGTGATGTTATC
GTGGTGCTTTATTANGAACAGGAATACCCCGCCTGGTGTACGTCTCCGTA
TGCCGTTTTTGATCATCATGCCGCCATCGGCTTCAATGCGCTGAGTTTTC
CTGTATAGCTCTAGG
BO16444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8069-PA | 1362 | Phax-RA | 813..1359 | 565..19 | 2666 | 99.4 | Minus |
CG8069-PB | 1074 | Phax-RB | 525..1071 | 565..19 | 2666 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 10:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1591 | CG8069-RB | 945..1491 | 565..19 | 2694 | 99.5 | Minus |
Phax-RA | 1533 | CG8069-RA | 887..1433 | 565..19 | 2694 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 10:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9115384..9115660 | 507..231 | 1374 | 99.6 | Minus |
2R | 25286936 | 2R | 9115719..9115930 | 230..19 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 9115273..9115330 | 565..508 | 260 | 96.6 | Minus |
Blast to na_te.dros performed on 2015-02-08 10:55:27 has no hits.
BO16444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:31 Download gff for
BO16444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PB | 525..1074 | 18..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:28:31 Download gff for
BO16444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 887..1438 | 13..565 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:34:54 Download gff for
BO16444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 887..1438 | 13..565 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:34:54 Download gff for
BO16444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9115273..9115330 | 508..565 | 96 | -> | Minus |
2R | 9115384..9115660 | 231..507 | 99 | -> | Minus |
2R | 9115719..9115935 | 13..230 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:28:31 Download gff for
BO16444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5003224..5003440 | 13..230 | 98 | | Minus |
arm_2R | 5002778..5002835 | 508..565 | 96 | -> | Minus |
arm_2R | 5002889..5003165 | 231..507 | 99 | -> | Minus |
BO16444.5prime Sequence
472 bp (471 high quality bases) assembled on 2006-10-13
> BO16444.5prime
GAAGTTATCAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGC
AACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCCCTG
CAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAG
CGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGC
TGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGAC
GGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCG
GCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTC
ACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGC
GAGCCCAGACACATTCTGGACTTAAACGAAGTGAGTGAGAGAGATCCTTC
GGATGTGGCTACCGAAATGGCC
BO16444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8069-PA | 1362 | Phax-RA | 289..744 | 17..472 | 2255 | 99.7 | Plus |
CG8069-PB | 1074 | Phax-RB | 1..456 | 17..472 | 2255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1591 | CG8069-RB | 421..876 | 17..472 | 2265 | 99.8 | Plus |
Phax-RA | 1533 | CG8069-RA | 363..818 | 17..472 | 2265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114694..9115149 | 17..472 | 2265 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 05:45:17 has no hits.
BO16444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:32 Download gff for
BO16444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PB | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:20:17 Download gff for
BO16444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 360..818 | 11..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:31:08 Download gff for
BO16444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 360..818 | 11..472 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:31:08 Download gff for
BO16444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114691..9115149 | 11..472 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:20:17 Download gff for
BO16444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5002196..5002654 | 11..472 | 99 | | Plus |
BO16444.complete Sequence
1105 bp assembled on 2007-03-23
GenBank Submission: FJ633835
> BO16444.complete
GAAGTTATCAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGC
AACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCCCTG
CAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAG
CGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGC
TGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGAC
GGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCG
GCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTC
ACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGC
GAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCCTTC
GGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACGAAT
TACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCTAGAGCTA
TACAAGGAAACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAAAAA
CGGCATACGGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAAAGC
ACCACGATAACATCACTCAGGAGCAGCAGAAGCGCATTTTTAGTGAGGAT
CGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGATGCGGGA
CCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGCAAGCAGGTTACGGAAC
TGCCGACGTTAAATCAGCGCAAAGAGTACTACATGCAGGGCGACGAGCAA
AGTGAAGATAAGCAACCGGGCAGCTTGTCCAACCCGCCACCCTCCCCTGT
TGGCGCTGAGCAGGAGCACGACAGCCCTGAGTACAGGACCCACGAGATCA
ATATAAATCTTGTGGACAATGCGGAACTTCCCTCCACATCCAAAGCAGCG
GCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAATCAGCTACGACCACGA
CTTTCTGGACGTCAATTGCGGGGACATGGACTTTTTCGCAAGCTTTCTAG
ACCAT
BO16444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1074 | CG8069-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Phax-RA | 1362 | CG8069-PA | 289..1359 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1591 | CG8069-RB | 421..1491 | 17..1087 | 5355 | 100 | Plus |
Phax-RA | 1533 | CG8069-RA | 363..1433 | 17..1087 | 5355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114694..9115183 | 17..506 | 2450 | 100 | Plus |
2R | 25286936 | 2R | 9115384..9115660 | 599..875 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 9115719..9115930 | 876..1087 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 506..598 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:32:13 has no hits.
BO16444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:07 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RB | 1..1074 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:08 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RB | 417..1495 | 11..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:49 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 363..1433 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:07 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RB | 417..1495 | 11..1093 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:28 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 363..1433 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:28 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114694..9115183 | 17..506 | 100 | -> | Plus |
2R | 9115239..9115330 | 507..598 | 100 | -> | Plus |
2R | 9115384..9115660 | 599..875 | 100 | -> | Plus |
2R | 9115719..9115930 | 876..1089 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:49 Download gff for
BO16444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5002889..5003165 | 599..875 | 100 | -> | Plus |
arm_2R | 5002199..5002688 | 17..506 | 100 | -> | Plus |
arm_2R | 5002744..5002835 | 507..598 | 100 | -> | Plus |
arm_2R | 5003224..5003435 | 876..1089 | 99 | | Plus |
BO16444.pep Sequence
Translation from 16 to 1105
> BO16444.pep
MRRVPPTDAEMQPNRARFKKYNVWASALQEDALSENMRGCDVTRSGRDRN
VENYDFSLRYRLNGENTLKRRLSNSSEDGGECSHPAHKRGRPSSRPITGN
QQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATE
MASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRR
TPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEE
LKKCLSKQVTELPTLNQRKEYYMQGDEQSEDKQPGSLSNPPPSPVGAEQE
HDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLKDLISYDHDFLDVN
CGDMDFFASFLDH
BO16444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-PB | 357 | CG8069-PB | 1..357 | 1..357 | 1862 | 100 | Plus |
Phax-PA | 453 | CG8069-PA | 97..453 | 1..357 | 1862 | 100 | Plus |