Clone BO16444 Report

Search the DGRC for BO16444

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptPhax-RB
Protein status:BO16444.pep: full length peptide match
Sequenced Size:1105

Clone Sequence Records

BO16444.3prime Sequence

565 bp (462 high quality bases) assembled on 2006-10-13

> BO16444.3prime
ATGGTCTAGAAAGCTTGCGAAAAAGTCCATGTCCCCGCAATTGACGTCCA
GAAAGTCGTGGTCGTAGCTGATTAAATCCTTCAGCGGCGCTCCCTGAGCC
GCCGCCGCTGCTTTGGATGTGGAGGGAAGTTCCGCATTGTCCACAAGATT
TATATTGATCTCGTGGGTCCTGTACTCAGGGCTGTCGTGCTCCTGCTCAG
CGCCAACAGGGGAGGGTGGCGGGTTGGACAAGCTGCCCGGTTGCTTATCT
TCACTTTGCTCGTCGCCCTGCATGTAGTACTCTTTGCGCTGATTTAACGT
CGGCAGTTCCGTAACCTGCTTGCTGAGGCACTTCTTCAACTCTTCCACCT
TACGGTCCCGCATCAACGTTTCGATCTGCTTTCGAGACTTGCTCAGACTC
TGGCGATCCTCACTAAAAATGCGCTTCTGCTGCTCCTGAGTGATGTTATC
GTGGTGCTTTATTANGAACAGGAATACCCCGCCTGGTGTACGTCTCCGTA
TGCCGTTTTTGATCATCATGCCGCCATCGGCTTCAATGCGCTGAGTTTTC
CTGTATAGCTCTAGG

BO16444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8069-PA 1362 Phax-RA 813..1359 565..19 2666 99.4 Minus
CG8069-PB 1074 Phax-RB 525..1071 565..19 2666 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 10:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1591 CG8069-RB 945..1491 565..19 2694 99.5 Minus
Phax-RA 1533 CG8069-RA 887..1433 565..19 2694 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 10:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9115384..9115660 507..231 1374 99.6 Minus
2R 25286936 2R 9115719..9115930 230..19 1060 100 Minus
2R 25286936 2R 9115273..9115330 565..508 260 96.6 Minus
Blast to na_te.dros performed on 2015-02-08 10:55:27 has no hits.

BO16444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:31 Download gff for BO16444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PB 525..1074 18..565 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:28:31 Download gff for BO16444.3prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 887..1438 13..565 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:34:54 Download gff for BO16444.3prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 887..1438 13..565 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:34:54 Download gff for BO16444.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9115273..9115330 508..565 96 -> Minus
2R 9115384..9115660 231..507 99 -> Minus
2R 9115719..9115935 13..230 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:28:31 Download gff for BO16444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5003224..5003440 13..230 98   Minus
arm_2R 5002778..5002835 508..565 96 -> Minus
arm_2R 5002889..5003165 231..507 99 -> Minus

BO16444.5prime Sequence

472 bp (471 high quality bases) assembled on 2006-10-13

> BO16444.5prime
GAAGTTATCAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGC
AACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCCCTG
CAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAG
CGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGC
TGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGAC
GGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCG
GCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTC
ACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGC
GAGCCCAGACACATTCTGGACTTAAACGAAGTGAGTGAGAGAGATCCTTC
GGATGTGGCTACCGAAATGGCC

BO16444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8069-PA 1362 Phax-RA 289..744 17..472 2255 99.7 Plus
CG8069-PB 1074 Phax-RB 1..456 17..472 2255 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1591 CG8069-RB 421..876 17..472 2265 99.8 Plus
Phax-RA 1533 CG8069-RA 363..818 17..472 2265 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114694..9115149 17..472 2265 99.8 Plus
Blast to na_te.dros performed on 2015-02-03 05:45:17 has no hits.

BO16444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:32 Download gff for BO16444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PB 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:20:17 Download gff for BO16444.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 360..818 11..472 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:31:08 Download gff for BO16444.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 360..818 11..472 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:31:08 Download gff for BO16444.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9114691..9115149 11..472 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:20:17 Download gff for BO16444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5002196..5002654 11..472 99   Plus

BO16444.complete Sequence

1105 bp assembled on 2007-03-23

GenBank Submission: FJ633835

> BO16444.complete
GAAGTTATCAGTCGACATGCGGCGCGTTCCGCCCACGGATGCTGAAATGC
AACCGAATCGAGCCCGTTTCAAGAAGTACAACGTGTGGGCTTCTGCCCTG
CAAGAGGATGCGCTCAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAG
CGGTCGGGATCGAAATGTTGAAAACTACGACTTCTCATTGCGATACCGGC
TGAACGGCGAGAACACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGAC
GGCGGCGAATGCTCCCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCG
GCCCATCACCGGGAATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTC
ACCGGTCACGTCGTGGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGC
GAGCCCAGACACATTCTGGACTTAAACGAAGTGGGTGAGAGAGATCCTTC
GGATGTGGCTACCGAAATGGCCAGCAAACTGTACGAGGAAAAGGACGAAT
TACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGATGTGTGCCTAGAGCTA
TACAAGGAAACTCAGCGCATTGAAGCCGATGGCGGCATGATGATCAAAAA
CGGCATACGGAGACGTACACCAGGCGGGGTATTCCTGTTCCTAATAAAGC
ACCACGATAACATCACTCAGGAGCAGCAGAAGCGCATTTTTAGTGAGGAT
CGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCGAAACGTTGATGCGGGA
CCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGCAAGCAGGTTACGGAAC
TGCCGACGTTAAATCAGCGCAAAGAGTACTACATGCAGGGCGACGAGCAA
AGTGAAGATAAGCAACCGGGCAGCTTGTCCAACCCGCCACCCTCCCCTGT
TGGCGCTGAGCAGGAGCACGACAGCCCTGAGTACAGGACCCACGAGATCA
ATATAAATCTTGTGGACAATGCGGAACTTCCCTCCACATCCAAAGCAGCG
GCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAATCAGCTACGACCACGA
CTTTCTGGACGTCAATTGCGGGGACATGGACTTTTTCGCAAGCTTTCTAG
ACCAT

BO16444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1074 CG8069-PB 1..1071 17..1087 5355 100 Plus
Phax-RA 1362 CG8069-PA 289..1359 17..1087 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1591 CG8069-RB 421..1491 17..1087 5355 100 Plus
Phax-RA 1533 CG8069-RA 363..1433 17..1087 5355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114694..9115183 17..506 2450 100 Plus
2R 25286936 2R 9115384..9115660 599..875 1385 100 Plus
2R 25286936 2R 9115719..9115930 876..1087 1060 100 Plus
2R 25286936 2R 9115238..9115330 506..598 465 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:32:13 has no hits.

BO16444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:07 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 1..1074 17..1088 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:08 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 417..1495 11..1093 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:49 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 363..1433 17..1089 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:07 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RB 417..1495 11..1093 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:28 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 363..1433 17..1089 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:28 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9114694..9115183 17..506 100 -> Plus
2R 9115239..9115330 507..598 100 -> Plus
2R 9115384..9115660 599..875 100 -> Plus
2R 9115719..9115930 876..1089 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:49 Download gff for BO16444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5002889..5003165 599..875 100 -> Plus
arm_2R 5002199..5002688 17..506 100 -> Plus
arm_2R 5002744..5002835 507..598 100 -> Plus
arm_2R 5003224..5003435 876..1089 99   Plus

BO16444.pep Sequence

Translation from 16 to 1105

> BO16444.pep
MRRVPPTDAEMQPNRARFKKYNVWASALQEDALSENMRGCDVTRSGRDRN
VENYDFSLRYRLNGENTLKRRLSNSSEDGGECSHPAHKRGRPSSRPITGN
QQRGLVKSRTGHRSRRGTSSASGSSDFCEPRHILDLNEVGERDPSDVATE
MASKLYEEKDELLVRVVEVLGIDVCLELYKETQRIEADGGMMIKNGIRRR
TPGGVFLFLIKHHDNITQEQQKRIFSEDRQSLSKSRKQIETLMRDRKVEE
LKKCLSKQVTELPTLNQRKEYYMQGDEQSEDKQPGSLSNPPPSPVGAEQE
HDSPEYRTHEININLVDNAELPSTSKAAAAAQGAPLKDLISYDHDFLDVN
CGDMDFFASFLDH

BO16444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PB 357 CG8069-PB 1..357 1..357 1862 100 Plus
Phax-PA 453 CG8069-PA 97..453 1..357 1862 100 Plus