Clone BO16446 Report

Search the DGRC for BO16446

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptAdgf-D-RA
Protein status:BO16446.pep: validated full length
Sequenced Size:1540

Clone Sequence Records

BO16446.3prime Sequence

816 bp (717 high quality bases) assembled on 2006-10-13

> BO16446.3prime
ATGGTCTAGAAAGCTTGCGAATTTTGGATTCAAGACATTCGCAATAAACT
CCTGCCACTTGCGCTGGAATACCCGATTGATTTTCCGCCTCTCGTCCGAG
GTGAGAACGGCGTACTTGATGGAGTTCAAGGCCAGCTGCTTGAGAAAGCG
CAGATCCGCATCCGCCGGAGCCAAGGCCATGAAGGCGTAGTAGAAATCGT
AGCTGAGACCCTTGGCTCCCCAAACACCCGGATCATCGGATGATATAACG
ATGGGAAAGTTCTCGGCTATCAGGAAGCTGGCCGGATGATTTCGCAGATC
CCAGACGAAGCCCAAGACCTGGTTGGAAATGGGATTCACCTCGATGGCGA
TGTTACGCTTCTTGATGGTGGACCACAATTGTGGATGCTTGGGCAGGGCG
AAGGCATGGCCAATCCGCTTCGTATTCAGCAGAATGGCGTCCATCATGTT
CCAGTCCGTTCGGCCATTCCAATTCGTCTCGCCGGCGTGGAAGAAGTAGT
TTGCCGTGCTAGGAAGATCGGACAGTTGGTTGATATACCTGTTCAGCGGT
TCTCCAGTGTCCTCCTGACCAATCAGATCGAAACCAATCACAAAGTTCGG
TTTGGCATGGTGCAGCTGCTTAAAAGTGGTGATTCGGCGCAACATCTCCT
CCTCGGATGCGCGATTCCGCTTGGCATATATCACCTTAACACCGATGAAG
TCATGGTGCTTGGCCTTGAAATCCTCCACAATCCGTTCCAGCTCGTTGGG
CACCCTCAAGGTGCTCAGAGTTCGATTGTTGTCGTCGTACAGCGGCGAGA
GGGAGGCTCGTATCTC

BO16446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9621-PA 1509 Adgf-D-RA 709..1506 816..19 3890 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1613 CG9621-RA 784..1581 816..19 3930 99.5 Minus
ninaB-RA 2164 CG9347-RA 2116..2164 19..67 245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13703116..13703570 19..473 2275 100 Plus
3R 32079331 3R 13703872..13704054 611..793 855 97.8 Plus
3R 32079331 3R 13703627..13703763 474..610 685 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:44:40 has no hits.

BO16446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:33 Download gff for BO16446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9621-PA 709..1509 15..816 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:16:17 Download gff for BO16446.3prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 784..1590 7..816 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:02 Download gff for BO16446.3prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 784..1590 7..816 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:02 Download gff for BO16446.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13703107..13703570 7..473 99 <- Plus
3R 13703627..13703763 474..610 100 <- Plus
3R 13703872..13704053 611..792 97 <- Plus
3R 13704110..13704133 793..816 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:16:17 Download gff for BO16446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9528829..9529292 7..473 99 <- Plus
arm_3R 9529349..9529485 474..610 100 <- Plus
arm_3R 9529594..9529775 611..792 97 <- Plus
arm_3R 9529832..9529855 793..816 100   Plus

BO16446.5prime Sequence

782 bp (752 high quality bases) assembled on 2006-10-13

> BO16446.5prime
GAAGTTATCAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCA
CCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAA
ACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGG
CAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGA
ACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTAC
GCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGA
GGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTC
ACAATACGGGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACC
ACCAATAATCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCAC
CTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGA
GGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCAC
ATCAATATGCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAA
GATTTGGGAGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATA
AATACCGACCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTT
TGCGAGGATAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCT
GTACGACGACNACAATCGAACTCTGAGCACCT

BO16446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9621-PA 1509 Adgf-D-RA 1..766 17..782 3811 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1613 CG9621-RA 76..841 17..782 3819 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13704333..13704818 578..93 2430 100 Minus
3R 32079331 3R 13704110..13704281 748..577 860 100 Minus
3R 32079331 3R 13705252..13705327 92..17 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:40:33 has no hits.

BO16446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:33 Download gff for BO16446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9621-PA 1..766 17..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:31:59 Download gff for BO16446.5prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..841 17..782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:49 Download gff for BO16446.5prime
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..841 17..782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:49 Download gff for BO16446.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13705252..13705327 17..92 100   Minus
3R 13704020..13704053 749..782 97 <- Minus
3R 13704110..13704279 579..748 100 <- Minus
3R 13704333..13704818 93..578 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:31:59 Download gff for BO16446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9529742..9529775 749..782 97 <- Minus
arm_3R 9529832..9530001 579..748 100 <- Minus
arm_3R 9530055..9530540 93..578 100 <- Minus
arm_3R 9530974..9531049 17..92 100   Minus

BO16446.complete Sequence

1540 bp assembled on 2007-03-23

GenBank Submission: FJ633836

> BO16446.complete
GAAGTTATCAGTCGACATGGCGATGTGGTTTCTAGGTGCTTTGGTGGCCA
CCGTTGTGCTCCTAACGGGCAGCGTGCAAGCCACAGATCTACCCTATGAA
ACACTGAGGGAGCAAATCATGGAAGCGGAGCGCGTGGCCTCGCTGGGTGG
CAACATCTGGCTGTCGTCCGACGAGGAGAAGGCCAACAGCATCCTGATGA
ACGCCAAGCGGGCAGAGATCGCCGAAGGACTCAAGACGCCGGAGAAGTAC
GCGCCCGCGATGCACTTCTTCCAGGGCAGGCAGTACGTCCGGCAGAGCGA
GGTATTCCGCATGATCCAGAAGATTCCGAAGGGTGCCTTTCTGCACGGTC
ACAATACGGGTATGGTGACTTCACGCTGGATCATACAGAATCTGACCACC
ACCAATAATCTGTACACCTGTCGCAATGTGGATGGACTGCTAGTGTTCAC
CTACGATCAGTCCGGATGCCATAGCGAAGTGCAGAATGTGTGCACTGAGA
GGATAAATGCCGAGGATCGGGGAAAGTACGAGCGCCAGCTGGAGAAGCAC
ATCAATATGCACGGACCAAGGCCGGAAGCTCTATTGCCAAATCGTAAGAA
GATTTGGGAGCGCTTTGAGAACATATTTACCACCGTGGATCGGCTGTATA
AATACCGACCCACCTATTGTGCCTATCACAAGCGAATGTTGGAGGAACTT
TGCGAGGATAACATTATCTATGCCGAGATACGAGCCTCCCTCTCGCCGCT
GTACGACGACAACAATCGAACTCTGAGCACCTTGGAGGTGGCCAACGAGC
TGGAACGGATTGTGGAGGAATTCAAGGCCAAGCACCATGACTTCATCGGT
GTTAAGGTGATATATGCCAAGCGGAATCGCGCATCCGAGGAGGAGATGTT
GCGCCGAATCACCACTTTTAAGCAGCTGCACCATGCCAAACCGAACTTTG
TGATTGGTTTCGATCTGATTGGTCAGGAGGACACTGGAGAACCGCTGAAC
AGGTATATCAACCAACTGTCCGATCTTCCTAGCACGGCAAACTACTTCTT
CCACGCCGGCGAGACGAATTGGAATGGCCGAACGGACTGGAACATGATGG
ACGCCATTCTGCTGAATACGAAGCGGATTGGCCATGCCTTCGCCCTGCCC
AAGCATCCACAATTGTGGTCCACCATCAAGAAGCGTAACATCGCCATCGA
GGTGAATCCCATTTCCAACCAGGTCTTGGGCTTCGTCTGGGATCTGCGAA
ATCATCCGGCCAGCTTCCTGATAGCCGAGAACTTTCCCATCGTTATATCA
TCCGATGATCCGGGTGTTTGGGGAGCCAAGGGTCTCAGCTACGATTTCTA
CTACGCCTTCATGGCCTTGGCTCCGGCGGATGCGGATCTGCGCTTTCTCA
AGCAGCTGGCCTTGAACTCCATCAAGTACGCCGTTCTCACCTCGGACGAG
AGGCGGAAAATCAATCGGGTATTCCAGCGCAAGTGGCAGGAGTTTATTGC
GAATGTCTTGAATCCAAAATTCGCAAGCTTTCTAGACCAT

BO16446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1509 CG9621-PA 1..1506 17..1522 7530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-RA 1613 CG9621-RA 76..1581 17..1522 7530 100 Plus
ninaB-RA 2164 CG9347-RA 2116..2164 1522..1474 245 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13704333..13704818 578..93 2430 100 Minus
3R 32079331 3R 13703116..13703570 1522..1068 2275 100 Minus
3R 32079331 3R 13703872..13704054 930..748 915 100 Minus
3R 32079331 3R 13704110..13704281 748..577 860 100 Minus
3R 32079331 3R 13703627..13703763 1067..931 685 100 Minus
3R 32079331 3R 13705252..13705327 92..17 380 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:51:22 has no hits.

BO16446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:56 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 1..1509 17..1526 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:51 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 132..1646 17..1534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:44 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..1581 17..1524 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:57 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 132..1646 17..1534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:25 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
Adgf-D-RA 76..1581 17..1524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:25 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13703114..13703570 1068..1524 99 <- Minus
3R 13703627..13703763 931..1067 100 <- Minus
3R 13703872..13704053 749..930 100 <- Minus
3R 13704110..13704279 579..748 100 <- Minus
3R 13704333..13704818 93..578 100 <- Minus
3R 13705252..13705327 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:44 Download gff for BO16446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9530974..9531049 17..92 100   Minus
arm_3R 9528836..9529292 1068..1524 99 <- Minus
arm_3R 9529349..9529485 931..1067 100 <- Minus
arm_3R 9529594..9529775 749..930 100 <- Minus
arm_3R 9529832..9530001 579..748 100 <- Minus
arm_3R 9530055..9530540 93..578 100 <- Minus

BO16446.pep Sequence

Translation from 16 to 1540

> BO16446.pep
MAMWFLGALVATVVLLTGSVQATDLPYETLREQIMEAERVASLGGNIWLS
SDEEKANSILMNAKRAEIAEGLKTPEKYAPAMHFFQGRQYVRQSEVFRMI
QKIPKGAFLHGHNTGMVTSRWIIQNLTTTNNLYTCRNVDGLLVFTYDQSG
CHSEVQNVCTERINAEDRGKYERQLEKHINMHGPRPEALLPNRKKIWERF
ENIFTTVDRLYKYRPTYCAYHKRMLEELCEDNIIYAEIRASLSPLYDDNN
RTLSTLEVANELERIVEEFKAKHHDFIGVKVIYAKRNRASEEEMLRRITT
FKQLHHAKPNFVIGFDLIGQEDTGEPLNRYINQLSDLPSTANYFFHAGET
NWNGRTDWNMMDAILLNTKRIGHAFALPKHPQLWSTIKKRNIAIEVNPIS
NQVLGFVWDLRNHPASFLIAENFPIVISSDDPGVWGAKGLSYDFYYAFMA
LAPADADLRFLKQLALNSIKYAVLTSDERRKINRVFQRKWQEFIANVLNP
KFASFLDH

BO16446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Adgf-D-PA 502 CG9621-PA 1..502 1..502 2649 100 Plus
Adgf-C-PA 506 CG9345-PA 4..501 9..498 1107 43.8 Plus
Adgf-A-PB 553 CG5992-PB 52..538 13..497 928 40.1 Plus
Adgf-A-PA 553 CG5992-PA 52..538 13..497 928 40.1 Plus
Adgf-B-PA 520 CG5998-PA 40..519 27..502 866 38.8 Plus