Clone BO16453 Report

Search the DGRC for BO16453

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptSpt-I-RA
Protein status:BO16453.pep: validated full length
Sequenced Size:1438

Clone Sequence Records

BO16453.3prime Sequence

894 bp (764 high quality bases) assembled on 2006-10-13

> BO16453.3prime
ATGGTCTAGAAAGCTTGCTAGGACGGAGCTGGAAACACTCTCGATGACCT
CAAACGCATTGTCTATTTCCGAACTCTCCAGCAAACGGTTGACAGCAATG
CGAATGCTGGGACGGACTGGTTGGCGTTCCCTGTTCTGCAGGTAGGCAGC
CTGTACCACAGCCACTCCACGAGCAATGCACTTATCAGCCAGCTCTGTTA
GAAGTTTCAGTTCCTTGTCAAAGTTCTCGGCGGGCTGGGCAAGATACAAG
TGCTTCACTGGTGACACCTCATCGCCGCGCAGGGTTAGCTTGCTGAATCG
CAAAAACTTCTGGTGCAACGTCTTAGACTTTGCCTGCAGCTGCTCGAAGA
TTTGTGGTTCTCGTTCGAAACGATCCAACGCTGAAATAGCCGCCTGGGTG
AGCATGGGCGGCAGCGAGGCCGAGAAGATGTAGCCCAAGCCAGAGAGGCG
CTGGTGCTCGGCTATGAAGTGCGAGCCAACACAGAAGCCACCGACTGTTG
CCATCGAACCCTCCATGCCGGCCGATATCAGATCGACTTCATCACGATCG
ACATTAAAGTGCTCCGTAACTCCGTGACCACCCTGGCCCAATGTGCCAAA
GGAGATGCTTTCGTCGATGAACAAACGCAGCTTGTACTTCTGACGCAAGG
CCACCAGGTCGGGAAGTGGGCAAATCTCGCCCGTATTCATATAGATACCC
TCGGCGACGAGGAAGCGACGTGTCTTAGCCGCCTTTTTCGGATTTTTCTG
GTCTCGTTTTTCTTGCTNCATCAGCAGACGTTCTAGATCCTCAACGTCAT
TGTGCTTAAAGAAAACGATTGTGCTTCGTGAAGCATCCAGACCCTTCTGA
ATGGCAAAGTTGACAGCCTCATCCACAAAGATAAGGTCGCCACG

BO16453.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG4016-PB 1407 Spt-I-RB 529..1404 894..19 4336 99.7 Minus
CG4016-PA 1407 Spt-I-RA 529..1404 894..19 4336 99.7 Minus
CG4016-PC 1407 Spt-I-RC 529..1404 894..19 4336 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1769 CG4016-RC 628..1503 894..19 4354 99.8 Minus
Spt-I-RA 1727 CG4016-RA 586..1461 894..19 4354 99.8 Minus
Spt-I-RB 1799 CG4016-RB 658..1533 894..19 4354 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13169890..13170255 546..181 1830 100 Minus
2R 25286936 2R 13169507..13169834 874..547 1614 99.4 Minus
2R 25286936 2R 13170315..13170478 182..19 820 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:03:29 has no hits.

BO16453.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:38 Download gff for BO16453.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4016-PC 529..1407 15..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:07 Download gff for BO16453.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 658..1541 10..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:52 Download gff for BO16453.3prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 658..1541 10..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:52 Download gff for BO16453.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13169431..13169450 875..894 100 -> Minus
2R 13169507..13169834 547..874 99 -> Minus
2R 13169890..13170255 181..546 100 -> Minus
2R 13170317..13170486 10..180 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:07 Download gff for BO16453.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9056936..9056955 875..894 100 -> Minus
arm_2R 9057012..9057339 547..874 99 -> Minus
arm_2R 9057395..9057760 181..546 100 -> Minus
arm_2R 9057822..9057991 10..180 98   Minus

BO16453.5prime Sequence

850 bp (773 high quality bases) assembled on 2006-10-13

> BO16453.5prime
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGNTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTT

BO16453.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG4016-PB 1407 Spt-I-RB 1..833 17..849 4146 99.8 Plus
CG4016-PA 1407 Spt-I-RA 1..833 17..849 4146 99.8 Plus
CG4016-PC 1407 Spt-I-RC 1..833 17..849 4146 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1769 CG4016-RC 100..932 17..849 4154 99.9 Plus
Spt-I-RA 1727 CG4016-RA 58..890 17..849 4154 99.9 Plus
Spt-I-RB 1799 CG4016-RB 130..962 17..849 4154 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13168951..13169451 65..565 2505 100 Plus
2R 25286936 2R 13169507..13169791 565..849 1414 99.6 Plus
2R 25286936 2R 13168841..13168888 17..64 240 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:30:47 has no hits.

BO16453.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:39 Download gff for BO16453.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4016-PC 1..833 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:19 Download gff for BO16453.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 124..962 11..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:04 Download gff for BO16453.5prime
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 124..962 11..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:04 Download gff for BO16453.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13168835..13168888 11..64 96 -> Plus
2R 13168951..13169450 65..564 100 -> Plus
2R 13169507..13169791 565..850 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:19 Download gff for BO16453.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9056340..9056393 11..64 96 -> Plus
arm_2R 9056456..9056955 65..564 100 -> Plus
arm_2R 9057012..9057296 565..850 99   Plus

BO16453.complete Sequence

1438 bp assembled on 2006-10-11

GenBank Submission: FJ633837

> BO16453.complete
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGGTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTG
GGCCAGGGTGGTCACGGAGTTACGGAGCACTTTAATGTCGATCGTGATGA
AGTCGATCTGATATCGGCCGGCATGGAGGGTTCGATGGCAACAGTCGGTG
GCTTCTGTGTTGGCTCGCACTTCATAGCCGAGCACCAGCGCCTCTCTGGC
TTGGGCTACATCTTCTCGGCCTCGCTGCCGCCCATGCTCACCCAGGCGGC
TATTTCAGCGTTGGATCGTTTCGAACGAGAACCACAAATCTTCGAGCAGC
TGCAGGCAAAGTCTAAGACGTTGCACCAGAAGTTTTTGCGATTCAGCAAG
CTAACCCTGCGCGGCGATGAGGTGTCACCAGTGAAGCACTTGTATCTTGC
CCAGCCCGCCGAGAACTTTGACAAGGAACTGAAACTTCTAACAGAGCTGG
CTGATAAGTGCATTGCTCGTGGAGTGGCTGTGGTACAGGCTGCCTACCTG
CAGAACAGGGAACGCCAACCAGTCCGTCCCAGCATTCGCATTGCTGTCAA
CCGTTTGCTGGAGAGTTCGGAAATAGACAATGCGTTTGAGGTCATCGAGA
GTGTTTCCAGCTCCGTCCTAGCAAGCTTTCTAGACCAT

BO16453.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1407 CG4016-PC 1..1404 17..1420 7020 100 Plus
Spt-I-RA 1407 CG4016-PA 1..1404 17..1420 7020 100 Plus
Spt-I-RB 1407 CG4016-PB 1..1404 17..1420 7020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-RC 1769 CG4016-RC 100..1503 17..1420 7020 100 Plus
Spt-I-RA 1727 CG4016-RA 58..1461 17..1420 7020 100 Plus
Spt-I-RB 1799 CG4016-RB 130..1533 17..1420 7020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13168951..13169451 65..565 2505 100 Plus
2R 25286936 2R 13169890..13170255 893..1258 1830 100 Plus
2R 25286936 2R 13169507..13169834 565..892 1640 100 Plus
2R 25286936 2R 13170315..13170478 1257..1420 820 100 Plus
2R 25286936 2R 13168841..13168888 17..64 240 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:07:14 has no hits.

BO16453.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:32 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 1..1407 17..1424 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:09 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 92..1509 11..1429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:30 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 130..1533 17..1422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:32 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RC 92..1509 11..1429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:57 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
Spt-I-RB 130..1533 17..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:57 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13168841..13168888 17..64 100 -> Plus
2R 13168951..13169450 65..564 100 -> Plus
2R 13169507..13169834 565..892 100 -> Plus
2R 13169890..13170255 893..1258 100 -> Plus
2R 13170317..13170478 1259..1422 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:30 Download gff for BO16453.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9056346..9056393 17..64 100 -> Plus
arm_2R 9056456..9056955 65..564 100 -> Plus
arm_2R 9057012..9057339 565..892 100 -> Plus
arm_2R 9057395..9057760 893..1258 100 -> Plus
arm_2R 9057822..9057983 1259..1422 98   Plus

BO16453.pep Sequence

Translation from 16 to 1438

> BO16453.pep
MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK
EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG
SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK
FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS
TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI
CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS
AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD
RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN
FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES
SEIDNAFEVIESVSSSVLASFLDH

BO16453.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Spt-I-PC 468 CG4016-PC 1..468 1..468 2382 100 Plus
Spt-I-PA 468 CG4016-PA 1..468 1..468 2382 100 Plus
Spt-I-PB 468 CG4016-PB 1..468 1..468 2382 100 Plus
lace-PB 597 CG4162-PB 215..581 96..467 408 29.6 Plus
lace-PA 597 CG4162-PA 215..581 96..467 408 29.6 Plus