Clone Sequence Records
BO16453.3prime Sequence
894 bp (764 high quality bases) assembled on 2006-10-13
> BO16453.3prime
ATGGTCTAGAAAGCTTGCTAGGACGGAGCTGGAAACACTCTCGATGACCT
CAAACGCATTGTCTATTTCCGAACTCTCCAGCAAACGGTTGACAGCAATG
CGAATGCTGGGACGGACTGGTTGGCGTTCCCTGTTCTGCAGGTAGGCAGC
CTGTACCACAGCCACTCCACGAGCAATGCACTTATCAGCCAGCTCTGTTA
GAAGTTTCAGTTCCTTGTCAAAGTTCTCGGCGGGCTGGGCAAGATACAAG
TGCTTCACTGGTGACACCTCATCGCCGCGCAGGGTTAGCTTGCTGAATCG
CAAAAACTTCTGGTGCAACGTCTTAGACTTTGCCTGCAGCTGCTCGAAGA
TTTGTGGTTCTCGTTCGAAACGATCCAACGCTGAAATAGCCGCCTGGGTG
AGCATGGGCGGCAGCGAGGCCGAGAAGATGTAGCCCAAGCCAGAGAGGCG
CTGGTGCTCGGCTATGAAGTGCGAGCCAACACAGAAGCCACCGACTGTTG
CCATCGAACCCTCCATGCCGGCCGATATCAGATCGACTTCATCACGATCG
ACATTAAAGTGCTCCGTAACTCCGTGACCACCCTGGCCCAATGTGCCAAA
GGAGATGCTTTCGTCGATGAACAAACGCAGCTTGTACTTCTGACGCAAGG
CCACCAGGTCGGGAAGTGGGCAAATCTCGCCCGTATTCATATAGATACCC
TCGGCGACGAGGAAGCGACGTGTCTTAGCCGCCTTTTTCGGATTTTTCTG
GTCTCGTTTTTCTTGCTNCATCAGCAGACGTTCTAGATCCTCAACGTCAT
TGTGCTTAAAGAAAACGATTGTGCTTCGTGAAGCATCCAGACCCTTCTGA
ATGGCAAAGTTGACAGCCTCATCCACAAAGATAAGGTCGCCACG
BO16453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4016-PB | 1407 | Spt-I-RB | 529..1404 | 894..19 | 4336 | 99.7 | Minus |
CG4016-PA | 1407 | Spt-I-RA | 529..1404 | 894..19 | 4336 | 99.7 | Minus |
CG4016-PC | 1407 | Spt-I-RC | 529..1404 | 894..19 | 4336 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1769 | CG4016-RC | 628..1503 | 894..19 | 4354 | 99.8 | Minus |
Spt-I-RA | 1727 | CG4016-RA | 586..1461 | 894..19 | 4354 | 99.8 | Minus |
Spt-I-RB | 1799 | CG4016-RB | 658..1533 | 894..19 | 4354 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13169890..13170255 | 546..181 | 1830 | 100 | Minus |
2R | 25286936 | 2R | 13169507..13169834 | 874..547 | 1614 | 99.4 | Minus |
2R | 25286936 | 2R | 13170315..13170478 | 182..19 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:03:29 has no hits.
BO16453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:38 Download gff for
BO16453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4016-PC | 529..1407 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:07 Download gff for
BO16453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 658..1541 | 10..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:52 Download gff for
BO16453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 658..1541 | 10..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:52 Download gff for
BO16453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13169431..13169450 | 875..894 | 100 | -> | Minus |
2R | 13169507..13169834 | 547..874 | 99 | -> | Minus |
2R | 13169890..13170255 | 181..546 | 100 | -> | Minus |
2R | 13170317..13170486 | 10..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:07 Download gff for
BO16453.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9056936..9056955 | 875..894 | 100 | -> | Minus |
arm_2R | 9057012..9057339 | 547..874 | 99 | -> | Minus |
arm_2R | 9057395..9057760 | 181..546 | 100 | -> | Minus |
arm_2R | 9057822..9057991 | 10..180 | 98 | | Minus |
BO16453.5prime Sequence
850 bp (773 high quality bases) assembled on 2006-10-13
> BO16453.5prime
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGNTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTT
BO16453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4016-PB | 1407 | Spt-I-RB | 1..833 | 17..849 | 4146 | 99.8 | Plus |
CG4016-PA | 1407 | Spt-I-RA | 1..833 | 17..849 | 4146 | 99.8 | Plus |
CG4016-PC | 1407 | Spt-I-RC | 1..833 | 17..849 | 4146 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1769 | CG4016-RC | 100..932 | 17..849 | 4154 | 99.9 | Plus |
Spt-I-RA | 1727 | CG4016-RA | 58..890 | 17..849 | 4154 | 99.9 | Plus |
Spt-I-RB | 1799 | CG4016-RB | 130..962 | 17..849 | 4154 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13168951..13169451 | 65..565 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 13169507..13169791 | 565..849 | 1414 | 99.6 | Plus |
2R | 25286936 | 2R | 13168841..13168888 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:30:47 has no hits.
BO16453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:39 Download gff for
BO16453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4016-PC | 1..833 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:19 Download gff for
BO16453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 124..962 | 11..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:04 Download gff for
BO16453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 124..962 | 11..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:04 Download gff for
BO16453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13168835..13168888 | 11..64 | 96 | -> | Plus |
2R | 13168951..13169450 | 65..564 | 100 | -> | Plus |
2R | 13169507..13169791 | 565..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:19 Download gff for
BO16453.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9056340..9056393 | 11..64 | 96 | -> | Plus |
arm_2R | 9056456..9056955 | 65..564 | 100 | -> | Plus |
arm_2R | 9057012..9057296 | 565..850 | 99 | | Plus |
BO16453.complete Sequence
1438 bp assembled on 2006-10-11
GenBank Submission: FJ633837
> BO16453.complete
GAAGTTATCAGTCGACATGGTGGCCATCCAATTGTTCAACGAAATCGGCA
GTATTTTCCGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTG
CTCATAACCGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCG
CCGACAGCTGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAAC
CAGAGCCCTTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACC
CGCGTTGTGCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGA
CTGCCTAAATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGG
AGATACTGGAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCT
TGCGGACCTCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGA
GGATCGTATTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCT
ACGGCTTCTCGACCGTGGCCAGTGCCATTCCGGCGTATGCCAAACGTGGC
GACCTTATCTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCT
GGATGCTTCACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGG
ATCTAGAACGTCTGCTGATTGAGCAAGAAAAACGAGACCAGAAAAATCCG
AAAAAGGCGGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATAT
GAATACGGGCGAGATTTGCCCACTTCCCGACCTGGTGGCCTTGCGTCAGA
AGTACAAGCTGCGTTTGTTCATCGACGAAAGCATCTCCTTTGGCACATTG
GGCCAGGGTGGTCACGGAGTTACGGAGCACTTTAATGTCGATCGTGATGA
AGTCGATCTGATATCGGCCGGCATGGAGGGTTCGATGGCAACAGTCGGTG
GCTTCTGTGTTGGCTCGCACTTCATAGCCGAGCACCAGCGCCTCTCTGGC
TTGGGCTACATCTTCTCGGCCTCGCTGCCGCCCATGCTCACCCAGGCGGC
TATTTCAGCGTTGGATCGTTTCGAACGAGAACCACAAATCTTCGAGCAGC
TGCAGGCAAAGTCTAAGACGTTGCACCAGAAGTTTTTGCGATTCAGCAAG
CTAACCCTGCGCGGCGATGAGGTGTCACCAGTGAAGCACTTGTATCTTGC
CCAGCCCGCCGAGAACTTTGACAAGGAACTGAAACTTCTAACAGAGCTGG
CTGATAAGTGCATTGCTCGTGGAGTGGCTGTGGTACAGGCTGCCTACCTG
CAGAACAGGGAACGCCAACCAGTCCGTCCCAGCATTCGCATTGCTGTCAA
CCGTTTGCTGGAGAGTTCGGAAATAGACAATGCGTTTGAGGTCATCGAGA
GTGTTTCCAGCTCCGTCCTAGCAAGCTTTCTAGACCAT
BO16453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1407 | CG4016-PC | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Spt-I-RA | 1407 | CG4016-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Spt-I-RB | 1407 | CG4016-PB | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-RC | 1769 | CG4016-RC | 100..1503 | 17..1420 | 7020 | 100 | Plus |
Spt-I-RA | 1727 | CG4016-RA | 58..1461 | 17..1420 | 7020 | 100 | Plus |
Spt-I-RB | 1799 | CG4016-RB | 130..1533 | 17..1420 | 7020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13168951..13169451 | 65..565 | 2505 | 100 | Plus |
2R | 25286936 | 2R | 13169890..13170255 | 893..1258 | 1830 | 100 | Plus |
2R | 25286936 | 2R | 13169507..13169834 | 565..892 | 1640 | 100 | Plus |
2R | 25286936 | 2R | 13170315..13170478 | 1257..1420 | 820 | 100 | Plus |
2R | 25286936 | 2R | 13168841..13168888 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:07:14 has no hits.
BO16453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:32 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RC | 1..1407 | 17..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:09 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RC | 92..1509 | 11..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:30 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 130..1533 | 17..1422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:32 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RC | 92..1509 | 11..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:57 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spt-I-RB | 130..1533 | 17..1422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:57 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13168841..13168888 | 17..64 | 100 | -> | Plus |
2R | 13168951..13169450 | 65..564 | 100 | -> | Plus |
2R | 13169507..13169834 | 565..892 | 100 | -> | Plus |
2R | 13169890..13170255 | 893..1258 | 100 | -> | Plus |
2R | 13170317..13170478 | 1259..1422 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:30 Download gff for
BO16453.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9056346..9056393 | 17..64 | 100 | -> | Plus |
arm_2R | 9056456..9056955 | 65..564 | 100 | -> | Plus |
arm_2R | 9057012..9057339 | 565..892 | 100 | -> | Plus |
arm_2R | 9057395..9057760 | 893..1258 | 100 | -> | Plus |
arm_2R | 9057822..9057983 | 1259..1422 | 98 | | Plus |
BO16453.pep Sequence
Translation from 16 to 1438
> BO16453.pep
MVAIQLFNEIGSIFRNTPTFALVLETLLLITVIWLLLHRRGGGRRRQLTK
EEEDRIIADYEPEPLVADTDPNHPLLHTRVVQSRVGKRIQVDGHDCLNLG
SHNYLGFLEDQEILEEACKSLRKYGVGSCGPRGFYGTMDVHLDLEDRIAK
FMGLEEAIVYSYGFSTVASAIPAYAKRGDLIFVDEAVNFAIQKGLDASRS
TIVFFKHNDVEDLERLLIEQEKRDQKNPKKAAKTRRFLVAEGIYMNTGEI
CPLPDLVALRQKYKLRLFIDESISFGTLGQGGHGVTEHFNVDRDEVDLIS
AGMEGSMATVGGFCVGSHFIAEHQRLSGLGYIFSASLPPMLTQAAISALD
RFEREPQIFEQLQAKSKTLHQKFLRFSKLTLRGDEVSPVKHLYLAQPAEN
FDKELKLLTELADKCIARGVAVVQAAYLQNRERQPVRPSIRIAVNRLLES
SEIDNAFEVIESVSSSVLASFLDH
BO16453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spt-I-PC | 468 | CG4016-PC | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PA | 468 | CG4016-PA | 1..468 | 1..468 | 2382 | 100 | Plus |
Spt-I-PB | 468 | CG4016-PB | 1..468 | 1..468 | 2382 | 100 | Plus |
lace-PB | 597 | CG4162-PB | 215..581 | 96..467 | 408 | 29.6 | Plus |
lace-PA | 597 | CG4162-PA | 215..581 | 96..467 | 408 | 29.6 | Plus |