Clone Sequence Records
BO16458.3prime Sequence
944 bp (778 high quality bases) assembled on 2006-10-13
> BO16458.3prime
ATGGTCTAGAAAGCTTGCGTTGCCAGCAACGTTTTGGACTTCACTTGAAC
TGATTATCTCGTAATCTTTACTCGAGCTCTCCGAATCCGATCCCGAGTTG
CGTGGCGTTCCAGCTTTGGAATCCTTGGGCTGCGCCTTCGTTTCTTCTTC
ATCCACATCGTCTTCCTCGTAGTCATCGGCACCCACTTTGCGACGTTTGC
GGATCTCCATGTCGGTGTCATGTTCTTTGATGAGCTCGATTTTCTCTGGT
TCAAGCGTGGAAACCTCAGCATCCACATCACCGTCAGCGTCTCCATCCGC
ATCCACGGCTGTGTCCTCGGCATCGCTTTCTTTTTCCTTCTTCTTGTCCT
TCGATTTCGATTTCTTGTCGGTCTTGGCGGACGAATTATTTGGGTCACTG
TTATAGTTGCTCTCATATAGTGGCCAGAAGGAGGCGAAGAAGCTCACATC
CTCAGTCAGGTTGGGGAAGATCCAGAAGTGCAACTTGCCGCCGGTTAATG
CCCACACGATGATGAACACAATTAGACGTACAATTGTCAGAGCCAGGATG
AAAACAAGGAAGCCGGCAGCCGCAATGGACAAGTAGTAGACACCCTTGCG
TAGCAGTGGAGGCCACAGAGGGAATAGGCAAATGCCAACGGCGCCAAGTA
GCAGGATGAAGCCGAATATCCAGTAGTGGAGCGGTATGGGATCGTAGATC
CAGACGTATGCCTCGGAGCCGTCCACGAAGATCTGCTCAGGATGCATGTC
CAGGCGGATCTTGCGCTTTTTCTTCTCCTTTTTCTCCTTCTCTTTTTCGT
TGCCAGACGCACCTCCGTCTCCTTGGCCATTATCGCCTTCCGGATCGGTA
TCCTTCTTCTCATCCTTTGCTTTGTCCTTTTCCTTTATCTGGGTCTTCTC
CTTTGTCCGCTTCTTGTCGCTTCCAGACTTTCCTCTGATCTCCT
BO16458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4758-PA | 1248 | Trp1-RA | 379..1245 | 885..19 | 4310 | 99.8 | Minus |
CG4758-PB | 1287 | Trp1-RB | 418..1284 | 885..19 | 4310 | 99.8 | Minus |
CG4758-PA | 1248 | Trp1-RA | 320..354 | 944..910 | 150 | 97.1 | Minus |
CG4758-PB | 1287 | Trp1-RB | 359..393 | 944..910 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RB | 2093 | CG4758-RB | 488..1413 | 944..19 | 4510 | 99.4 | Minus |
Trp1-RA | 2045 | CG4758-RA | 440..1365 | 944..19 | 4510 | 99.4 | Minus |
Trp1-RC | 1532 | CG4758-RC | 488..1322 | 944..110 | 4055 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10011020..10011552 | 944..412 | 2500 | 97.9 | Minus |
2L | 23513712 | 2L | 10011605..10011908 | 413..110 | 1520 | 100 | Minus |
2L | 23513712 | 2L | 10012399..10012490 | 110..19 | 460 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 21:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 284..331 | 904..857 | 123 | 72.9 | Minus |
TAHRE | 10463 | TAHRE OSV 10463bp | 6452..6494 | 368..327 | 113 | 76.7 | Minus |
BO16458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:44 Download gff for
BO16458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4758-PB | 359..1287 | 15..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:36 Download gff for
BO16458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 440..1368 | 15..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:22 Download gff for
BO16458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 440..1368 | 15..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:22 Download gff for
BO16458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10011020..10011552 | 412..944 | 98 | -> | Minus |
2L | 10011607..10011908 | 110..411 | 100 | -> | Minus |
2L | 10012400..10012493 | 15..109 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:36 Download gff for
BO16458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10011020..10011552 | 412..944 | 98 | -> | Minus |
arm_2L | 10011607..10011908 | 110..411 | 100 | -> | Minus |
arm_2L | 10012400..10012493 | 15..109 | 97 | | Minus |
BO16458.5prime Sequence
790 bp (773 high quality bases) assembled on 2006-10-13
> BO16458.5prime
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGC
BO16458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4758-PA | 1248 | Trp1-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG4758-PB | 1287 | Trp1-RB | 76..813 | 53..790 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RD | 1484 | CG4758-RD | 121..894 | 17..790 | 3870 | 100 | Plus |
Trp1-RA | 2045 | CG4758-RA | 121..894 | 17..790 | 3870 | 100 | Plus |
Trp1-RC | 1532 | CG4758-RC | 205..942 | 53..790 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10010737..10011474 | 53..790 | 3690 | 100 | Plus |
2L | 23513712 | 2L | 10009501..10009537 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:22:58 has no hits.
BO16458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:46 Download gff for
BO16458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4758-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:01 Download gff for
BO16458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..894 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:41 Download gff for
BO16458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..894 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:41 Download gff for
BO16458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
2L | 10010737..10011474 | 53..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:01 Download gff for
BO16458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
arm_2L | 10010737..10011474 | 53..790 | 100 | | Plus |
BO16458.complete Sequence
1279 bp assembled on 2006-10-11
GenBank Submission: FJ633838
> BO16458.complete
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGC
ACTTCTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCC
TTCTGGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTC
CGCCAAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAG
AAAGCGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGT
GATGTGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCAT
CAAAGAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTG
CCGATGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAG
CCCAAGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGA
GAGCTCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACG
TTGCTGGCAACGCAAGCTTTCTAGACCAT
BO16458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RA | 1248 | CG4758-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Trp1-RB | 1287 | CG4758-PB | 76..1284 | 53..1261 | 6045 | 100 | Plus |
Trp1-RD | 1158 | CG4758-PD | 1..1154 | 17..1170 | 5770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-RA | 2045 | CG4758-RA | 121..1365 | 17..1261 | 6225 | 100 | Plus |
Trp1-RB | 2093 | CG4758-RB | 205..1413 | 53..1261 | 6045 | 100 | Plus |
Trp1-RD | 1484 | CG4758-RD | 121..1274 | 17..1170 | 5770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10010737..10011552 | 53..868 | 4080 | 100 | Plus |
2L | 23513712 | 2L | 10011605..10011908 | 867..1170 | 1520 | 100 | Plus |
2L | 23513712 | 2L | 10012399..10012490 | 1170..1261 | 460 | 100 | Plus |
2L | 23513712 | 2L | 10009501..10009537 | 17..53 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 6452..6494 | 912..953 | 113 | 76.7 | Plus |
BO16458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:34 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 1..1248 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:11 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 116..1363 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:56 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..1365 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:34 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 116..1363 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:10 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Trp1-RA | 121..1365 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:10 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
2L | 10010737..10011552 | 53..868 | 100 | -> | Plus |
2L | 10011607..10011908 | 869..1170 | 100 | -> | Plus |
2L | 10012400..10012490 | 1171..1263 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:56 Download gff for
BO16458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10009501..10009536 | 17..52 | 100 | -> | Plus |
arm_2L | 10010737..10011552 | 53..868 | 100 | -> | Plus |
arm_2L | 10011607..10011908 | 869..1170 | 100 | -> | Plus |
arm_2L | 10012400..10012490 | 1171..1263 | 97 | | Plus |
BO16458.pep Sequence
Translation from 16 to 1279
> BO16458.pep
MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH
IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK
KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG
GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF
GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF
IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK
KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT
DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD
YEIISSSEVQNVAGNASFLDH
BO16458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Trp1-PA | 415 | CG4758-PA | 1..415 | 1..415 | 2161 | 100 | Plus |
Trp1-PB | 428 | CG4758-PB | 26..428 | 13..415 | 2102 | 100 | Plus |
Trp1-PD | 385 | CG4758-PD | 1..385 | 1..385 | 2014 | 100 | Plus |
Trp1-PC | 398 | CG4758-PC | 26..398 | 13..385 | 1955 | 100 | Plus |