Clone BO16458 Report

Search the DGRC for BO16458

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptTrp1-RA
Protein status:BO16458.pep: validated full length
Sequenced Size:1279

Clone Sequence Records

BO16458.3prime Sequence

944 bp (778 high quality bases) assembled on 2006-10-13

> BO16458.3prime
ATGGTCTAGAAAGCTTGCGTTGCCAGCAACGTTTTGGACTTCACTTGAAC
TGATTATCTCGTAATCTTTACTCGAGCTCTCCGAATCCGATCCCGAGTTG
CGTGGCGTTCCAGCTTTGGAATCCTTGGGCTGCGCCTTCGTTTCTTCTTC
ATCCACATCGTCTTCCTCGTAGTCATCGGCACCCACTTTGCGACGTTTGC
GGATCTCCATGTCGGTGTCATGTTCTTTGATGAGCTCGATTTTCTCTGGT
TCAAGCGTGGAAACCTCAGCATCCACATCACCGTCAGCGTCTCCATCCGC
ATCCACGGCTGTGTCCTCGGCATCGCTTTCTTTTTCCTTCTTCTTGTCCT
TCGATTTCGATTTCTTGTCGGTCTTGGCGGACGAATTATTTGGGTCACTG
TTATAGTTGCTCTCATATAGTGGCCAGAAGGAGGCGAAGAAGCTCACATC
CTCAGTCAGGTTGGGGAAGATCCAGAAGTGCAACTTGCCGCCGGTTAATG
CCCACACGATGATGAACACAATTAGACGTACAATTGTCAGAGCCAGGATG
AAAACAAGGAAGCCGGCAGCCGCAATGGACAAGTAGTAGACACCCTTGCG
TAGCAGTGGAGGCCACAGAGGGAATAGGCAAATGCCAACGGCGCCAAGTA
GCAGGATGAAGCCGAATATCCAGTAGTGGAGCGGTATGGGATCGTAGATC
CAGACGTATGCCTCGGAGCCGTCCACGAAGATCTGCTCAGGATGCATGTC
CAGGCGGATCTTGCGCTTTTTCTTCTCCTTTTTCTCCTTCTCTTTTTCGT
TGCCAGACGCACCTCCGTCTCCTTGGCCATTATCGCCTTCCGGATCGGTA
TCCTTCTTCTCATCCTTTGCTTTGTCCTTTTCCTTTATCTGGGTCTTCTC
CTTTGTCCGCTTCTTGTCGCTTCCAGACTTTCCTCTGATCTCCT

BO16458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4758-PA 1248 Trp1-RA 379..1245 885..19 4310 99.8 Minus
CG4758-PB 1287 Trp1-RB 418..1284 885..19 4310 99.8 Minus
CG4758-PA 1248 Trp1-RA 320..354 944..910 150 97.1 Minus
CG4758-PB 1287 Trp1-RB 359..393 944..910 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RB 2093 CG4758-RB 488..1413 944..19 4510 99.4 Minus
Trp1-RA 2045 CG4758-RA 440..1365 944..19 4510 99.4 Minus
Trp1-RC 1532 CG4758-RC 488..1322 944..110 4055 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10011020..10011552 944..412 2500 97.9 Minus
2L 23513712 2L 10011605..10011908 413..110 1520 100 Minus
2L 23513712 2L 10012399..10012490 110..19 460 100 Minus
Blast to na_te.dros performed 2015-02-10 21:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 284..331 904..857 123 72.9 Minus
TAHRE 10463 TAHRE OSV 10463bp 6452..6494 368..327 113 76.7 Minus

BO16458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:44 Download gff for BO16458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4758-PB 359..1287 15..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:36 Download gff for BO16458.3prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 440..1368 15..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:22 Download gff for BO16458.3prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 440..1368 15..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:22 Download gff for BO16458.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10011020..10011552 412..944 98 -> Minus
2L 10011607..10011908 110..411 100 -> Minus
2L 10012400..10012493 15..109 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:36 Download gff for BO16458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10011020..10011552 412..944 98 -> Minus
arm_2L 10011607..10011908 110..411 100 -> Minus
arm_2L 10012400..10012493 15..109 97   Minus

BO16458.5prime Sequence

790 bp (773 high quality bases) assembled on 2006-10-13

> BO16458.5prime
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGC

BO16458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4758-PA 1248 Trp1-RA 1..774 17..790 3870 100 Plus
CG4758-PB 1287 Trp1-RB 76..813 53..790 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RD 1484 CG4758-RD 121..894 17..790 3870 100 Plus
Trp1-RA 2045 CG4758-RA 121..894 17..790 3870 100 Plus
Trp1-RC 1532 CG4758-RC 205..942 53..790 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011474 53..790 3690 100 Plus
2L 23513712 2L 10009501..10009537 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:22:58 has no hits.

BO16458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:46 Download gff for BO16458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4758-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:01 Download gff for BO16458.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..894 17..790 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:41 Download gff for BO16458.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..894 17..790 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:41 Download gff for BO16458.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10009501..10009536 17..52 100 -> Plus
2L 10010737..10011474 53..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:01 Download gff for BO16458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10009501..10009536 17..52 100 -> Plus
arm_2L 10010737..10011474 53..790 100   Plus

BO16458.complete Sequence

1279 bp assembled on 2006-10-11

GenBank Submission: FJ633838

> BO16458.complete
GAAGTTATCAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGG
ATGAATACACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGAC
GAGAAGAACGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGAC
CAAATTCCTGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCG
ATGCTCTGCTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACC
ACCCGGGAGCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTT
CTTCCATCGCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAA
AGTCTGGAGGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAA
AAGGACAAGGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAA
TGGCCAAGGAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAA
AGGAGAAGAAAAAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATC
TTCGTGGACGGCTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCT
CCACTACTGGATATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTT
GCCTATTCCCTCTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTG
TCCATTGCGGCTGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGT
ACGTCTAATTGTGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGC
ACTTCTGGATCTTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCC
TTCTGGCCACTATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTC
CGCCAAGACCGACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAG
AAAGCGATGCCGAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGT
GATGTGGATGCTGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCAT
CAAAGAACATGACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTG
CCGATGACTACGAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAG
CCCAAGGATTCCAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGA
GAGCTCGAGTAAAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACG
TTGCTGGCAACGCAAGCTTTCTAGACCAT

BO16458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RA 1248 CG4758-PA 1..1245 17..1261 6225 100 Plus
Trp1-RB 1287 CG4758-PB 76..1284 53..1261 6045 100 Plus
Trp1-RD 1158 CG4758-PD 1..1154 17..1170 5770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RA 2045 CG4758-RA 121..1365 17..1261 6225 100 Plus
Trp1-RB 2093 CG4758-RB 205..1413 53..1261 6045 100 Plus
Trp1-RD 1484 CG4758-RD 121..1274 17..1170 5770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011552 53..868 4080 100 Plus
2L 23513712 2L 10011605..10011908 867..1170 1520 100 Plus
2L 23513712 2L 10012399..10012490 1170..1261 460 100 Plus
2L 23513712 2L 10009501..10009537 17..53 185 100 Plus
Blast to na_te.dros performed 2014-11-27 16:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6452..6494 912..953 113 76.7 Plus

BO16458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:34 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 1..1248 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:11 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 116..1363 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:56 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..1365 17..1263 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:34 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 116..1363 17..1265 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:10 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..1365 17..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:10 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10009501..10009536 17..52 100 -> Plus
2L 10010737..10011552 53..868 100 -> Plus
2L 10011607..10011908 869..1170 100 -> Plus
2L 10012400..10012490 1171..1263 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:56 Download gff for BO16458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10009501..10009536 17..52 100 -> Plus
arm_2L 10010737..10011552 53..868 100 -> Plus
arm_2L 10011607..10011908 869..1170 100 -> Plus
arm_2L 10012400..10012490 1171..1263 97   Plus

BO16458.pep Sequence

Translation from 16 to 1279

> BO16458.pep
MSEKKRARRRKDEYTEPGAQKVDKPSKDEKNVAKWLKKNVKTKKTKFLSH
IVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFLDVMLEHKFFHRAK
KVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKKDTDPEGDNGQGDG
GASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYVWIYDPIPLHYWIF
GFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLVFILALTIVRLIVF
IIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNYNSDPNNSSAKTDK
KSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTLEPEKIELIKEHDT
DMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTPRNSGSDSESSSKD
YEIISSSEVQNVAGNASFLDH

BO16458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-PA 415 CG4758-PA 1..415 1..415 2161 100 Plus
Trp1-PB 428 CG4758-PB 26..428 13..415 2102 100 Plus
Trp1-PD 385 CG4758-PD 1..385 1..385 2014 100 Plus
Trp1-PC 398 CG4758-PC 26..398 13..385 1955 100 Plus