Clone Sequence Records
BO16459.3prime Sequence
703 bp (605 high quality bases) assembled on 2006-10-13
> BO16459.3prime
ATGGTCTAGAAAGCTTGCCAGCGTTGGCATGTTGCGCCGATGTCCGTTGC
CGGAACCGCTGGACTCCGCCTCCTGCTGTGCCTTCTGTTTGGCACGGCGA
GCCTTTTGGCGTGTGTGCTCGATCTGGAAGTCCTCTACGCGCAGATTCAG
TCGCATCATATTGTTGATGATGAACTCCTCCTCCACGATATGCTCCTCGG
GTGAACGCAGCACTGCCAACGTCTCGCAGAGACCAGTACACGTCTTTCGC
ACCTTGTGTCGGCTTAGTGAAGCCCCAATAATGACCAGAGCCACCTTGAA
GATCACGCGGATGCCTTCGGCTAGAAAGCAATCCCATACTCGCAGCAGTG
TCTCCCAGGGCAGAGTCCGCGTCATCGCGCACAGGAACCAGTCGGTCATG
TAGAGCAGCGGCTCCACTTTGTGCTTCTGCAGGTGCCGGTACACGGGCGG
GCATGTCTTCTTCAGCAGACCCTCCAGGATGCCAGCATCGTTCTGGATCA
CCTCCAAACCGGGTATGAAATAGTCCTGCAGGTATACATCGCACACGCTG
ACAAACACCCAGAAGGCGTCCTCCGCGGGCAGGTGCATCAATAGGAACGC
TGCTATTGGTGCTTGCGCCTGGCAGAAGCCCACCTTGGGATTGTATATCG
AGTAGGCCTTTAGCACATTAAAGAGCTCGATTTGTCCGACCTTCTGCTCG
TCG
BO16459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5344-PA | 1092 | wkd-RA | 405..1089 | 703..19 | 3400 | 99.8 | Minus |
CG5344-PB | 1092 | wkd-RB | 405..1089 | 703..19 | 3400 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 2119 | CG5344-RB | 770..1454 | 703..19 | 3410 | 99.9 | Minus |
wkd-RA | 2054 | CG5344-RA | 705..1389 | 703..19 | 3410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11584124..11584640 | 535..19 | 2585 | 100 | Minus |
3R | 32079331 | 3R | 11583898..11584065 | 703..536 | 825 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-08 11:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 4415..4497 | 84..2 | 109 | 62.4 | Minus |
BO16459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:46 Download gff for
BO16459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5344-PB | 405..1092 | 16..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:51 Download gff for
BO16459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 705..1389 | 19..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:18 Download gff for
BO16459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 705..1389 | 19..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:18 Download gff for
BO16459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11583898..11584065 | 536..703 | 99 | -> | Minus |
3R | 11584124..11584640 | 19..535 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:51 Download gff for
BO16459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7409620..7409787 | 536..703 | 99 | -> | Minus |
arm_3R | 7409846..7410362 | 19..535 | 100 | | Minus |
BO16459.5prime Sequence
766 bp (661 high quality bases) assembled on 2006-10-13
> BO16459.5prime
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCC
BO16459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5344-PA | 1092 | wkd-RA | 1..750 | 17..766 | 3725 | 99.8 | Plus |
CG5344-PB | 1092 | wkd-RB | 1..750 | 17..766 | 3725 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 2119 | CG5344-RB | 366..1115 | 17..766 | 3735 | 99.9 | Plus |
wkd-RA | 2054 | CG5344-RA | 301..1050 | 17..766 | 3735 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11583699..11584065 | 222..588 | 1820 | 99.7 | Plus |
3R | 32079331 | 3R | 11583350..11583556 | 17..223 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 11584124..11584301 | 589..766 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:58:31 has no hits.
BO16459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:47 Download gff for
BO16459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5344-PB | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:56 Download gff for
BO16459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 299..1050 | 13..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:10 Download gff for
BO16459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 299..1050 | 13..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:10 Download gff for
BO16459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11583348..11583556 | 13..223 | 99 | -> | Plus |
3R | 11583701..11584065 | 224..588 | 99 | -> | Plus |
3R | 11584124..11584301 | 589..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:56 Download gff for
BO16459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7409070..7409278 | 13..223 | 99 | -> | Plus |
arm_3R | 7409423..7409787 | 224..588 | 99 | -> | Plus |
arm_3R | 7409846..7410023 | 589..766 | 100 | | Plus |
BO16459.complete Sequence
1123 bp assembled on 2006-10-11
GenBank Submission: FJ633839
> BO16459.complete
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCCTGGGAGACACTGCTGCGAGTATGGGATTGCTTTC
TAGCCGAAGGCATCCGCGTGATCTTCAAGGTGGCTCTGGTCATTATTGGG
GCTTCACTAAGCCGACACAAGGTGCGAAAGACGTGTACTGGTCTCTGCGA
GACGTTGGCAGTGCTGCGTTCACCCGAGGAGCATATCGTGGAGGAGGAGT
TCATCATCAACAATATGATGCGACTGAATCTGCGCGTAGAGGACTTCCAG
ATCGAGCACACACGCCAAAAGGCTCGCCGTGCCAAACAGAAGGCACAGCA
GGAGGCGGAGTCCAGCGGTTCCGGCAACGGACATCGGCGCAACATGCCAA
CGCTGGCAAGCTTTCTAGACCAT
BO16459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 1092 | CG5344-PB | 1..1089 | 17..1105 | 5430 | 99.9 | Plus |
wkd-RA | 1092 | CG5344-PA | 1..1089 | 17..1105 | 5430 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-RB | 2119 | CG5344-RB | 366..1454 | 17..1105 | 5430 | 99.9 | Plus |
wkd-RA | 2054 | CG5344-RA | 301..1389 | 17..1105 | 5430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11584124..11584640 | 589..1105 | 2585 | 100 | Plus |
3R | 32079331 | 3R | 11583699..11584065 | 222..588 | 1820 | 99.7 | Plus |
3R | 32079331 | 3R | 11583350..11583556 | 17..223 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:12:26 has no hits.
BO16459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:36 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RB | 1..1092 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:13 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RB | 364..1454 | 13..1105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:16 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 301..1389 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:36 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RB | 364..1454 | 13..1105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:32 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wkd-RA | 301..1389 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:32 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11583350..11583556 | 17..223 | 100 | -> | Plus |
3R | 11583701..11584065 | 224..588 | 99 | -> | Plus |
3R | 11584124..11584640 | 589..1107 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:16 Download gff for
BO16459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7409072..7409278 | 17..223 | 100 | -> | Plus |
arm_3R | 7409423..7409787 | 224..588 | 99 | -> | Plus |
arm_3R | 7409846..7410362 | 589..1107 | 99 | | Plus |
BO16459.pep Sequence
Translation from 16 to 1123
> BO16459.pep
MATAPRSLDTISLCSTVSSCPDRNGFYGGFQRTDKPKEPLSKAQIIAREK
KWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPKAWFYLSGAYLLKKKN
PNVYNELLEKPGNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQIELFNVLK
AYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDVYLQDYFIPG
LEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLP
WETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTGLCETLAVL
RSPEEHIVEEEFIINNMMRLNLRVEDFQIEHTRQKARRAKQKAQQEAESS
GSGNGHRRNMPTLASFLDH
BO16459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wkd-PB | 363 | CG5344-PB | 1..363 | 1..363 | 1932 | 100 | Plus |
wkd-PA | 363 | CG5344-PA | 1..363 | 1..363 | 1932 | 100 | Plus |
RN-tre-PB | 457 | CG8085-PB | 78..307 | 48..277 | 341 | 33.8 | Plus |
RN-tre-PE | 468 | CG8085-PE | 78..307 | 48..277 | 341 | 33.8 | Plus |
RN-tre-PC | 485 | CG8085-PC | 78..307 | 48..277 | 341 | 33.8 | Plus |