Clone BO16459 Report

Search the DGRC for BO16459

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:59
Vector:pDNR-Dual
Associated Gene/Transcriptwkd-RA
Protein status:BO16459.pep: validated full length
Sequenced Size:1123

Clone Sequence Records

BO16459.3prime Sequence

703 bp (605 high quality bases) assembled on 2006-10-13

> BO16459.3prime
ATGGTCTAGAAAGCTTGCCAGCGTTGGCATGTTGCGCCGATGTCCGTTGC
CGGAACCGCTGGACTCCGCCTCCTGCTGTGCCTTCTGTTTGGCACGGCGA
GCCTTTTGGCGTGTGTGCTCGATCTGGAAGTCCTCTACGCGCAGATTCAG
TCGCATCATATTGTTGATGATGAACTCCTCCTCCACGATATGCTCCTCGG
GTGAACGCAGCACTGCCAACGTCTCGCAGAGACCAGTACACGTCTTTCGC
ACCTTGTGTCGGCTTAGTGAAGCCCCAATAATGACCAGAGCCACCTTGAA
GATCACGCGGATGCCTTCGGCTAGAAAGCAATCCCATACTCGCAGCAGTG
TCTCCCAGGGCAGAGTCCGCGTCATCGCGCACAGGAACCAGTCGGTCATG
TAGAGCAGCGGCTCCACTTTGTGCTTCTGCAGGTGCCGGTACACGGGCGG
GCATGTCTTCTTCAGCAGACCCTCCAGGATGCCAGCATCGTTCTGGATCA
CCTCCAAACCGGGTATGAAATAGTCCTGCAGGTATACATCGCACACGCTG
ACAAACACCCAGAAGGCGTCCTCCGCGGGCAGGTGCATCAATAGGAACGC
TGCTATTGGTGCTTGCGCCTGGCAGAAGCCCACCTTGGGATTGTATATCG
AGTAGGCCTTTAGCACATTAAAGAGCTCGATTTGTCCGACCTTCTGCTCG
TCG

BO16459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5344-PA 1092 wkd-RA 405..1089 703..19 3400 99.8 Minus
CG5344-PB 1092 wkd-RB 405..1089 703..19 3400 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 2119 CG5344-RB 770..1454 703..19 3410 99.9 Minus
wkd-RA 2054 CG5344-RA 705..1389 703..19 3410 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11584124..11584640 535..19 2585 100 Minus
3R 32079331 3R 11583898..11584065 703..536 825 99.4 Minus
Blast to na_te.dros performed 2015-02-08 11:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy 7469 gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). 4415..4497 84..2 109 62.4 Minus

BO16459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:46 Download gff for BO16459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5344-PB 405..1092 16..703 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:51 Download gff for BO16459.3prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 705..1389 19..703 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:18 Download gff for BO16459.3prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 705..1389 19..703 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:18 Download gff for BO16459.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11583898..11584065 536..703 99 -> Minus
3R 11584124..11584640 19..535 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:51 Download gff for BO16459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7409620..7409787 536..703 99 -> Minus
arm_3R 7409846..7410362 19..535 100   Minus

BO16459.5prime Sequence

766 bp (661 high quality bases) assembled on 2006-10-13

> BO16459.5prime
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCC

BO16459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5344-PA 1092 wkd-RA 1..750 17..766 3725 99.8 Plus
CG5344-PB 1092 wkd-RB 1..750 17..766 3725 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 2119 CG5344-RB 366..1115 17..766 3735 99.9 Plus
wkd-RA 2054 CG5344-RA 301..1050 17..766 3735 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11583699..11584065 222..588 1820 99.7 Plus
3R 32079331 3R 11583350..11583556 17..223 1035 100 Plus
3R 32079331 3R 11584124..11584301 589..766 890 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:58:31 has no hits.

BO16459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:47 Download gff for BO16459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5344-PB 1..750 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:56 Download gff for BO16459.5prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 299..1050 13..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:10 Download gff for BO16459.5prime
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 299..1050 13..766 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:10 Download gff for BO16459.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11583348..11583556 13..223 99 -> Plus
3R 11583701..11584065 224..588 99 -> Plus
3R 11584124..11584301 589..766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:56 Download gff for BO16459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7409070..7409278 13..223 99 -> Plus
arm_3R 7409423..7409787 224..588 99 -> Plus
arm_3R 7409846..7410023 589..766 100   Plus

BO16459.complete Sequence

1123 bp assembled on 2006-10-11

GenBank Submission: FJ633839

> BO16459.complete
GAAGTTATCAGTCGACATGGCCACGGCACCGCGATCCCTGGATACCATCT
CCCTCTGCTCGACCGTTTCCAGCTGCCCGGACCGAAATGGCTTCTATGGC
GGTTTCCAGCGCACAGACAAGCCAAAGGAGCCGCTGTCCAAGGCACAGAT
CATCGCGCGGGAGAAGAAGTGGCTCTACATGATCGACAACTGGTCCATTT
ACATGTCAAAAAACTACAAAAAGATCCGAGATCGCTGTCGCAAGGGCATA
CCCAAGTCGGTGCGACCCAAGGCCTGGTTCTATTTATCGGGGGCGTATCT
GCTAAAGAAGAAGAACCCCAACGTTTACAACGAGCTTCTGGAAAAGCCCG
GTAACCCGACGACCATCGAAGAGATCAAGAAGGATAAGCATCGCCAGTTC
CCGTTCCATGAAATGTTTCTCGACGAGCAGAAGGTCGGACAAATCGAGCT
CTTTAATGTGCTAAAGGCCTACTCGATATACAATCCCAAGGTGGGCTTCT
GCCAGGCGCAAGCACCAATAGCAGCGTTCCTATTGATGCACCTGCCCGCG
GAGGACGCCTTCTGGGTGTTTGTCAGCGTGTGCGATGTATACCTGCAGGA
CTATTTCATACCCGGTTTGGAGGTGATCCAGAACGATGCTGGCATCCTGG
AGGGTCTGCTGAAGAAGACATGCCCGCCCGTGTACCGGCACCTGCAGAAG
CACAAAGTGGAGCCGCTGCTCTACATGACCGACTGGTTCCTGTGCGCGAT
GACGCGGACTCTGCCCTGGGAGACACTGCTGCGAGTATGGGATTGCTTTC
TAGCCGAAGGCATCCGCGTGATCTTCAAGGTGGCTCTGGTCATTATTGGG
GCTTCACTAAGCCGACACAAGGTGCGAAAGACGTGTACTGGTCTCTGCGA
GACGTTGGCAGTGCTGCGTTCACCCGAGGAGCATATCGTGGAGGAGGAGT
TCATCATCAACAATATGATGCGACTGAATCTGCGCGTAGAGGACTTCCAG
ATCGAGCACACACGCCAAAAGGCTCGCCGTGCCAAACAGAAGGCACAGCA
GGAGGCGGAGTCCAGCGGTTCCGGCAACGGACATCGGCGCAACATGCCAA
CGCTGGCAAGCTTTCTAGACCAT

BO16459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 1092 CG5344-PB 1..1089 17..1105 5430 99.9 Plus
wkd-RA 1092 CG5344-PA 1..1089 17..1105 5430 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-RB 2119 CG5344-RB 366..1454 17..1105 5430 99.9 Plus
wkd-RA 2054 CG5344-RA 301..1389 17..1105 5430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11584124..11584640 589..1105 2585 100 Plus
3R 32079331 3R 11583699..11584065 222..588 1820 99.7 Plus
3R 32079331 3R 11583350..11583556 17..223 1035 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:12:26 has no hits.

BO16459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:36 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RB 1..1092 17..1108 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:13 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RB 364..1454 13..1105 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:42:16 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 301..1389 17..1107 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:36 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RB 364..1454 13..1105 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:32 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
wkd-RA 301..1389 17..1107 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:32 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11583350..11583556 17..223 100 -> Plus
3R 11583701..11584065 224..588 99 -> Plus
3R 11584124..11584640 589..1107 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:42:16 Download gff for BO16459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7409072..7409278 17..223 100 -> Plus
arm_3R 7409423..7409787 224..588 99 -> Plus
arm_3R 7409846..7410362 589..1107 99   Plus

BO16459.pep Sequence

Translation from 16 to 1123

> BO16459.pep
MATAPRSLDTISLCSTVSSCPDRNGFYGGFQRTDKPKEPLSKAQIIAREK
KWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPKAWFYLSGAYLLKKKN
PNVYNELLEKPGNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQIELFNVLK
AYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDVYLQDYFIPG
LEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLP
WETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTGLCETLAVL
RSPEEHIVEEEFIINNMMRLNLRVEDFQIEHTRQKARRAKQKAQQEAESS
GSGNGHRRNMPTLASFLDH

BO16459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
wkd-PB 363 CG5344-PB 1..363 1..363 1932 100 Plus
wkd-PA 363 CG5344-PA 1..363 1..363 1932 100 Plus
RN-tre-PB 457 CG8085-PB 78..307 48..277 341 33.8 Plus
RN-tre-PE 468 CG8085-PE 78..307 48..277 341 33.8 Plus
RN-tre-PC 485 CG8085-PC 78..307 48..277 341 33.8 Plus