Clone Sequence Records
BO16461.3prime Sequence
585 bp (549 high quality bases) assembled on 2006-10-13
> BO16461.3prime
ATGGTCTAGAAAGCTTGCAAAGCCAGCGAGCCGCTTGGCCACCACTCCGC
TCATAAGCACGAGCAGAAGGGTCCGCATGGTCAATCCTTCCAAGGCCCGA
GCTCCGCCGGTGTGGGAGCGAACGGATGCCTGGATTGGAGCGGCGACATC
CTGTGCCTGCTGCACTTGCTGCACCTGCTGCGATCCTGGTTGATCAGCGG
CCATGGGCGCCAGTGGTGCTGGACCCTCGCCGGCGGAAGCAGCTGGTGGC
GGGGGTGCCGGGTAGCAGGCAATCTTCTCCACCTCTATCATCTTGGTGCT
GTCAGCCGGATCCGTTTCGTTTACCTTGGTGGGCACACAAATAATGCCTC
CAGGCGGGGGGGGAGCAGCTGGGTCCGGCGCGGTCATGTTAGAGGTCTCT
GGATTAAAGGGCATTGGTGCCATGGGTACGGCTGGCTGTTGGGCATCTTG
GGTGGTGTTGGAAGAGGGAACTGGGGCCGCTGGAACTGCTCCCGGGGCAG
CAGCCACACCTGCTGCATTTATCACAGTGGTGCCATCACTGGCATTCACT
GGCACGCCGTTGTTAATGATGATTATGCGATCCTG
BO16461.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-PA | 1410 | CG5273-RA | 841..1407 | 585..19 | 2810 | 99.8 | Minus |
CG5273-PC | 1410 | CG5273-RC | 841..1407 | 585..19 | 2810 | 99.8 | Minus |
CG5273-PB | 1410 | CG5273-RB | 841..1407 | 585..19 | 2810 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-RB | 2193 | CG5273-RB | 1046..1612 | 585..19 | 2820 | 99.8 | Minus |
CG5273-RC | 2103 | CG5273-RC | 956..1522 | 585..19 | 2820 | 99.8 | Minus |
CG5273-RA | 2124 | CG5273-RA | 977..1543 | 585..19 | 2820 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 760792..761358 | 585..19 | 2820 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:48:39 has no hits.
BO16461.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:49 Download gff for
BO16461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-PB | 841..1410 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:51 Download gff for
BO16461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RA | 977..1543 | 19..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:51 Download gff for
BO16461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RA | 977..1543 | 19..585 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:51 Download gff for
BO16461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 760792..761358 | 19..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:51 Download gff for
BO16461.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 654825..655391 | 19..585 | 99 | | Minus |
BO16461.5prime Sequence
657 bp (518 high quality bases) assembled on 2006-10-13
> BO16461.5prime
GAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGGCGCCTGTTCCCCTT
TCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGCTGACGCACGGCGGA
GACAATGTTGTGGACGCCCGGCGTAACCAGGGCAACCAGCGGAAGACCTC
CTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGACGCAGCCCAGCTACA
ACACGAATGGCCACGCCGCCGGGAACTCTCATGCAGATGTGGCCAAACTG
AGTTACCCCAACTACAACTCGCAGCCGAATCGACCAATGGCCGCGGGCTC
ATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTGGAATGTGCCGCAGG
GTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCGGAGGAGCCCGACCC
AACATGCACGAGCCGCCGCCAGCCTACCATGCCCCCAACTACGGAGCAGC
TCCTCCCAACTATGGAGCCGCCACCGGATCGAATGTCCATCAGCCGCAGT
ACTCTGGAGTGCCAGCTGGGAGCACCTACTACCCGGCTGCANGACCCGGG
AGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACATACTATCCGTCCGC
CGGCCATGTTCCCATGGGCGGTGGCTATCACCCCGCTGCTGCTCCGCCTC
GGGGGGC
BO16461.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-PA | 1410 | CG5273-RA | 1..641 | 17..657 | 3036 | 98.9 | Plus |
CG5273-PC | 1410 | CG5273-RC | 1..641 | 17..657 | 3036 | 98.9 | Plus |
CG5273-PB | 1410 | CG5273-RB | 1..641 | 17..657 | 3036 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-RB | 2193 | CG5273-RB | 204..846 | 15..657 | 3114 | 99.1 | Plus |
CG5273-RC | 2103 | CG5273-RC | 114..756 | 15..657 | 3114 | 99.1 | Plus |
CG5273-RA | 2124 | CG5273-RA | 135..777 | 15..657 | 3114 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 759797..760439 | 15..657 | 3114 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:41:59 has no hits.
BO16461.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:50 Download gff for
BO16461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-PB | 1..641 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:26:35 Download gff for
BO16461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RA | 133..777 | 12..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:33 Download gff for
BO16461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RA | 133..777 | 12..657 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:33 Download gff for
BO16461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 759795..760439 | 12..657 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:26:35 Download gff for
BO16461.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 653828..654472 | 12..657 | 98 | | Plus |
BO16461.complete Sequence
1441 bp assembled on 2007-03-23
GenBank Submission: FJ633840
> BO16461.complete
GAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGGCGCCTGTTCCCCTT
TCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGCTGACGCACGGCGGA
GACAATGTTGTGGACGCCCGGCGTAACCAGGGCAACCAGCGGAAGACCTC
CTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGACGCAGCCCAGCTACA
ACACGAATGGCCACGCCGCCGGGAACTCTCATGCAGATGTGGCCAAACTG
AGTTACCCCAACTACAACTCGCAGCCGAATCGACCAATGGCCGCGGGCTC
ATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTGGAATGTGCCGCAGG
GTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCGGAGGAGCCCGACCC
AACATGCACGAGCCGCCGCCAGCCTACCATGCCCCCAACTACGGAGCAGC
TCCTCCCAACTATGGAGCCGCCACCGGATCGAATGTCCATCAGCCGCAGT
ACTCTGGAGTGCCAGCTGGAGCCACCTACTACCCGGCTGCAGGACCCGGC
AGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACATACTATCCGTCCGC
CGGCCATGTTCCCATGGGCGGTGGCTATCACCCAGCTGCTGCTCCGCCTC
CGGGGGCCACCTACTACCAGGCGGGATCTGCTTTGCCGCCCGGAGCCACC
TATTATTCTGCACCACCACAACAGTCCTCCTCTGGCTTGGGCTTCGGAAC
TGGACTGCTTGCTGGCGGCTTGGGAGGTGCCCTGCTGGGTCACGCCCTCA
CTCCCTCGGGAGGCAGTTCCTCCTCGCAGCCGGTTGCCGCAGCTCCAGCT
GCTGGTCAGGATCGCATAATCATCATTAACAACGGCGTGCCAGTGAATGC
CAGTGATGGCACCACTGTGATAAATGCAGCAGGTGTGGCTGCTGCCCCGG
GAGCAGTTCCAGCGGCCCCAGTTCCCTCTTCCAACACCACCCAAGATGCC
CAACAGCCAGCCGTACCCATGGCACCAATGCCCTTTAATCCAGAGACCTC
TAACATGACCGCGCCGGACCCAGCTGCTCCCCCCCCGCCTGGAGGCATTA
TTTGTGTGCCCACCAAGGTAAACGAAACGGATCCGGCTGACAGCACCAAG
ATGATAGAGGTGGAGAAGATTGCCTGCTACCCGGCACCCCCGCCACCAGC
TGCTTCCGCCGGCGAGGGTCCAGCACCACTGGCGCCCATGGCCGCTGATC
AACCAGGATCGCAGCAGGTGCAGCAAGTGCAGCAGGCACAGGATGTCGCC
GCTCCAATCCAGGCATCCGTTCGCTCCCACACCGGCGGAGCTCGGGCCTT
GGAAGGATTGACCATGCGGACCCTTCTGCTCGTGCTTATGAGCGGAGTGG
TGGCCAAGCGGCTCGCTGGCTTTGCAAGCTTTCTAGACCAT
BO16461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-RB | 1410 | CG5273-PB | 1..1407 | 17..1423 | 7020 | 99.9 | Plus |
CG5273-RC | 1410 | CG5273-PC | 1..1407 | 17..1423 | 7020 | 99.9 | Plus |
CG5273-RA | 1410 | CG5273-PA | 1..1407 | 17..1423 | 7020 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-RB | 2193 | CG5273-RB | 204..1612 | 15..1423 | 7030 | 99.9 | Plus |
CG5273-RC | 2103 | CG5273-RC | 114..1522 | 15..1423 | 7030 | 99.9 | Plus |
CG5273-RA | 2124 | CG5273-RA | 135..1543 | 15..1423 | 7030 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 759797..760529 | 15..747 | 3665 | 100 | Plus |
X | 23542271 | X | 760681..761358 | 746..1423 | 3375 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:23:37 has no hits.
BO16461.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:58 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RB | 1..1410 | 17..1424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:53 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RB | 178..1588 | 12..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:35 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RA | 137..1543 | 17..1425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:58 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RB | 178..1588 | 12..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:37 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5273-RA | 137..1543 | 17..1425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:37 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 759799..760528 | 17..746 | 100 | -> | Plus |
X | 760682..761358 | 747..1425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:35 Download gff for
BO16461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 653832..654561 | 17..746 | 100 | -> | Plus |
arm_X | 654715..655391 | 747..1425 | 99 | | Plus |
BO16461.pep Sequence
Translation from 16 to 1441
> BO16461.pep
MMASSGGACSPFAYVAWALFALLLTHGGDNVVDARRNQGNQRKTSSSSSS
SNYGHVTQPSYNTNGHAAGNSHADVAKLSYPNYNSQPNRPMAAGSSGSPG
SAPQPGWNVPQGPPPAYSASNPAGGARPNMHEPPPAYHAPNYGAAPPNYG
AATGSNVHQPQYSGVPAGATYYPAAGPGSGYSPNIPAGATYYPSAGHVPM
GGGYHPAAAPPPGATYYQAGSALPPGATYYSAPPQQSSSGLGFGTGLLAG
GLGGALLGHALTPSGGSSSSQPVAAAPAAGQDRIIIINNGVPVNASDGTT
VINAAGVAAAPGAVPAAPVPSSNTTQDAQQPAVPMAPMPFNPETSNMTAP
DPAAPPPPGGIICVPTKVNETDPADSTKMIEVEKIACYPAPPPPAASAGE
GPAPLAPMAADQPGSQQVQQVQQAQDVAAPIQASVRSHTGGARALEGLTM
RTLLLVLMSGVVAKRLAGFASFLDH
BO16461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5273-PB | 469 | CG5273-PB | 1..469 | 1..469 | 2492 | 100 | Plus |
CG5273-PC | 469 | CG5273-PC | 1..469 | 1..469 | 2492 | 100 | Plus |
CG5273-PA | 469 | CG5273-PA | 1..469 | 1..469 | 2492 | 100 | Plus |
CG31705-PE | 682 | CG31705-PE | 32..618 | 36..430 | 650 | 35.7 | Plus |
CG31705-PD | 682 | CG31705-PD | 32..618 | 36..430 | 650 | 35.7 | Plus |