Clone BO16461 Report

Search the DGRC for BO16461

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG5273-RA
Protein status:BO16461.pep: validated full length
Sequenced Size:1441

Clone Sequence Records

BO16461.3prime Sequence

585 bp (549 high quality bases) assembled on 2006-10-13

> BO16461.3prime
ATGGTCTAGAAAGCTTGCAAAGCCAGCGAGCCGCTTGGCCACCACTCCGC
TCATAAGCACGAGCAGAAGGGTCCGCATGGTCAATCCTTCCAAGGCCCGA
GCTCCGCCGGTGTGGGAGCGAACGGATGCCTGGATTGGAGCGGCGACATC
CTGTGCCTGCTGCACTTGCTGCACCTGCTGCGATCCTGGTTGATCAGCGG
CCATGGGCGCCAGTGGTGCTGGACCCTCGCCGGCGGAAGCAGCTGGTGGC
GGGGGTGCCGGGTAGCAGGCAATCTTCTCCACCTCTATCATCTTGGTGCT
GTCAGCCGGATCCGTTTCGTTTACCTTGGTGGGCACACAAATAATGCCTC
CAGGCGGGGGGGGAGCAGCTGGGTCCGGCGCGGTCATGTTAGAGGTCTCT
GGATTAAAGGGCATTGGTGCCATGGGTACGGCTGGCTGTTGGGCATCTTG
GGTGGTGTTGGAAGAGGGAACTGGGGCCGCTGGAACTGCTCCCGGGGCAG
CAGCCACACCTGCTGCATTTATCACAGTGGTGCCATCACTGGCATTCACT
GGCACGCCGTTGTTAATGATGATTATGCGATCCTG

BO16461.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-PA 1410 CG5273-RA 841..1407 585..19 2810 99.8 Minus
CG5273-PC 1410 CG5273-RC 841..1407 585..19 2810 99.8 Minus
CG5273-PB 1410 CG5273-RB 841..1407 585..19 2810 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 2193 CG5273-RB 1046..1612 585..19 2820 99.8 Minus
CG5273-RC 2103 CG5273-RC 956..1522 585..19 2820 99.8 Minus
CG5273-RA 2124 CG5273-RA 977..1543 585..19 2820 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 760792..761358 585..19 2820 99.8 Minus
Blast to na_te.dros performed on 2015-02-10 20:48:39 has no hits.

BO16461.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:49 Download gff for BO16461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-PB 841..1410 18..585 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:52:51 Download gff for BO16461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 977..1543 19..585 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:51 Download gff for BO16461.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 977..1543 19..585 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:51 Download gff for BO16461.3prime
Subject Subject Range Query Range Percent Splice Strand
X 760792..761358 19..585 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:52:51 Download gff for BO16461.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 654825..655391 19..585 99   Minus

BO16461.5prime Sequence

657 bp (518 high quality bases) assembled on 2006-10-13

> BO16461.5prime
GAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGGCGCCTGTTCCCCTT
TCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGCTGACGCACGGCGGA
GACAATGTTGTGGACGCCCGGCGTAACCAGGGCAACCAGCGGAAGACCTC
CTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGACGCAGCCCAGCTACA
ACACGAATGGCCACGCCGCCGGGAACTCTCATGCAGATGTGGCCAAACTG
AGTTACCCCAACTACAACTCGCAGCCGAATCGACCAATGGCCGCGGGCTC
ATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTGGAATGTGCCGCAGG
GTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCGGAGGAGCCCGACCC
AACATGCACGAGCCGCCGCCAGCCTACCATGCCCCCAACTACGGAGCAGC
TCCTCCCAACTATGGAGCCGCCACCGGATCGAATGTCCATCAGCCGCAGT
ACTCTGGAGTGCCAGCTGGGAGCACCTACTACCCGGCTGCANGACCCGGG
AGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACATACTATCCGTCCGC
CGGCCATGTTCCCATGGGCGGTGGCTATCACCCCGCTGCTGCTCCGCCTC
GGGGGGC

BO16461.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-PA 1410 CG5273-RA 1..641 17..657 3036 98.9 Plus
CG5273-PC 1410 CG5273-RC 1..641 17..657 3036 98.9 Plus
CG5273-PB 1410 CG5273-RB 1..641 17..657 3036 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 2193 CG5273-RB 204..846 15..657 3114 99.1 Plus
CG5273-RC 2103 CG5273-RC 114..756 15..657 3114 99.1 Plus
CG5273-RA 2124 CG5273-RA 135..777 15..657 3114 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 759797..760439 15..657 3114 98.9 Plus
Blast to na_te.dros performed on 2015-02-11 16:41:59 has no hits.

BO16461.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:50 Download gff for BO16461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-PB 1..641 17..657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:26:35 Download gff for BO16461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 133..777 12..657 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:33 Download gff for BO16461.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 133..777 12..657 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:33 Download gff for BO16461.5prime
Subject Subject Range Query Range Percent Splice Strand
X 759795..760439 12..657 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:26:35 Download gff for BO16461.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 653828..654472 12..657 98   Plus

BO16461.complete Sequence

1441 bp assembled on 2007-03-23

GenBank Submission: FJ633840

> BO16461.complete
GAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGGCGCCTGTTCCCCTT
TCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGCTGACGCACGGCGGA
GACAATGTTGTGGACGCCCGGCGTAACCAGGGCAACCAGCGGAAGACCTC
CTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGACGCAGCCCAGCTACA
ACACGAATGGCCACGCCGCCGGGAACTCTCATGCAGATGTGGCCAAACTG
AGTTACCCCAACTACAACTCGCAGCCGAATCGACCAATGGCCGCGGGCTC
ATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTGGAATGTGCCGCAGG
GTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCGGAGGAGCCCGACCC
AACATGCACGAGCCGCCGCCAGCCTACCATGCCCCCAACTACGGAGCAGC
TCCTCCCAACTATGGAGCCGCCACCGGATCGAATGTCCATCAGCCGCAGT
ACTCTGGAGTGCCAGCTGGAGCCACCTACTACCCGGCTGCAGGACCCGGC
AGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACATACTATCCGTCCGC
CGGCCATGTTCCCATGGGCGGTGGCTATCACCCAGCTGCTGCTCCGCCTC
CGGGGGCCACCTACTACCAGGCGGGATCTGCTTTGCCGCCCGGAGCCACC
TATTATTCTGCACCACCACAACAGTCCTCCTCTGGCTTGGGCTTCGGAAC
TGGACTGCTTGCTGGCGGCTTGGGAGGTGCCCTGCTGGGTCACGCCCTCA
CTCCCTCGGGAGGCAGTTCCTCCTCGCAGCCGGTTGCCGCAGCTCCAGCT
GCTGGTCAGGATCGCATAATCATCATTAACAACGGCGTGCCAGTGAATGC
CAGTGATGGCACCACTGTGATAAATGCAGCAGGTGTGGCTGCTGCCCCGG
GAGCAGTTCCAGCGGCCCCAGTTCCCTCTTCCAACACCACCCAAGATGCC
CAACAGCCAGCCGTACCCATGGCACCAATGCCCTTTAATCCAGAGACCTC
TAACATGACCGCGCCGGACCCAGCTGCTCCCCCCCCGCCTGGAGGCATTA
TTTGTGTGCCCACCAAGGTAAACGAAACGGATCCGGCTGACAGCACCAAG
ATGATAGAGGTGGAGAAGATTGCCTGCTACCCGGCACCCCCGCCACCAGC
TGCTTCCGCCGGCGAGGGTCCAGCACCACTGGCGCCCATGGCCGCTGATC
AACCAGGATCGCAGCAGGTGCAGCAAGTGCAGCAGGCACAGGATGTCGCC
GCTCCAATCCAGGCATCCGTTCGCTCCCACACCGGCGGAGCTCGGGCCTT
GGAAGGATTGACCATGCGGACCCTTCTGCTCGTGCTTATGAGCGGAGTGG
TGGCCAAGCGGCTCGCTGGCTTTGCAAGCTTTCTAGACCAT

BO16461.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 1410 CG5273-PB 1..1407 17..1423 7020 99.9 Plus
CG5273-RC 1410 CG5273-PC 1..1407 17..1423 7020 99.9 Plus
CG5273-RA 1410 CG5273-PA 1..1407 17..1423 7020 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-RB 2193 CG5273-RB 204..1612 15..1423 7030 99.9 Plus
CG5273-RC 2103 CG5273-RC 114..1522 15..1423 7030 99.9 Plus
CG5273-RA 2124 CG5273-RA 135..1543 15..1423 7030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 759797..760529 15..747 3665 100 Plus
X 23542271 X 760681..761358 746..1423 3375 99.9 Plus
Blast to na_te.dros performed on 2014-11-27 10:23:37 has no hits.

BO16461.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:58 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RB 1..1410 17..1424 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:53 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RB 178..1588 12..1423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:35 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 137..1543 17..1425 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:58 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RB 178..1588 12..1423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:37 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
CG5273-RA 137..1543 17..1425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:37 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
X 759799..760528 17..746 100 -> Plus
X 760682..761358 747..1425 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:35 Download gff for BO16461.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 653832..654561 17..746 100 -> Plus
arm_X 654715..655391 747..1425 99   Plus

BO16461.pep Sequence

Translation from 16 to 1441

> BO16461.pep
MMASSGGACSPFAYVAWALFALLLTHGGDNVVDARRNQGNQRKTSSSSSS
SNYGHVTQPSYNTNGHAAGNSHADVAKLSYPNYNSQPNRPMAAGSSGSPG
SAPQPGWNVPQGPPPAYSASNPAGGARPNMHEPPPAYHAPNYGAAPPNYG
AATGSNVHQPQYSGVPAGATYYPAAGPGSGYSPNIPAGATYYPSAGHVPM
GGGYHPAAAPPPGATYYQAGSALPPGATYYSAPPQQSSSGLGFGTGLLAG
GLGGALLGHALTPSGGSSSSQPVAAAPAAGQDRIIIINNGVPVNASDGTT
VINAAGVAAAPGAVPAAPVPSSNTTQDAQQPAVPMAPMPFNPETSNMTAP
DPAAPPPPGGIICVPTKVNETDPADSTKMIEVEKIACYPAPPPPAASAGE
GPAPLAPMAADQPGSQQVQQVQQAQDVAAPIQASVRSHTGGARALEGLTM
RTLLLVLMSGVVAKRLAGFASFLDH

BO16461.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5273-PB 469 CG5273-PB 1..469 1..469 2492 100 Plus
CG5273-PC 469 CG5273-PC 1..469 1..469 2492 100 Plus
CG5273-PA 469 CG5273-PA 1..469 1..469 2492 100 Plus
CG31705-PE 682 CG31705-PE 32..618 36..430 650 35.7 Plus
CG31705-PD 682 CG31705-PD 32..618 36..430 650 35.7 Plus