Clone Sequence Records
BO16463.3prime Sequence
665 bp (664 high quality bases) assembled on 2006-10-13
> BO16463.3prime
ATGGTCTAGAAAGCTTGCGCTCATTTTCACGCGTTTCCTTGGTGGTCCAA
TTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATCAAA
TGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCACATC
GGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGATCCG
CACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACAGAG
AGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAGTGC
ATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGATTGG
GCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCATGA
TCCACATCGGTTATGGCGACACGATTCAACTTTCGCTCCTCCATCTCATG
CTCGAACATGGCCGCAAAGACATCGCTGCGCGCTGCCAATATGGCCTTGT
GCGCCTGGAACTCTCGACCGCCCACGGAGAGCGTGACGTCGCTGAACTTC
TCGTTGTCAAATAGATTGCCAAGATCCTCGGACAGCTTGCATTCGGGCAC
TTTGAACTGCACGATATTGGATTGTCCGGAGATGTTCACGCTGTCCGCCA
CGACGCTGACCTCGC
BO16463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 563..1209 | 665..19 | 3235 | 100 | Minus |
CG9924-PE | 2490 | CG9924-RE | 1841..2487 | 665..19 | 3235 | 100 | Minus |
CG9924-PA | 1221 | CG9924-RA | 572..1218 | 665..19 | 3235 | 100 | Minus |
CG9924-PB | 1125 | CG9924-RB | 476..1122 | 665..19 | 3235 | 100 | Minus |
CG9924-PD | 1212 | CG9924-RD | 563..1209 | 665..19 | 3235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RF | 3856 | CG12537-RF | 1082..1728 | 665..19 | 3235 | 100 | Minus |
rdx-RE | 4159 | CG12537-RE | 2279..2925 | 665..19 | 3235 | 100 | Minus |
rdx-RB | 2311 | CG12537-RB | 1101..1747 | 665..19 | 3235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969608..13969790 | 304..486 | 915 | 100 | Plus |
3R | 32079331 | 3R | 13969909..13970091 | 483..665 | 915 | 100 | Plus |
3R | 32079331 | 3R | 13969397..13969541 | 161..305 | 725 | 100 | Plus |
3R | 32079331 | 3R | 13969189..13969330 | 19..160 | 710 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 146..99 | 132 | 75 | Minus |
BO16463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:52 Download gff for
BO16463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 563..1212 | 16..665 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:02 Download gff for
BO16463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 1101..1751 | 15..665 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:51 Download gff for
BO16463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RB | 1101..1751 | 15..665 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:51 Download gff for
BO16463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969397..13969539 | 161..303 | 100 | <- | Plus |
3R | 13969608..13969786 | 304..482 | 100 | <- | Plus |
3R | 13969909..13970091 | 483..665 | 100 | | Plus |
3R | 13969184..13969330 | 15..160 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:02 Download gff for
BO16463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9795119..9795261 | 161..303 | 100 | <- | Plus |
arm_3R | 9794906..9795052 | 15..160 | 98 | <- | Plus |
arm_3R | 9795330..9795508 | 304..482 | 100 | <- | Plus |
arm_3R | 9795631..9795813 | 483..665 | 100 | | Plus |
BO16463.5prime Sequence
673 bp (638 high quality bases) assembled on 2006-10-13
> BO16463.5prime
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAAGATCTT
BO16463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9924-PC | 1212 | CG9924-RC | 1..657 | 17..673 | 3260 | 99.8 | Plus |
CG9924-PD | 1212 | CG9924-RD | 1..657 | 17..673 | 3260 | 99.8 | Plus |
CG9924-PE | 2490 | CG9924-RE | 1291..1935 | 29..673 | 3200 | 99.8 | Plus |
CG9924-PA | 1221 | CG9924-RA | 22..666 | 29..673 | 3200 | 99.8 | Plus |
CG9924-PB | 1125 | CG9924-RB | 1..570 | 104..673 | 2825 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RC | 2802 | CG12537-RC | 360..1016 | 17..673 | 3270 | 99.8 | Plus |
rdx-RF | 3856 | CG12537-RF | 532..1176 | 29..673 | 3210 | 99.8 | Plus |
rdx-RE | 4159 | CG12537-RE | 1729..2373 | 29..673 | 3210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969997..13970206 | 673..464 | 1035 | 99.5 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 465..303 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971105 | 183..28 | 780 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 306..177 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:38:15 has no hits.
BO16463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:53 Download gff for
BO16463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9924-PD | 1..657 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:24 Download gff for
BO16463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 350..1016 | 8..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:32 Download gff for
BO16463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 350..1016 | 8..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:32 Download gff for
BO16463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969997..13970204 | 466..673 | 99 | <- | Minus |
3R | 13970278..13970439 | 304..465 | 100 | <- | Minus |
3R | 13970508..13970629 | 182..303 | 100 | <- | Minus |
3R | 13970952..13971113 | 17..181 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:24 Download gff for
BO16463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9796674..9796835 | 17..181 | 96 | | Minus |
arm_3R | 9795719..9795926 | 466..673 | 99 | <- | Minus |
arm_3R | 9796000..9796161 | 304..465 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 182..303 | 100 | <- | Minus |
BO16463.complete Sequence
1243 bp assembled on 2006-10-11
GenBank Submission: FJ633841
> BO16463.complete
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTC
AGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGC
CATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGA
TGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAG
GTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCCAATCT
AGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCACTCG
AAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGTCAATCTCTCTGTA
GAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCCACAGTGCGGATCA
ATTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCACCGATGTGA
TGGAAACCTCCGGCTGGCAAAATATGATCACAACACATTCACATTTGATA
GCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCCCACCAATTGGACC
ACCAAGGAAACGCGTGAAAATGAGCGCAAGCTTTCTAGACCAT
BO16463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RC | 1212 | CG12537-PC | 1..1209 | 17..1225 | 6045 | 100 | Plus |
rdx-RF | 1221 | CG12537-PF | 22..1218 | 29..1225 | 5985 | 100 | Plus |
rdx-RE | 2490 | CG12537-PE | 1291..2487 | 29..1225 | 5985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-RC | 2802 | CG12537-RC | 360..1568 | 17..1225 | 6045 | 100 | Plus |
rdx-RF | 3856 | CG12537-RF | 532..1728 | 29..1225 | 5985 | 100 | Plus |
rdx-RE | 4159 | CG12537-RE | 1729..2925 | 29..1225 | 5985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13969909..13970206 | 761..464 | 1490 | 100 | Minus |
3R | 32079331 | 3R | 13969608..13969790 | 940..758 | 915 | 100 | Minus |
3R | 32079331 | 3R | 13970278..13970440 | 465..303 | 815 | 100 | Minus |
3R | 32079331 | 3R | 13970950..13971105 | 183..28 | 780 | 100 | Minus |
3R | 32079331 | 3R | 13969397..13969541 | 1083..939 | 725 | 100 | Minus |
3R | 32079331 | 3R | 13969189..13969330 | 1225..1084 | 710 | 100 | Minus |
3R | 32079331 | 3R | 13970505..13970634 | 306..177 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader1 | 4032 | invader1 INVADER 4032bp | 2149..2196 | 1098..1145 | 132 | 75 | Plus |
BO16463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:38 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RD | 1..1212 | 17..1228 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:14 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RD | 340..1562 | 8..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:44 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 360..1568 | 17..1227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:38 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RD | 340..1562 | 8..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:04 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdx-RC | 360..1568 | 17..1227 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:04 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13969186..13969330 | 1084..1227 | 98 | <- | Minus |
3R | 13969397..13969539 | 941..1083 | 100 | <- | Minus |
3R | 13969608..13969786 | 762..940 | 100 | <- | Minus |
3R | 13969909..13970204 | 466..761 | 100 | <- | Minus |
3R | 13970278..13970439 | 304..465 | 100 | <- | Minus |
3R | 13970508..13970629 | 182..303 | 100 | <- | Minus |
3R | 13970952..13971113 | 17..181 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:44 Download gff for
BO16463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9794908..9795052 | 1084..1227 | 98 | <- | Minus |
arm_3R | 9795119..9795261 | 941..1083 | 100 | <- | Minus |
arm_3R | 9795330..9795508 | 762..940 | 100 | <- | Minus |
arm_3R | 9795631..9795926 | 466..761 | 100 | <- | Minus |
arm_3R | 9796000..9796161 | 304..465 | 100 | <- | Minus |
arm_3R | 9796230..9796351 | 182..303 | 100 | <- | Minus |
arm_3R | 9796674..9796835 | 17..181 | 96 | | Minus |
BO16463.pep Sequence
Translation from 16 to 1243
> BO16463.pep
MALARLPVNECQASQTARVTSNLHASSSTMAVSRVPSPPLPEVNTPVAEN
WCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRV
NPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQR
AYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNIS
GQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAAR
SDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMAD
DLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQT
IDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRV
KMSASFLDH
BO16463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdx-PC | 403 | CG12537-PC | 1..403 | 1..403 | 2064 | 100 | Plus |
rdx-PF | 406 | CG12537-PF | 8..406 | 5..403 | 2047 | 100 | Plus |
rdx-PA | 406 | CG12537-PA | 8..406 | 5..403 | 2047 | 100 | Plus |
rdx-PE | 829 | CG12537-PE | 431..829 | 5..403 | 2047 | 100 | Plus |
rdx-PB | 374 | CG12537-PB | 1..374 | 30..403 | 1923 | 100 | Plus |