Clone BO16463 Report

Search the DGRC for BO16463

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptrdx-RC
Protein status:BO16463.pep: validated full length
Sequenced Size:1243

Clone Sequence Records

BO16463.3prime Sequence

665 bp (664 high quality bases) assembled on 2006-10-13

> BO16463.3prime
ATGGTCTAGAAAGCTTGCGCTCATTTTCACGCGTTTCCTTGGTGGTCCAA
TTGGTGGGATTTGTTGTGTTGCGAGCGCACGAAATGCCTCCGCTATCAAA
TGTGAATGTGTTGTGATCATATTTTGCCAGCCGGAGGTTTCCATCACATC
GGTGGCATGAGTATTTATGAAATCTATCGTTTGTGCTTTCAATTGATCCG
CACTGTGGAGATCAGCTAATATTAGGGTTTCGGCTGCTGTTTCTACAGAG
AGATTGACGCACAGCGCCTCCTCGCACATCACTTTCAGCTTTTCGAGTGC
ATACTTATCAGCAGCCGCTAGGAGATCATCAGCCATTTTTTCTAGATTGG
GCGCCTTGCCCGTGTATATGAATCGCAGCATTTCTTTAAGAACCTCATGA
TCCACATCGGTTATGGCGACACGATTCAACTTTCGCTCCTCCATCTCATG
CTCGAACATGGCCGCAAAGACATCGCTGCGCGCTGCCAATATGGCCTTGT
GCGCCTGGAACTCTCGACCGCCCACGGAGAGCGTGACGTCGCTGAACTTC
TCGTTGTCAAATAGATTGCCAAGATCCTCGGACAGCTTGCATTCGGGCAC
TTTGAACTGCACGATATTGGATTGTCCGGAGATGTTCACGCTGTCCGCCA
CGACGCTGACCTCGC

BO16463.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 563..1209 665..19 3235 100 Minus
CG9924-PE 2490 CG9924-RE 1841..2487 665..19 3235 100 Minus
CG9924-PA 1221 CG9924-RA 572..1218 665..19 3235 100 Minus
CG9924-PB 1125 CG9924-RB 476..1122 665..19 3235 100 Minus
CG9924-PD 1212 CG9924-RD 563..1209 665..19 3235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RF 3856 CG12537-RF 1082..1728 665..19 3235 100 Minus
rdx-RE 4159 CG12537-RE 2279..2925 665..19 3235 100 Minus
rdx-RB 2311 CG12537-RB 1101..1747 665..19 3235 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969608..13969790 304..486 915 100 Plus
3R 32079331 3R 13969909..13970091 483..665 915 100 Plus
3R 32079331 3R 13969397..13969541 161..305 725 100 Plus
3R 32079331 3R 13969189..13969330 19..160 710 100 Plus
Blast to na_te.dros performed 2015-02-10 20:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 146..99 132 75 Minus

BO16463.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:52 Download gff for BO16463.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 563..1212 16..665 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:02 Download gff for BO16463.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 1101..1751 15..665 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:51 Download gff for BO16463.3prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RB 1101..1751 15..665 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:51 Download gff for BO16463.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13969397..13969539 161..303 100 <- Plus
3R 13969608..13969786 304..482 100 <- Plus
3R 13969909..13970091 483..665 100   Plus
3R 13969184..13969330 15..160 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:02 Download gff for BO16463.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9795119..9795261 161..303 100 <- Plus
arm_3R 9794906..9795052 15..160 98 <- Plus
arm_3R 9795330..9795508 304..482 100 <- Plus
arm_3R 9795631..9795813 483..665 100   Plus

BO16463.5prime Sequence

673 bp (638 high quality bases) assembled on 2006-10-13

> BO16463.5prime
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAAGATCTT

BO16463.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9924-PC 1212 CG9924-RC 1..657 17..673 3260 99.8 Plus
CG9924-PD 1212 CG9924-RD 1..657 17..673 3260 99.8 Plus
CG9924-PE 2490 CG9924-RE 1291..1935 29..673 3200 99.8 Plus
CG9924-PA 1221 CG9924-RA 22..666 29..673 3200 99.8 Plus
CG9924-PB 1125 CG9924-RB 1..570 104..673 2825 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RC 2802 CG12537-RC 360..1016 17..673 3270 99.8 Plus
rdx-RF 3856 CG12537-RF 532..1176 29..673 3210 99.8 Plus
rdx-RE 4159 CG12537-RE 1729..2373 29..673 3210 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969997..13970206 673..464 1035 99.5 Minus
3R 32079331 3R 13970278..13970440 465..303 815 100 Minus
3R 32079331 3R 13970950..13971105 183..28 780 100 Minus
3R 32079331 3R 13970505..13970634 306..177 650 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:38:15 has no hits.

BO16463.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:53 Download gff for BO16463.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9924-PD 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:24 Download gff for BO16463.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 350..1016 8..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:32 Download gff for BO16463.5prime
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 350..1016 8..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:32 Download gff for BO16463.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13969997..13970204 466..673 99 <- Minus
3R 13970278..13970439 304..465 100 <- Minus
3R 13970508..13970629 182..303 100 <- Minus
3R 13970952..13971113 17..181 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:24 Download gff for BO16463.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9796674..9796835 17..181 96   Minus
arm_3R 9795719..9795926 466..673 99 <- Minus
arm_3R 9796000..9796161 304..465 100 <- Minus
arm_3R 9796230..9796351 182..303 100 <- Minus

BO16463.complete Sequence

1243 bp assembled on 2006-10-11

GenBank Submission: FJ633841

> BO16463.complete
GAAGTTATCAGTCGACATGGCTCTAGCCAGATTGCCGGTGAACGAATGTC
AGGCAAGCCAAACAGCTAGAGTCACCTCGAACCTGCACGCATCCAGTAGC
ACGATGGCGGTCAGCCGTGTACCATCGCCGCCCTTGCCGGAAGTTAATAC
GCCAGTTGCCGAGAACTGGTGCTACACGCAGGTCAAAGTGGTTAAATTTA
GTTATATGTGGACCATAAATAACTTTAGTTTTTGTCGGGAAGAAATGGGT
GAGGTACTCAAATCGTCCACATTCTCAGCCGGTGCTAATGACAAACTAAA
ATGGTGTTTACGGGTTAACCCCAAGGGTCTCGACGAGGAGAGCAAGGATT
ACCTTTCTTTATATTTACTGTTAGTTTCGTGTAATAAATCAGAAGTCAGA
GCCAAGTTCAAATTTTCCATACTGAATGCGAAGCGTGAGGAAACCAAAGC
AATGGAATCCCAAAGAGCTTATCGTTTTGTGCAGGGCAAAGATTGGGGCT
TCAAGAAGTTCATCCGACGAGACTTCCTGCTGGACGAGGCCAACGGCCTG
CTGCCGGAGGATAAGCTGACCATCTTCTGCGAGGTCAGCGTCGTGGCGGA
CAGCGTGAACATCTCCGGACAATCCAATATCGTGCAGTTCAAAGTGCCCG
AATGCAAGCTGTCCGAGGATCTTGGCAATCTATTTGACAACGAGAAGTTC
AGCGACGTCACGCTCTCCGTGGGCGGTCGAGAGTTCCAGGCGCACAAGGC
CATATTGGCAGCGCGCAGCGATGTCTTTGCGGCCATGTTCGAGCATGAGA
TGGAGGAGCGAAAGTTGAATCGTGTCGCCATAACCGATGTGGATCATGAG
GTTCTTAAAGAAATGCTGCGATTCATATACACGGGCAAGGCGCCCAATCT
AGAAAAAATGGCTGATGATCTCCTAGCGGCTGCTGATAAGTATGCACTCG
AAAAGCTGAAAGTGATGTGCGAGGAGGCGCTGTGCGTCAATCTCTCTGTA
GAAACAGCAGCCGAAACCCTAATATTAGCTGATCTCCACAGTGCGGATCA
ATTGAAAGCACAAACGATAGATTTCATAAATACTCATGCCACCGATGTGA
TGGAAACCTCCGGCTGGCAAAATATGATCACAACACATTCACATTTGATA
GCGGAGGCATTTCGTGCGCTCGCAACACAACAAATCCCACCAATTGGACC
ACCAAGGAAACGCGTGAAAATGAGCGCAAGCTTTCTAGACCAT

BO16463.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RC 1212 CG12537-PC 1..1209 17..1225 6045 100 Plus
rdx-RF 1221 CG12537-PF 22..1218 29..1225 5985 100 Plus
rdx-RE 2490 CG12537-PE 1291..2487 29..1225 5985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-RC 2802 CG12537-RC 360..1568 17..1225 6045 100 Plus
rdx-RF 3856 CG12537-RF 532..1728 29..1225 5985 100 Plus
rdx-RE 4159 CG12537-RE 1729..2925 29..1225 5985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13969909..13970206 761..464 1490 100 Minus
3R 32079331 3R 13969608..13969790 940..758 915 100 Minus
3R 32079331 3R 13970278..13970440 465..303 815 100 Minus
3R 32079331 3R 13970950..13971105 183..28 780 100 Minus
3R 32079331 3R 13969397..13969541 1083..939 725 100 Minus
3R 32079331 3R 13969189..13969330 1225..1084 710 100 Minus
3R 32079331 3R 13970505..13970634 306..177 650 100 Minus
Blast to na_te.dros performed 2014-11-27 19:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
invader1 4032 invader1 INVADER 4032bp 2149..2196 1098..1145 132 75 Plus

BO16463.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:38 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RD 1..1212 17..1228 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:14 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RD 340..1562 8..1229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:44 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 360..1568 17..1227 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:38 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RD 340..1562 8..1229 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:04 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
rdx-RC 360..1568 17..1227 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:04 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13969186..13969330 1084..1227 98 <- Minus
3R 13969397..13969539 941..1083 100 <- Minus
3R 13969608..13969786 762..940 100 <- Minus
3R 13969909..13970204 466..761 100 <- Minus
3R 13970278..13970439 304..465 100 <- Minus
3R 13970508..13970629 182..303 100 <- Minus
3R 13970952..13971113 17..181 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:44 Download gff for BO16463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9794908..9795052 1084..1227 98 <- Minus
arm_3R 9795119..9795261 941..1083 100 <- Minus
arm_3R 9795330..9795508 762..940 100 <- Minus
arm_3R 9795631..9795926 466..761 100 <- Minus
arm_3R 9796000..9796161 304..465 100 <- Minus
arm_3R 9796230..9796351 182..303 100 <- Minus
arm_3R 9796674..9796835 17..181 96   Minus

BO16463.pep Sequence

Translation from 16 to 1243

> BO16463.pep
MALARLPVNECQASQTARVTSNLHASSSTMAVSRVPSPPLPEVNTPVAEN
WCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRV
NPKGLDEESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQR
AYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNIS
GQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAAR
SDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKAPNLEKMAD
DLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQT
IDFINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRV
KMSASFLDH

BO16463.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
rdx-PC 403 CG12537-PC 1..403 1..403 2064 100 Plus
rdx-PF 406 CG12537-PF 8..406 5..403 2047 100 Plus
rdx-PA 406 CG12537-PA 8..406 5..403 2047 100 Plus
rdx-PE 829 CG12537-PE 431..829 5..403 2047 100 Plus
rdx-PB 374 CG12537-PB 1..374 30..403 1923 100 Plus