Clone Sequence Records
BO16465.3prime Sequence
767 bp (673 high quality bases) assembled on 2006-10-13
> BO16465.3prime
ATGGTCTAGAAAGCTTGCGGCGCAGTCCCGCGACTGATAGAACAGTATGT
AGCCGGTCTCCGAAGACTTGTGTATGTCCGAGGTCAGACCATAGAAGTCC
TCGATTGTGGAAGCCTCGATTTTGTCCACCATATCATCGTCGAATAGTAG
CCACAGTCCGTGACTCTTCACAATGGATATATAATGGCCACGATTTGGTC
CGGAACCGCAGTGGATAACCACAGCGGTCAGATCGTAGAGACGATCAGGA
TTCACTGCATCATCGGAGGTGTTAAAGAGCCTCAGTTCCAGTGGAAACAC
AACGCGATGCGAGACCTTGATGTGCCTATTAAACTGCTCCATGTACTTGA
AGCGCTTGAGATGCAGGGCCAGGATCATGGGCAACTTCTTTACACGCATC
CTCTTCTGCGCCTCCTGATAACTGCAGCAATTGTCGCACTTGAACTTGTT
GTCCGAGCACAGGGTCTCCGTGTTGCTGAAGCACCGCAGGCAGTGCGTAA
TCGAGGTGTTCTGGTCCACGTCCACCTGGAGATCGAAGAAATTCTCGTCC
TTGCTGCTCACCGTCTCGCAGTTGAGGCACCTGGTCTCGGACGTAAGTAT
GCCCTGAAAGATCTCGTGCACCCAGGTGGGCTCCGAGTTGGCCCCATTGG
TTCCCGTTCCGTTTCCTGAGATTATAGGTGTTGTGGTGGCCGTAAGACTG
CCACTGGCATCCAGCACACTTGTGTTGGCATTCAGTGATCCCGTCGAATT
GCTACTGGTGCCATTTG
BO16465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7023-PB | 1275 | CG7023-RB | 524..1272 | 767..19 | 3720 | 99.8 | Minus |
CG7023-PA | 1095 | CG7023-RA | 446..1092 | 665..19 | 3235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usp12-46-RB | 2208 | CG7023-RB | 1311..2059 | 767..19 | 3730 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22775477..22776225 | 767..19 | 3730 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:45:23 has no hits.
BO16465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:54 Download gff for
BO16465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7023-PB | 524..1275 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:32 Download gff for
BO16465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usp12-46-RB | 1320..2071 | 15..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:08 Download gff for
BO16465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usp12-46-RB | 1311..2062 | 15..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:08 Download gff for
BO16465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22775477..22776228 | 15..767 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:32 Download gff for
BO16465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18601199..18601950 | 15..767 | 99 | | Minus |
BO16465.5prime Sequence
701 bp (638 high quality bases) assembled on 2006-10-13
> BO16465.5prime
GAAGTTATCAGTCGACATGGGTGCCAATGTGTCGCAGCTGGAGCGGGAGA
TTGGCTCCGATCTGTTCCCACCGAATGAGCACTACTTCGGTCTGGTGAAC
TTTGGGAACACCTGCTACAGCAACTCGGTGCTGCAGGCCCTCTACTTTTG
CAAGCCATTCCGCGAGAAGGTCCTTGAGTACAAGGCCAAGAACAAGAGGC
CCAAGGAGACGCTGCTGTCGTGTCTGGCGGATCTGTTCTACAGCATTGCC
ACGCAGAAGAAGAAGGTGGGCTCGATTGCGCCCAAAAAGTTCATAACCAG
GCTGCGAAAGGAGAAGGAGGAGTTCGATAACTATATGCAGCAGGATGCCC
ACGAGTTCCTCAACTTTCTGATCAATCACATCAATGAGATCATACTGGCC
GAACGGAATGCAGGGCCCAGCAATGGGAATCCCAAGGCCACCAATCAAGG
CGGAAGCACAAGTGCCATGGCCAGCAGCATAGCTAGCAAGTCCAGCTCAA
CGTCCAACTCGAATTCCAACTCCAATTCGACAACAAACTCAAATGGCAAC
AGTAGCAATTCGACGGGATCACTGAATGCCAACACAAGTGTGCTGGATGC
CAGTGGCAGTCTTACGGCCACCACAACACCTATAATCTCAGGAAACGGAA
CGGGAACCAATGGGGCCAACTCGGAGCCCACCTGGGTGCACGAGATCTTT
C
BO16465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7023-PB | 1275 | CG7023-RB | 1..685 | 17..701 | 3425 | 100 | Plus |
CG7023-PA | 1095 | CG7023-RA | 1..446 | 17..462 | 2230 | 100 | Plus |
CG7023-PA | 1095 | CG7023-RA | 446..505 | 642..701 | 300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usp12-46-RB | 2208 | CG7023-RB | 787..1472 | 16..701 | 3430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22774953..22775638 | 16..701 | 3430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:06:06 has no hits.
BO16465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:55 Download gff for
BO16465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7023-PB | 1..685 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:43 Download gff for
BO16465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usp12-46-RB | 793..1481 | 13..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:00 Download gff for
BO16465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usp12-46-RB | 784..1472 | 13..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:00 Download gff for
BO16465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22774950..22775638 | 13..701 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:43 Download gff for
BO16465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18600672..18601360 | 13..701 | 99 | | Plus |
BO16465.complete Sequence
1306 bp assembled on 2006-10-11
GenBank Submission: FJ633842
> BO16465.complete
GAAGTTATCAGTCGACATGGGTGCCAATGTGTCGCAGCTGGAGCGGGAGA
TTGGCTCCGATCTGTTCCCACCGAATGAGCACTACTTCGGTCTGGTGAAC
TTTGGGAACACCTGCTACAGCAACTCGGTGCTGCAGGCCCTCTACTTTTG
CAAGCCATTCCGCGAGAAGGTCCTTGAGTACAAGGCCAAGAACAAGAGGC
CCAAGGAGACGCTGCTGTCGTGTCTGGCGGATCTGTTCTACAGCATTGCC
ACGCAGAAGAAGAAGGTGGGCTCGATTGCGCCCAAAAAGTTCATAACCAG
GCTGCGAAAGGAGAAGGAGGAGTTCGATAACTATATGCAGCAGGATGCCC
ACGAGTTCCTCAACTTTCTGATCAATCACATCAATGAGATCATACTGGCC
GAACGGAATGCAGGGCCCAGCAATGGGAATCCCAAGGCCACCAATCAAGG
CGGAAGCACAAGTGCCATGGCCAGCAGCATAGCTAGCAAGTCCAGCTCAA
CGTCCAACTCGAATTCCAACTCCAATTCGACAACAAACTCAAATGGCAAC
AGTAGCAATTCGACGGGATCACTGAATGCCAACACAAGTGTGCTGGATGC
CAGTGGCAGTCTTACGGCCACCACAACACCTATAATCTCAGGAAACGGAA
CGGGAACCAATGGGGCCAACTCGGAGCCCACCTGGGTGCACGAGATCTTT
CAGGGCATACTTACGTCCGAGACCAGGTGCCTCAACTGCGAGACGGTGAG
CAGCAAGGACGAGAATTTCTTCGATCTCCAGGTGGACGTGGACCAGAACA
CCTCGATTACGCACTGCCTGCGGTGCTTCAGCAACACGGAGACCCTGTGC
TCGGACAACAAGTTCAAGTGCGACAATTGCTGCAGTTATCAGGAGGCGCA
GAAGAGGATGCGTGTAAAGAAGTTGCCCATGATCCTGGCCCTGCATCTCA
AGCGCTTCAAGTACATGGAGCAGTTTAATAGGCACATCAAGGTCTCGCAT
CGCGTTGTGTTTCCACTGGAACTGAGGCTCTTTAACACCTCCGATGATGC
AGTGAATCCTGATCGTCTCTACGATCTGACCGCTGTGGTTATCCACTGCG
GTTCCGGACCAAATCGTGGCCATTATATATCCATTGTGAAGAGTCACGGA
CTGTGGCTACTATTCGACGATGATATGGTGGACAAAATCGAGGCTTCCAC
AATCGAGGACTTCTATGGTCTGACCTCGGACATACACAAGTCTTCGGAGA
CCGGCTACATACTGTTCTATCAGTCGCGGGACTGCGCCGCAAGCTTTCTA
GACCAT
BO16465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usp12-46-RB | 1275 | CG7023-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usp12-46-RB | 2208 | CG7023-RB | 787..2059 | 16..1288 | 6365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22774953..22776225 | 16..1288 | 6365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:19:09 has no hits.
BO16465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:08 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7023-RB | 1..1275 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:49 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7023-RB | 793..2071 | 13..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:18 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usp12-46-RB | 797..2068 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:08 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7023-RB | 793..2071 | 13..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:47 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Usp12-46-RB | 788..2059 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:47 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22774954..22776225 | 17..1290 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:18 Download gff for
BO16465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18600676..18601947 | 17..1290 | 99 | | Plus |
BO16465.pep Sequence
Translation from 16 to 1306
> BO16465.pep
MGANVSQLEREIGSDLFPPNEHYFGLVNFGNTCYSNSVLQALYFCKPFRE
KVLEYKAKNKRPKETLLSCLADLFYSIATQKKKVGSIAPKKFITRLRKEK
EEFDNYMQQDAHEFLNFLINHINEIILAERNAGPSNGNPKATNQGGSTSA
MASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGSLNANTSVLDASGSLT
ATTTPIISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDEN
FFDLQVDVDQNTSITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQKRMRV
KKLPMILALHLKRFKYMEQFNRHIKVSHRVVFPLELRLFNTSDDAVNPDR
LYDLTAVVIHCGSGPNRGHYISIVKSHGLWLLFDDDMVDKIEASTIEDFY
GLTSDIHKSSETGYILFYQSRDCAASFLDH
BO16465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Usp12-46-PB | 424 | CG7023-PB | 1..424 | 1..424 | 2227 | 100 | Plus |
DUBAI-PA | 852 | CG8830-PA | 359..739 | 25..419 | 332 | 26.7 | Plus |
DUBAI-PB | 852 | CG8830-PB | 359..739 | 25..419 | 332 | 26.7 | Plus |
not-PC | 496 | CG4166-PC | 274..491 | 208..409 | 254 | 30.3 | Plus |
not-PB | 496 | CG4166-PB | 274..491 | 208..409 | 254 | 30.3 | Plus |