Clone BO16465 Report

Search the DGRC for BO16465

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG7023-RB
Protein status:BO16465.pep: validated full length
Sequenced Size:1306

Clone Sequence Records

BO16465.3prime Sequence

767 bp (673 high quality bases) assembled on 2006-10-13

> BO16465.3prime
ATGGTCTAGAAAGCTTGCGGCGCAGTCCCGCGACTGATAGAACAGTATGT
AGCCGGTCTCCGAAGACTTGTGTATGTCCGAGGTCAGACCATAGAAGTCC
TCGATTGTGGAAGCCTCGATTTTGTCCACCATATCATCGTCGAATAGTAG
CCACAGTCCGTGACTCTTCACAATGGATATATAATGGCCACGATTTGGTC
CGGAACCGCAGTGGATAACCACAGCGGTCAGATCGTAGAGACGATCAGGA
TTCACTGCATCATCGGAGGTGTTAAAGAGCCTCAGTTCCAGTGGAAACAC
AACGCGATGCGAGACCTTGATGTGCCTATTAAACTGCTCCATGTACTTGA
AGCGCTTGAGATGCAGGGCCAGGATCATGGGCAACTTCTTTACACGCATC
CTCTTCTGCGCCTCCTGATAACTGCAGCAATTGTCGCACTTGAACTTGTT
GTCCGAGCACAGGGTCTCCGTGTTGCTGAAGCACCGCAGGCAGTGCGTAA
TCGAGGTGTTCTGGTCCACGTCCACCTGGAGATCGAAGAAATTCTCGTCC
TTGCTGCTCACCGTCTCGCAGTTGAGGCACCTGGTCTCGGACGTAAGTAT
GCCCTGAAAGATCTCGTGCACCCAGGTGGGCTCCGAGTTGGCCCCATTGG
TTCCCGTTCCGTTTCCTGAGATTATAGGTGTTGTGGTGGCCGTAAGACTG
CCACTGGCATCCAGCACACTTGTGTTGGCATTCAGTGATCCCGTCGAATT
GCTACTGGTGCCATTTG

BO16465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7023-PB 1275 CG7023-RB 524..1272 767..19 3720 99.8 Minus
CG7023-PA 1095 CG7023-RA 446..1092 665..19 3235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Usp12-46-RB 2208 CG7023-RB 1311..2059 767..19 3730 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22775477..22776225 767..19 3730 99.9 Minus
Blast to na_te.dros performed on 2015-02-02 17:45:23 has no hits.

BO16465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:54 Download gff for BO16465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7023-PB 524..1275 15..767 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:32 Download gff for BO16465.3prime
Subject Subject Range Query Range Percent Splice Strand
Usp12-46-RB 1320..2071 15..767 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:08 Download gff for BO16465.3prime
Subject Subject Range Query Range Percent Splice Strand
Usp12-46-RB 1311..2062 15..767 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:08 Download gff for BO16465.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22775477..22776228 15..767 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:32 Download gff for BO16465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18601199..18601950 15..767 99   Minus

BO16465.5prime Sequence

701 bp (638 high quality bases) assembled on 2006-10-13

> BO16465.5prime
GAAGTTATCAGTCGACATGGGTGCCAATGTGTCGCAGCTGGAGCGGGAGA
TTGGCTCCGATCTGTTCCCACCGAATGAGCACTACTTCGGTCTGGTGAAC
TTTGGGAACACCTGCTACAGCAACTCGGTGCTGCAGGCCCTCTACTTTTG
CAAGCCATTCCGCGAGAAGGTCCTTGAGTACAAGGCCAAGAACAAGAGGC
CCAAGGAGACGCTGCTGTCGTGTCTGGCGGATCTGTTCTACAGCATTGCC
ACGCAGAAGAAGAAGGTGGGCTCGATTGCGCCCAAAAAGTTCATAACCAG
GCTGCGAAAGGAGAAGGAGGAGTTCGATAACTATATGCAGCAGGATGCCC
ACGAGTTCCTCAACTTTCTGATCAATCACATCAATGAGATCATACTGGCC
GAACGGAATGCAGGGCCCAGCAATGGGAATCCCAAGGCCACCAATCAAGG
CGGAAGCACAAGTGCCATGGCCAGCAGCATAGCTAGCAAGTCCAGCTCAA
CGTCCAACTCGAATTCCAACTCCAATTCGACAACAAACTCAAATGGCAAC
AGTAGCAATTCGACGGGATCACTGAATGCCAACACAAGTGTGCTGGATGC
CAGTGGCAGTCTTACGGCCACCACAACACCTATAATCTCAGGAAACGGAA
CGGGAACCAATGGGGCCAACTCGGAGCCCACCTGGGTGCACGAGATCTTT
C

BO16465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7023-PB 1275 CG7023-RB 1..685 17..701 3425 100 Plus
CG7023-PA 1095 CG7023-RA 1..446 17..462 2230 100 Plus
CG7023-PA 1095 CG7023-RA 446..505 642..701 300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Usp12-46-RB 2208 CG7023-RB 787..1472 16..701 3430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22774953..22775638 16..701 3430 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:06:06 has no hits.

BO16465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:55 Download gff for BO16465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7023-PB 1..685 17..701 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:43 Download gff for BO16465.5prime
Subject Subject Range Query Range Percent Splice Strand
Usp12-46-RB 793..1481 13..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:00 Download gff for BO16465.5prime
Subject Subject Range Query Range Percent Splice Strand
Usp12-46-RB 784..1472 13..701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:00 Download gff for BO16465.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22774950..22775638 13..701 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:43 Download gff for BO16465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18600672..18601360 13..701 99   Plus

BO16465.complete Sequence

1306 bp assembled on 2006-10-11

GenBank Submission: FJ633842

> BO16465.complete
GAAGTTATCAGTCGACATGGGTGCCAATGTGTCGCAGCTGGAGCGGGAGA
TTGGCTCCGATCTGTTCCCACCGAATGAGCACTACTTCGGTCTGGTGAAC
TTTGGGAACACCTGCTACAGCAACTCGGTGCTGCAGGCCCTCTACTTTTG
CAAGCCATTCCGCGAGAAGGTCCTTGAGTACAAGGCCAAGAACAAGAGGC
CCAAGGAGACGCTGCTGTCGTGTCTGGCGGATCTGTTCTACAGCATTGCC
ACGCAGAAGAAGAAGGTGGGCTCGATTGCGCCCAAAAAGTTCATAACCAG
GCTGCGAAAGGAGAAGGAGGAGTTCGATAACTATATGCAGCAGGATGCCC
ACGAGTTCCTCAACTTTCTGATCAATCACATCAATGAGATCATACTGGCC
GAACGGAATGCAGGGCCCAGCAATGGGAATCCCAAGGCCACCAATCAAGG
CGGAAGCACAAGTGCCATGGCCAGCAGCATAGCTAGCAAGTCCAGCTCAA
CGTCCAACTCGAATTCCAACTCCAATTCGACAACAAACTCAAATGGCAAC
AGTAGCAATTCGACGGGATCACTGAATGCCAACACAAGTGTGCTGGATGC
CAGTGGCAGTCTTACGGCCACCACAACACCTATAATCTCAGGAAACGGAA
CGGGAACCAATGGGGCCAACTCGGAGCCCACCTGGGTGCACGAGATCTTT
CAGGGCATACTTACGTCCGAGACCAGGTGCCTCAACTGCGAGACGGTGAG
CAGCAAGGACGAGAATTTCTTCGATCTCCAGGTGGACGTGGACCAGAACA
CCTCGATTACGCACTGCCTGCGGTGCTTCAGCAACACGGAGACCCTGTGC
TCGGACAACAAGTTCAAGTGCGACAATTGCTGCAGTTATCAGGAGGCGCA
GAAGAGGATGCGTGTAAAGAAGTTGCCCATGATCCTGGCCCTGCATCTCA
AGCGCTTCAAGTACATGGAGCAGTTTAATAGGCACATCAAGGTCTCGCAT
CGCGTTGTGTTTCCACTGGAACTGAGGCTCTTTAACACCTCCGATGATGC
AGTGAATCCTGATCGTCTCTACGATCTGACCGCTGTGGTTATCCACTGCG
GTTCCGGACCAAATCGTGGCCATTATATATCCATTGTGAAGAGTCACGGA
CTGTGGCTACTATTCGACGATGATATGGTGGACAAAATCGAGGCTTCCAC
AATCGAGGACTTCTATGGTCTGACCTCGGACATACACAAGTCTTCGGAGA
CCGGCTACATACTGTTCTATCAGTCGCGGGACTGCGCCGCAAGCTTTCTA
GACCAT

BO16465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
Usp12-46-RB 1275 CG7023-PB 1..1272 17..1288 6360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
Usp12-46-RB 2208 CG7023-RB 787..2059 16..1288 6365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22774953..22776225 16..1288 6365 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:19:09 has no hits.

BO16465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:08 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7023-RB 1..1275 17..1292 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:49 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7023-RB 793..2071 13..1292 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:18 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
Usp12-46-RB 797..2068 17..1290 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:08 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
CG7023-RB 793..2071 13..1292 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:47 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
Usp12-46-RB 788..2059 17..1290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:47 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22774954..22776225 17..1290 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:18 Download gff for BO16465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18600676..18601947 17..1290 99   Plus

BO16465.pep Sequence

Translation from 16 to 1306

> BO16465.pep
MGANVSQLEREIGSDLFPPNEHYFGLVNFGNTCYSNSVLQALYFCKPFRE
KVLEYKAKNKRPKETLLSCLADLFYSIATQKKKVGSIAPKKFITRLRKEK
EEFDNYMQQDAHEFLNFLINHINEIILAERNAGPSNGNPKATNQGGSTSA
MASSIASKSSSTSNSNSNSNSTTNSNGNSSNSTGSLNANTSVLDASGSLT
ATTTPIISGNGTGTNGANSEPTWVHEIFQGILTSETRCLNCETVSSKDEN
FFDLQVDVDQNTSITHCLRCFSNTETLCSDNKFKCDNCCSYQEAQKRMRV
KKLPMILALHLKRFKYMEQFNRHIKVSHRVVFPLELRLFNTSDDAVNPDR
LYDLTAVVIHCGSGPNRGHYISIVKSHGLWLLFDDDMVDKIEASTIEDFY
GLTSDIHKSSETGYILFYQSRDCAASFLDH

BO16465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
Usp12-46-PB 424 CG7023-PB 1..424 1..424 2227 100 Plus
DUBAI-PA 852 CG8830-PA 359..739 25..419 332 26.7 Plus
DUBAI-PB 852 CG8830-PB 359..739 25..419 332 26.7 Plus
not-PC 496 CG4166-PC 274..491 208..409 254 30.3 Plus
not-PB 496 CG4166-PB 274..491 208..409 254 30.3 Plus