Clone Sequence Records
BO16466.complete Sequence
1981 bp assembled on 2010-04-13
GenBank Submission: KX795058
> BO16466.complete
GAAGTTATCAGTCGACATGGCCCTAACTAATCGGGATCGGGAACGGGGCT
CTGGTCCATTGCCCAATCGCTGGCTATACTGTCCGCGCAAGAGCGATACC
ATCATTGCGGAACGCTTCCTGGCCTTTAAGACCCCGCTGAGCAATAACTT
TCACGACAAGATGCCCATCGAGTGCACCTTTCAACCCGAGATGCTCTTCG
AATACTGCAAAACGCTAAAGGTGAAACTGGGCCTCTGGGTTGACCTGACC
AATACGAAACGATTCTACGATCGATCCGCAGTGGAGGAGCTCGGCGCGAA
ATATATTAAGCTGCAGTGCCGTGGACATGGCGAGACGCCATCGCCGGAGC
AGACGCACAGTTTCATCGAGATCGTGGACAACTTTATTAACGAACGTCCA
TTTGACGTTATAGCCGTGCACTGCACGCACGGTTTCAATCGCACTGGCTT
CCTGATTGTCTGCTATTTGGTCGAGCGACTCGATTGCTCCGTTTCGGCAG
CGCTCGCTATCTTTGCCAGCGCCCGGCCGCCGGGCATCTACAAGCAGGAT
TACATCAACGAGCTGTACAAACGCTACGAGGACACGAATGCCGCTCCAGC
GGCACCAGAACAGCCCAATTGGTGCCTGGACTATGATGATGGCAACGGCG
ATGGTTTTGTGCAGGACAACTCCTCATCCACGTCACAGCAGGCCGGCGAG
CAGGATGACGACGCCGAGGAGGTGGAGGGAGAGGATGCGGGCGGCGACTG
TGACGCCTCCACGTCGGACGGTCAGCCGCGTAAGAAGCGACGGCGCGAAA
TGATCATCAAGAATGCCACCTTTATGGCGGGAGTGCCGGGCGTGCGACAG
GTGAGCGATCAGCCGCGACTGGGCGATCTGCAGCGTAAGGTGCAGGACTG
GTGCGACTGGAAGAAGAACGGCTTCCCTGGCGCACAGCCCGTCTCCATGG
ACAGGGAGAACATAAAGCGGCTAAGCGAGATACCGTATCGTGTGTCGTGG
AAGGCGGACGGTACACGTTATATGATGCTCATCGATGGAAGGGACGAGGT
ATATTTCTTCGATCGCAATCACTCCTGTTTCCAGGTGGAGAATGTGACAT
TTGTGGAGAGCAGGAACCTAAACGAGCATCTCGACGGCACTCTCGTCGAC
GGGGAGATGGTGCTGGACAAGATCGGCGAGACCGTAACGCCGCGCTACCT
CATCTACGACATTGTGCGATTATCGAATCGCGATGTGCGGGACGAGCCAT
TCTATCCAAATCGACTGGACTACATTAAGACGGAAGTTATAGGTCCCCGA
ATCCTGGGCATGAAGCATGGCATCATCAATCAGCGGCTGCAGGCGTTCAG
TGTGCGCGGCAAGGACTTCTGGGACATTTGGATGTCTGCCCGGCTGCTGG
GTGAGAAATTCTCGCGGACACTGGCACACGAACCGGATGGCCTCATCTTC
CAGCCATCAAAGCAGCCCTACACGGCTGGCACATGCTCCGATGTCTTCAA
ATGGAAGCCACATGAGCTCAACTCGGTGGACTTTCGGCTGAAGATCATAA
CAGAGCGCGGCGAGGGCTTGCTGACGAAAAAGGTGGGCTTCCTCTATGTC
GGCGGACACGATGCACCCTATGGACGGATGCAAAGGTTAACGAAGGAGAC
CAGAGAATTGGACAACAGAATCGTTGAGTGCACCATGAATCAGTTTGGCA
ACTGGGACTTTATGCGCGAGCGAACGGACAAAAAGAATCCCAACAGTTAT
AATACAGCCCGCTCCGTTGTGGACAGCATAAAGCATCCAGTCACCAAGGA
GTACCTACTAAACTTTATCGCAAGCTCTGGCTATCGGAATGATCATGTCA
TGATGCCGCCGCCGATCAATTCCCATAACCAAAACCACAACCATAACCAC
TTTTATCCCCATGGTCATGGCCAACACCAGCGTCGTCCCTGCGTGAACCC
GACATTAGGAAATGCAAGCTTTCTAGACCAT
BO16466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRNA-cap-RA | 1950 | CG1810-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:55:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRNA-cap-RA | 2243 | CG1810-RA | 242..2188 | 17..1963 | 9735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14241380..14242315 | 1154..219 | 4680 | 100 | Minus |
| X | 23542271 | X | 14240852..14241127 | 1566..1291 | 1380 | 100 | Minus |
| X | 23542271 | X | 14242373..14242581 | 225..17 | 1045 | 100 | Minus |
| X | 23542271 | X | 14240321..14240520 | 1963..1764 | 1000 | 100 | Minus |
| X | 23542271 | X | 14240588..14240785 | 1763..1566 | 990 | 100 | Minus |
| X | 23542271 | X | 14241178..14241319 | 1294..1153 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:55:23 has no hits.
BO16466.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:13 Download gff for
BO16466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-capping-enzyme-RA | 239..2185 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:59 Download gff for
BO16466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-cap-RA | 242..2188 | 17..1965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:44 Download gff for
BO16466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-cap-RA | 242..2188 | 17..1965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:44 Download gff for
BO16466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14240319..14240520 | 1764..1965 | 99 | <- | Minus |
| X | 14240588..14240784 | 1567..1763 | 100 | <- | Minus |
| X | 14240852..14241125 | 1293..1566 | 100 | <- | Minus |
| X | 14241180..14241318 | 1154..1292 | 100 | <- | Minus |
| X | 14241381..14242313 | 221..1153 | 100 | <- | Minus |
| X | 14242378..14242581 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:59 Download gff for
BO16466.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14134352..14134553 | 1764..1965 | 99 | <- | Minus |
| arm_X | 14134621..14134817 | 1567..1763 | 100 | <- | Minus |
| arm_X | 14134885..14135158 | 1293..1566 | 100 | <- | Minus |
| arm_X | 14135213..14135351 | 1154..1292 | 100 | <- | Minus |
| arm_X | 14135414..14136346 | 221..1153 | 100 | <- | Minus |
| arm_X | 14136411..14136614 | 17..220 | 100 | | Minus |
BO16466.3prime Sequence
664 bp (536 high quality bases) assembled on 2006-10-13
> BO16466.3prime
ATGGTCTAGAAAGCTTGCATTTCCTAATGTCGGGTTCACGCAGGGACGAC
GCTGGTGTTGGCCATGACCATGGGGATAAAAGTGGTTATGGTTGTGGTTT
TGGTTATGGGAATTGATCGGCGGCGGCATCATGACATGATCATTCCGATA
GCCAGAGCTTGCGATAAAGTTTAGTAGGTACTCCTTGGTGACTGGATGCT
TTATGCTGTCCACAACGGAGCGGGCTGTATTATAACTGTTGGGATTCTTT
TTGTCCGTTCGCTCGCGCATAAAGTCCCAGTTGCCAAACTGATTCATGGT
GCACTCAACGATTCTGTTGTCCAATTCTCTGGTCTCCTTCGTTAACCTTT
GCATCCGTCCATAGGGTGCATCGTGTCCGCCGACATAGAGGAAGCCCACC
TTTTTCGTCAGCAAGCCCTCGCCGCGCTCTGTTATGATCTTCAGCCGAAA
GTCCACCGAGTTGAGCTCATGTGGCTTCCATTTGAAGACATCGGAGCATG
TGCCAGCCGTGTAGGGCTGCTTTGATGGCTGGAAGATGAGGCCATCCGGT
TCGTGTGCCAGTGTCCGCGAGAATTTCTCACCCAGCAGCCGGGCAGACAT
CCAAATGTCCCAGAAGTCCTTGCCGCGCACACTGAACGCCTGCAGCCGCT
GATTGATGAATGCA
BO16466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1810-PA | 1950 | mRNA-capping-enzyme-RA | 1307..1947 | 659..19 | 3205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRNA-cap-RA | 2243 | CG1810-RA | 1548..2188 | 659..19 | 3205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14240852..14241095 | 416..659 | 1220 | 100 | Plus |
| X | 23542271 | X | 14240321..14240520 | 19..218 | 1000 | 100 | Plus |
| X | 23542271 | X | 14240588..14240785 | 219..416 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 05:47:52 has no hits.
BO16466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:56 Download gff for
BO16466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1810-PA | 1304..1950 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:20:41 Download gff for
BO16466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-cap-RA | 1545..2191 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:31:26 Download gff for
BO16466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-cap-RA | 1545..2191 | 15..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:31:26 Download gff for
BO16466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14240852..14241098 | 416..663 | 99 | | Plus |
| X | 14240318..14240520 | 15..218 | 99 | <- | Plus |
| X | 14240588..14240784 | 219..415 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:20:41 Download gff for
BO16466.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14134351..14134553 | 15..218 | 99 | <- | Plus |
| arm_X | 14134621..14134817 | 219..415 | 100 | <- | Plus |
| arm_X | 14134885..14135131 | 416..663 | 99 | | Plus |
BO16466.5prime Sequence
648 bp (575 high quality bases) assembled on 2006-10-13
> BO16466.5prime
GAAGTTATCAGTCGACATGGCCCTAACTAATCGGGATCGGGAACGGGGCT
CTGGTCCATTGCCCAATCGCTGGCTATACTGTCCGCGCAAGAGCGATACC
ATCATTGCGGAACGCTTCCTGGCCTTTAAGACCCCGCTGAGCAATAACTT
TCACGACAAGATGCCCATCGAGTGCACCTTTCAACCCGAGATGCTCTTCG
AATACTGCAAAACGCTAAAGGTGAAACTGGGCCTCTGGGTTGACCTGACC
AATACGAAACGATTCTACGATCGATCCGCAGTGGAGGAGCTCGGCGCGAA
ATATATTAAGCTGCAGTGCCGTGGACATGGCGAGACGCCATCGCCGGAGC
AGACGCACAGTTTCATCGAGATCGTGGACAACTTTATTAACGAACGTCCA
TTTGACGTTATAGCCGTGCACTGCACGCACGGTTTCAATCGCACTGGCTT
CCTGATTGTCTGCTATTTGGTCGAGCGACTCGATTGCTCCGTTTCGGCAG
CGCTCGCTATCTTTGCCAGCGCCCGGCCGCCGGGCATCTACAAGCAGGAT
TACATCAACGAGCTGTACAAACGCTACGAGGACACGAATGCCGCTCCAGC
GGCACCAGAACAGCCCATTTGGTGCCTGGACTATGATGATGGGGCACG
BO16466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1810-PA | 1950 | mRNA-capping-enzyme-RA | 1..626 | 17..642 | 3105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRNA-cap-RA | 2243 | CG1810-RA | 242..867 | 17..642 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14241892..14242315 | 642..219 | 2105 | 99.8 | Minus |
| X | 23542271 | X | 14242373..14242581 | 225..17 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 05:48:15 has no hits.
BO16466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:57 Download gff for
BO16466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1810-PA | 1..631 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:20:44 Download gff for
BO16466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-cap-RA | 242..872 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:31:30 Download gff for
BO16466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRNA-cap-RA | 242..872 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:31:30 Download gff for
BO16466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14241887..14242313 | 221..648 | 99 | <- | Minus |
| X | 14242378..14242581 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:20:44 Download gff for
BO16466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14135920..14136346 | 221..648 | 99 | <- | Minus |
| arm_X | 14136411..14136614 | 17..220 | 100 | | Minus |
BO16466.pep Sequence
Translation from 16 to 1981
> BO16466.pep
MALTNRDRERGSGPLPNRWLYCPRKSDTIIAERFLAFKTPLSNNFHDKMP
IECTFQPEMLFEYCKTLKVKLGLWVDLTNTKRFYDRSAVEELGAKYIKLQ
CRGHGETPSPEQTHSFIEIVDNFINERPFDVIAVHCTHGFNRTGFLIVCY
LVERLDCSVSAALAIFASARPPGIYKQDYINELYKRYEDTNAAPAAPEQP
NWCLDYDDGNGDGFVQDNSSSTSQQAGEQDDDAEEVEGEDAGGDCDASTS
DGQPRKKRRREMIIKNATFMAGVPGVRQVSDQPRLGDLQRKVQDWCDWKK
NGFPGAQPVSMDRENIKRLSEIPYRVSWKADGTRYMMLIDGRDEVYFFDR
NHSCFQVENVTFVESRNLNEHLDGTLVDGEMVLDKIGETVTPRYLIYDIV
RLSNRDVRDEPFYPNRLDYIKTEVIGPRILGMKHGIINQRLQAFSVRGKD
FWDIWMSARLLGEKFSRTLAHEPDGLIFQPSKQPYTAGTCSDVFKWKPHE
LNSVDFRLKIITERGEGLLTKKVGFLYVGGHDAPYGRMQRLTKETRELDN
RIVECTMNQFGNWDFMRERTDKKNPNSYNTARSVVDSIKHPVTKEYLLNF
IASSGYRNDHVMMPPPINSHNQNHNHNHFYPHGHGQHQRRPCVNPTLGNA
SFLDH
BO16466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRNA-cap-PA | 649 | CG1810-PA | 1..649 | 1..649 | 3527 | 100 | Plus |
| CG13197-PB | 343 | CG13197-PB | 5..170 | 15..183 | 242 | 34.9 | Plus |
| CG13197-PA | 343 | CG13197-PA | 5..170 | 15..183 | 242 | 34.9 | Plus |
