Clone Sequence Records
BO16467.3prime Sequence
891 bp (806 high quality bases) assembled on 2006-10-13
> BO16467.3prime
ATGGTCTAGAAAGCTTGCTTCTATCCTCTTCAAAGACTCTTTGGGAGGGT
CATCCTTCAGCTCGTGTATCTTGATCTTCTTGATGTACTTTCGCTGTTTC
GTTTTGTGCTTGAGCTGCTCGTGCTTGAGTGGTTCCATTCCGTTGACAGG
CGGCAGCTTGAACTGGTCATACGGGCGCTCCTTCACCTTGGCAATGGCGT
CCTCCAGCTTGAGACCGGACAGTCCCTGCTCCTCGTAGTACAGGCGGTAT
TTATCACAGAACTTAGAGTGGCCCTTCTTAAAGGCTGCCGTCTTGGTTGA
TGGATGTCTGGCATCAATGGCTCGCGCACAACCTCTGTGAAAGTTGTGCA
GGTGCCGCAGGAAGGCTTCATTTGGCTTAAGGCCCTCCTCCAGACTCAAC
TGAATGATCTCGTTGACGTAGCTAAAGGATTTGTTAGCACATCCCTGCCG
CAGCATGGCCCCCAGTATGGGCATGTTCATCTTAATGCCCGCCACATGCA
TCTGTTCCAGCAGTTCCCTAGCCTCTTCCTGCGTGCGACAACCCAAAGCG
AGCACACCGTAGGTGACAATGTCCGGCCGCAAACCCGCCGTGCGAATCAT
GAGGAGCACTTCCTTGGCACTCTCGTAATCAAAGCGCATGGAACGCTTTT
TAATCAGTATGTTGAAGAAGTCGATGTCCGCCTTGAGGCCAATCTTGCGC
ACAAACGTGAGCAGCTGCTTCTCGGCAGCATTTGTGGGCGGTATCACCTC
CAGCATTGCGGTAAATGTCTCGATGTCCGGTGTAATGTTGTGCTGCTTCA
TGTGCTCCAGAAAGCCAGTGAGACCGCCGAGTAGCAAGAAACGTTCGTGT
GGACGTGTCACCTCCTCCAGGGCCACCAGACTGCCCAGATG
BO16467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-PA | 2112 | CG4611-RA | 1237..2109 | 891..19 | 4365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-RA | 2248 | CG4611-RA | 1333..2205 | 891..19 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5137708..5138292 | 891..307 | 2925 | 100 | Minus |
| 3L | 28110227 | 3L | 5138349..5138636 | 306..19 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:13:33 has no hits.
BO16467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:57 Download gff for
BO16467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-PA | 1237..2112 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:31:16 Download gff for
BO16467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 1333..2211 | 12..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:32 Download gff for
BO16467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 1333..2211 | 12..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:32 Download gff for
BO16467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5137708..5138292 | 307..891 | 100 | -> | Minus |
| 3L | 5138349..5138642 | 12..306 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:31:16 Download gff for
BO16467.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5130808..5131392 | 307..891 | 100 | -> | Minus |
| arm_3L | 5131449..5131742 | 12..306 | 99 | | Minus |
BO16467.5prime Sequence
811 bp (734 high quality bases) assembled on 2006-10-13
> BO16467.5prime
GAAGTTATCAGTCGACATGGCTCTGCGGTTGATTAGCCGTTCAATGAGCT
GCCACATACGTGGCTTGCAATTAAATGCCACCGGAAGACGGTTAAATAGT
TACAACATCAGCCGGCTGGTTATTCTGCCTGCAACTTGGTCTTGCTCACA
AAATCGCCTGCTGCACGTGAGGATTACGGATCAACAAGCCGGTTTGGAGA
CCAAACGAGAGGCCAACAGGAACCAGAATCCTTTTCGCGAAGAAGTTTTT
GAAGAACTTATCACAGCAGCACCCAAGGAGCACCAGAAGTTTAAGCCAGA
AAAGAAACCCAAAGAGAAGTCCACCAAAAAGGTGCAGGATTTTGGTGATC
CGGACACCTTTGGCGATGCCAAGGTGGCTGCAACAGAAGACCCGGGTGAT
GTCGAGGAAGAGGAGTTCCTTAGCAATTCCACTAGGCGCTCAAAGAAACT
AAAAGCCGTGGAATACGCCCGCCAAATTAAGGACCATCTTAAGGCGAATC
GCCTAAATGAGGCCATCGCCGTGCTGGAGCAACGGATGCTAAAGGAGGAT
CGCGCCAAGCCGGACAAGTACATATACAATCTGCTGATCAGTGGCTGTGC
CAAGGCGGGCTACACCCGCAAGGCCTTCTTCCTGTACACCAAGATGCGGC
AACGTGGTCTTCAAGTCACCGGAGGAACCTACACTTCGCTATTCAACGCC
TGCGCCAATGCTCCCTCCGTGAGCGATGGCCTGGCCAAGGCCCAAATCCT
GCGGGAGAACATGCTCGAGAAGGGCTACGAAACAAATGTGNAAAACTACA
ATGCCATGATC
BO16467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-PA | 2112 | CG4611-RA | 1..795 | 17..811 | 3931 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-RA | 2248 | CG4611-RA | 95..891 | 15..811 | 3959 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5136470..5137266 | 15..811 | 3959 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:45:28 has no hits.
BO16467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:58 Download gff for
BO16467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:25 Download gff for
BO16467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 89..891 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:04 Download gff for
BO16467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 89..891 | 9..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:04 Download gff for
BO16467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5136464..5137266 | 9..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:25 Download gff for
BO16467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5129564..5130366 | 9..811 | 99 | | Plus |
BO16467.complete Sequence
2143 bp assembled on 2007-11-02
GenBank Submission: FJ633843
> BO16467.complete
GAAGTTATCAGTCGACATGGCTCTGCGGTTGATTAGCCGTTCAATGAGCT
GCCACATACGTGGCTTGCAATTAAATGCCACCGGAAGACGGTTAAATAGT
TACAACATCAGCCGGCTGGTTATTCTGCCTGCAACTTGGTCTTGCTCACA
AAATCGCCTGCTGCACGTGAGGATTACGGATCAACAAGCCGGTTTGGAGA
CCAAACGAGAGGCCAACAGGAACCAGAATCCTTTTCGCGAAGAAGTTTTT
GAAGAACTTATCACAGCAGCACCCAAGGAGCACCAGAAGTTTAAGCCAGA
AAAGAAACCCAAAGAGAAGTCCACCAAAAAGGTGCAGGATTTTGGTGATC
CGGACACCTTTGGCGATGCCAAGGTGGCTGCAACAGAAGACCCGGGTGAT
GTCGAGGAAGAGGAGTTCCTTAGCAATTCCACTAGGCGCTCAAAGAAACT
AAAAGCCGTGGAATACGCCCGCCAAATTAAGGACCATCTTAAGGCGAATC
GCCTAAATGAGGCCATCGCCGTGCTGGAGCAACGGATGCTAAAGGAGGAT
CGCGCCAAGCCGGACAAGTACATATACAATCTGCTGATCAGTGGCTGTGC
CAAGGCGGGCTACACCCGCAAGGCCTTCTTCCTGTACACCAAGATGCGGC
AACGTGGTCTTCAAGTCACCGGAGGAACCTACACTTCGCTATTCAACGCC
TGCGCCAATGCTCCCTCCGTGAGCGATGGCCTGGCCAAGGCCCAAATCCT
GCGGGAGAACATGCTCGAGAAGGGCTACGAACCAAATGTGAAAAACTACA
ATGCCATGATCAAGGCGTATGGAAGGTGTGGCGATGTGGACACCGCCTAC
ATGCTGGCCGACGAAATGATGGAGCGCCAGCTGGAACTGAATGCAGATAC
ATTCAACTTTCTGCTGCAGGCGTGTGCCAGCAACTCGGAGCACGGTTTCC
GGCATGCTCTGCTGACTTGGCACAACATGTTGCAGCGAGGTATTAGCCCG
GACTACTACAGCTTCAATGCAATGCTGAGATGTGCAAGGGATTGTGGCTT
CGGTGACTTGGATTCCATGCGAGAGGTTATCGATAAAATTGCGCCCTCAG
CTGCTAGAAAGAAACCAGTTCTCCAGTTGGAGAAAGGTCAGCAAGATGAT
TTACCCAGTGTGGAAGCCAACACAACTACGTTGCCTGCCCAAATTGAGGT
GGCCACCACAGCGAGCGAGCTGGAACTGCCCAATCTTTTGCTGCCTCAGC
CGCATCTGGGCAGTCTGGTGGCCCTGGAGGAGGTGACACGTCCACACGAA
CGTTTCTTGCTACTCGGCGGTCTCACTGGCTTTCTGGAGCACATGAAGCA
GCACAACATTACACCGGACATCGAGACATTTACCGCAATGCTGGAGGTGA
TACCGCCCACAAATGCTGCCGAGAAGCAGCTGCTCACGTTTGTGCGCAAG
ATTGGCCTCAAGGCGGACATCGACTTCTTCAACATACTGATTAAAAAGCG
TTCCATGCGCTTTGATTACGAGAGTGCCAAGGAAGTGCTCCTCATGATTC
GCACGGCGGGTTTGCGGCCGGACATTGTCACCTACGGTGTGCTCGCTTTG
GGTTGTCGCACGCAGGAAGAGGCTAGGGAACTGCTGGAACAGATGCATGT
GGCGGGCATTAAGATGAACATGCCCATACTGGGGGCCATGCTGCGGCAGG
GATGTGCTAACAAATCCTTTAGCTACGTCAACGAGATCATTCAGTTGAGT
CTGGAGGAGGGCCTTAAGCCAAATGAAGCCTTCCTGCGGCACCTGCACAA
CTTTCACAGAGGTTGTGCGCGAGCCATTGATGCCAGACATCCATCAACCA
AGACGGCAGCCTTTAAGAAGGGCCACTCTAAGTTCTGTGATAAATACCGC
CTGTACTACGAGGAGCAGGGACTGTCCGGTCTCAAGCTGGAGGACGCCAT
TGCCAAGGTGAAGGAGCGCCCGTATGACCAGTTCAAGCTGCCGCCTGTCA
ACGGAATGGAACCACTCAAGCACGAGCAGCTCAAGCACAAAACGAAACAG
CGAAAGTACATCAAGAAGATCAAGATACACGAGCTGAAGGATGACCCTCC
CAAAGAGTCTTTGAAGAGGATAGAAGCAAGCTTTCTAGACCAT
BO16467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-RA | 2112 | CG4611-PA | 1..2109 | 17..2125 | 10545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-RA | 2248 | CG4611-RA | 95..2205 | 15..2125 | 10555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5136470..5138292 | 15..1837 | 9115 | 100 | Plus |
| 3L | 28110227 | 3L | 5138349..5138636 | 1838..2125 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:46:07 has no hits.
BO16467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:09 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 1..2112 | 17..2129 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:47 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 83..2205 | 9..2132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:54 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 97..2205 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:00 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 91..2199 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:26 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4611-RA | 97..2205 | 17..2127 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:26 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5138349..5138636 | 1838..2127 | 99 | | Plus |
| 3L | 5136472..5138292 | 17..1837 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:54 Download gff for
BO16467.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5129572..5131392 | 17..1837 | 100 | -> | Plus |
| arm_3L | 5131449..5131736 | 1838..2127 | 99 | | Plus |
BO16467.pep Sequence
Translation from 16 to 2143
> BO16467.pep
MALRLISRSMSCHIRGLQLNATGRRLNSYNISRLVILPATWSCSQNRLLH
VRITDQQAGLETKREANRNQNPFREEVFEELITAAPKEHQKFKPEKKPKE
KSTKKVQDFGDPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVEY
ARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYT
RKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENML
EKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLL
QACASNSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGDLDS
MREVIDKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTAS
ELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITP
DIETFTAMLEVIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFD
YESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQEEARELLEQMHVAGIKM
NMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLRHLHNFHRGC
ARAIDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKE
RPYDQFKLPPVNGMEPLKHEQLKHKTKQRKYIKKIKIHELKDDPPKESLK
RIEASFLDH
BO16467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4611-PA | 703 | CG4611-PA | 1..703 | 1..703 | 3635 | 100 | Plus |
