Clone Sequence Records
BO16468.complete Sequence
1804 bp assembled on 2010-04-13
GenBank Submission: KX794395
> BO16468.complete
GAAGTTATCAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGT
CGGACAAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGC
TTTGACCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGG
CCTGAAGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCG
GTGGACGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCC
CGCACCACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCT
TATCCAGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGA
AGCCTGATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGC
GTTACTCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGT
CTGCGAAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGG
GGAATACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACG
CACACCGCCACCTACGATGATGCCATCTCAGATTACTTCAGGAAACAGTA
TGGATCTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACC
AGAAGCCGGCTCAGCTCTACACGCAGCTGGCCAAGCTTCCACTGACGGTC
CTCAATGCCTCGCCGGGATTTATCAACCTGTGCGACGCCCTCAACGGTTG
GCAGTTGGTTAGGGAACTGAAGAAGGCTCTGCAGCTGCCGGCGGCCACCA
GCTTTAAGCACGTTTCTCCAGCGGGTGCGGCTGTTGGAGTGCCTCTAAAT
CCGGCACAGGCCAAGCTGTGCATGGTGGATGATCTGTACGAGCAGTTGAC
ACCTCTGGCAACGGCCTATGCTCGTGCCCGTGGTGCCGACCGCATGAGCT
CCTTCGGCGACTTTGTGGCCCTCTCTGATGTGTGCGATGTTGTGACGGCC
AGGATAATCTCGCGAGAGGTGTCCGATGGTATTATTGCCGCGGGTTATGA
GCCCGAAGCTCTGGAGATCCTGAAGAAAAAGAAGAATGGCGGCTACTGTA
TACTGCAGATGGACCCCAACTACGAACCCTCCGCGGTGGAGCGCAAGACT
ATTTTTGGTCTGACGCTGGAGCAGAAGCGCAACGATGCTGTCATCGACGC
CTCGCTCTTTTCCAATGTGGTGAGCAAGCGTGGTCCTCTGCCCGAGGTGG
CTGTGCGGGATCTGATCGTGGCCACCATTGCCTTGAAGTACACTCAGAGC
AACTCCGTGTGCTACGCCCGCGATGGCCAGGTCGTGGGCATCGGTGCCGG
CCAGCAGTCGAGGATTCACTGCACCCGCTTGGCGGGCGAGAAGGCGGACA
ACTGGTGGCTGCGTCAGCATCCCAGCGTGGCCGGCATGAAGTTCAAGGCT
GGTGTGAAGCGGGCGGAGATCTCTAATGCAATCGACAATTACGTAAACGG
AACTGTGGGCAAGGACATGCCTTTGTCGCAGTTCGAGGGAATGTTCGATA
AGGCACCAGCCCAACTGACCAGTGAGCAAAAAGTGGAATGGTTAAAGCAG
CTGAGTGGCGTGGCCTTGGGATCCGATGCCTTCTTCCCCTTCCGTGATAA
TATCGATCGCGCTAGCCTGAGCGGCGTCTCCTACATAGCCAGTCCCGCAG
GATCCACCAATGATGCTGGTGTCATTGCCGCCTGCGATGAGCACGGTATC
ATCATGGCCCATACCAATCTGCGATTGTTCCACCATGCAAGCTTTCTAGA
CCAT
BO16468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-RB | 1773 | CG11089-PB | 1..1770 | 17..1786 | 8835 | 99.9 | Plus |
| CG11089-RA | 1773 | CG11089-PA | 1..1770 | 17..1786 | 8835 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-RB | 2195 | CG11089-RB | 57..1827 | 16..1786 | 8840 | 99.9 | Plus |
| CG11089-RA | 2272 | CG11089-RA | 134..1904 | 16..1786 | 8840 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24879176..24880249 | 35..1108 | 5355 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24880311..24880748 | 1107..1544 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 24880806..24880932 | 1543..1669 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 24880993..24881110 | 1669..1786 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:54:34 has no hits.
BO16468.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:12 Download gff for
BO16468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RA | 112..1881 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:51 Download gff for
BO16468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RE | 1954..3723 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:29 Download gff for
BO16468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RA | 135..1904 | 17..1788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:29 Download gff for
BO16468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24880806..24880932 | 1543..1669 | 100 | -> | Plus |
| 3R | 24880994..24881110 | 1670..1788 | 98 | | Plus |
| 3R | 24880313..24880746 | 1109..1542 | 100 | -> | Plus |
| 3R | 24879101..24879119 | 17..35 | 100 | -> | Plus |
| 3R | 24879177..24880249 | 36..1108 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:51 Download gff for
BO16468.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20704823..20704841 | 17..35 | 100 | -> | Plus |
| arm_3R | 20704899..20705971 | 36..1108 | 99 | -> | Plus |
| arm_3R | 20706035..20706468 | 1109..1542 | 100 | -> | Plus |
| arm_3R | 20706528..20706654 | 1543..1669 | 100 | -> | Plus |
| arm_3R | 20706716..20706832 | 1670..1788 | 98 | | Plus |
BO16468.3prime Sequence
704 bp (681 high quality bases) assembled on 2006-10-13
> BO16468.3prime
ATGGTCTAGAAAGCTTGCATGGTGGAACAATCGCAGATTGGTATGGGCCA
TGATGATACCGTGCTCATCGCAGGCGGCAATGACACCAGCATCATTGGTG
GATCCTGCGGGACTGGCTATGTAGGAGACGCCGCTCAGGCTAGCGCGATC
GATATTATCACGGAAGGGGAAGAAGGCATCGGATCCCAAGGCCACGCCAC
TCAGCTGCTTTAACCATTCCACTTTTTGCTCACTGGTCAGTTGGGCTGGT
GCCTTATCGAACATTCCCTCGAACTGCGACAAAGGCATGTCCTTGCCCAC
AGTTCCGTTTACGTAATTGTCGATTGCATTAGAGATCTCCGCCCGCTTCA
CACCAGCCTTGAACTTCATGCCGGCCACGCTGGGATGCTGACGCAGCCAC
CAGTTGTCCGCCTTCTCGCCCGCCAAGCGGGTGCAGTGAATCCTCGACTG
CTGGCCGGCACCGATGCCCACGACCTGGCCATCGCGGGCGTAGCACACGG
AGTTGCTCTGAGTGTACTTCAAGGCAATGGTGGCCACGATCAGATCCCGC
ACAGCCACCTCGGGCAGAGGACCACGCTTGCTCACCACATTGGAAAAGAG
CGAGGCGTCGATGACAGCATCGTTGCGCTTCTGCTCCAGCGTCAGACCAA
AAATAGTCTTGCGCTCCACCGCGGAGGGTTCGTAGTTGGGGTCCATCTGC
AGTA
BO16468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-PA | 1773 | CG11089-RA | 1085..1770 | 704..19 | 3430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-RB | 2195 | CG11089-RB | 1142..1827 | 704..19 | 3430 | 100 | Minus |
| CG11089-RA | 2272 | CG11089-RA | 1219..1904 | 704..19 | 3430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24880311..24880748 | 698..261 | 2190 | 100 | Minus |
| 3R | 32079331 | 3R | 24880806..24880932 | 262..136 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 24880993..24881110 | 136..19 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:15:42 has no hits.
BO16468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:59 Download gff for
BO16468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-PA | 1086..1773 | 18..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:09:23 Download gff for
BO16468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RE | 3039..3729 | 11..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:47 Download gff for
BO16468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RA | 1220..1910 | 11..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:47 Download gff for
BO16468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24880305..24880746 | 263..703 | 99 | -> | Minus |
| 3R | 24880806..24880932 | 136..262 | 100 | -> | Minus |
| 3R | 24880994..24881116 | 11..135 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:09:23 Download gff for
BO16468.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20706027..20706468 | 263..703 | 99 | -> | Minus |
| arm_3R | 20706528..20706654 | 136..262 | 100 | -> | Minus |
| arm_3R | 20706716..20706838 | 11..135 | 96 | | Minus |
BO16468.5prime Sequence
711 bp (588 high quality bases) assembled on 2006-10-13
> BO16468.5prime
GAAGTTATCAGTCGACATGAGCTCCAGCAAGATTGCTCTTCTCAGTGTGT
CGGACAAGACGGGCCTGCTCGACTTGGGCAAGAGTTTGGTGGCACTGGGC
TTTGACCTGGTTGCCAGTGGAGGCACTGCAACTAGCTTGCGTGGCGCTGG
CCTGAAGGTGAGGGATGTCTCGGAGATTACAGGAGCACCTGAGATGCTCG
GTGGACGTGTGAAGACGCTGCACCCGGCTGTGCATGCTGGAATCCTTTCC
CGCACCACCGACTCTGATCTGGCTGACATGCGCAAGCAGGGCTTCGATCT
TATCCAGCTGGTGGTCTGCAATCTGTACCCCTTCGCCAGCACCGTAGCGA
AGCCTGATGTTACGCTGGCCGATGCCGTGGAGAACATCGATATTGGAGGC
GTTACTCTGCTCCGGGCGGCTGCTAAGAATCACCAGCGAGTCACAGTTGT
CTGCGAAGCAGTGGATTATGATCGTGTCCTGTCGGAGTTGAAGGCTTCGG
GGAATACCACCGTGGAGACGCGTCAGGCTCTGGCTCTCAAGGCATTCACG
CACACCGCCACCTACGATGATGCCATCTCAGATTACTTCANGAAACAGTA
TGGATCTGGGGTGTCCCAGCTACCGTTGCGCTATGGCATGAATCCCCACC
AGAAGCCGGCTCAGCTCTACACGCAGCTGGGCAAGCTTCCACTGACGGTC
CCTCATGCCTC
BO16468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-PA | 1773 | CG11089-RA | 1..685 | 17..701 | 3381 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-RB | 2195 | CG11089-RB | 57..752 | 16..711 | 3409 | 99.4 | Plus |
| CG11089-RA | 2272 | CG11089-RA | 134..829 | 16..711 | 3409 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24879176..24879852 | 35..711 | 3314 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:48:00 has no hits.
BO16468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:59 Download gff for
BO16468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-PA | 1..695 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:26:42 Download gff for
BO16468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RE | 1944..2648 | 7..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:44:26 Download gff for
BO16468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11089-RA | 125..829 | 7..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:44:26 Download gff for
BO16468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24879177..24879852 | 36..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:26:42 Download gff for
BO16468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20704899..20705574 | 36..711 | 99 | | Plus |
BO16468.pep Sequence
Translation from 16 to 1804
> BO16468.pep
MSSSKIALLSVSDKTGLLDLGKSLVALGFDLVASGGTATSLRGAGLKVRD
VSEITGAPEMLGGRVKTLHPAVHAGILSRTTDSDLADMRKQGFDLIQLVV
CNLYPFASTVAKPDVTLADAVENIDIGGVTLLRAAAKNHQRVTVVCEAVD
YDRVLSELKASGNTTVETRQALALKAFTHTATYDDAISDYFRKQYGSGVS
QLPLRYGMNPHQKPAQLYTQLAKLPLTVLNASPGFINLCDALNGWQLVRE
LKKALQLPAATSFKHVSPAGAAVGVPLNPAQAKLCMVDDLYEQLTPLATA
YARARGADRMSSFGDFVALSDVCDVVTARIISREVSDGIIAAGYEPEALE
ILKKKKNGGYCILQMDPNYEPSAVERKTIFGLTLEQKRNDAVIDASLFSN
VVSKRGPLPEVAVRDLIVATIALKYTQSNSVCYARDGQVVGIGAGQQSRI
HCTRLAGEKADNWWLRQHPSVAGMKFKAGVKRAEISNAIDNYVNGTVGKD
MPLSQFEGMFDKAPAQLTSEQKVEWLKQLSGVALGSDAFFPFRDNIDRAS
LSGVSYIASPAGSTNDAGVIAACDEHGIIMAHTNLRLFHHASFLDH
BO16468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11089-PB | 590 | CG11089-PB | 1..590 | 1..590 | 2998 | 100 | Plus |
| CG11089-PA | 590 | CG11089-PA | 1..590 | 1..590 | 2998 | 100 | Plus |
