Clone BO16470 Report

Search the DGRC for BO16470

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG33993-RA
Protein status:BO16470.pep: validated full length
Sequenced Size:1297

Clone Sequence Records

BO16470.3prime Sequence

717 bp (623 high quality bases) assembled on 2006-10-13

> BO16470.3prime
ATGGTCTAGAAAGCTTGCCACATTCAAATCGGCCATCATTTTGCGAAAGT
CGTTCAGCGAGCCATACATCTCGAAGTCCGCTCCCCCGTTTCCGGTTCCG
CCTGCGTAGGCGCCCTGCGATCGTTGCGATCGGGTACTAGGTGGGCGTGG
CAGGGTCAGCGGCACGGGCAACAGTTCCGGCATCACCGAGTGGTGCGTGA
TCAGCGCCTTCAGCGAACTGAACTCCTTGGTGAAGCCCTTTATCTTGTAG
CCCCTTTGCGTCCGCAGGATCAGATAGTGGGCCACTCGTGGTGAAGGTGG
TGGCACTCGCAGCGAGAGGGCGAAACATCCCGGCTTTGTGCTGCTCTGGC
GCACTAGAAACGCACCTGGACTCTGTCGGGACAGGGCCTCCAGGGATATT
TCCCTGGGAATGCCCGCTTGAAACCAGGCGGCTCCCTTAAGCTCCTGCTG
CTCGGCTAGGCTGAGATTATCCAGGCGCAGGGCACTGTGGCCGGGAAACA
ATTTCGGACTGGAGTTGGCGCTGCACGTCTCTCTCAGATACTTTTTGCTG
GCGGCGGGCAGCTCCACCTGCAGCCGCTGGGTGGCACTCTCCAGTGCGGA
CAGTGACTGGCGGCAGGAGTCGCCGAACTTGCTGGCCACGTACTTGTCCG
GCTCGCAGATGGCCTCGTTCACATAGCCATCGGAGATGGTCTGAGTGGAT
CCACAGCCGGATCCGGA

BO16470.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 1266 CG33993-RA 565..1263 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RB 1316 CG33993-RB 210..908 717..19 3495 100 Minus
CG33993-RA 2404 CG33993-RA 969..1667 717..19 3495 100 Minus
PVRAP-RA 2919 CG32406-RA 1810..2118 444..140 295 73.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5934053..5934335 237..519 1415 100 Plus
3L 28110227 3L 5933773..5933993 19..239 1105 100 Plus
3L 28110227 3L 5934405..5934603 519..717 995 100 Plus
3L 28110227 3L 6025442..6025509 213..146 205 86.8 Minus
Blast to na_te.dros performed on 2015-02-12 11:01:46 has no hits.

BO16470.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:00 Download gff for BO16470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-PA 566..1266 16..716 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:05 Download gff for BO16470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 970..1675 12..716 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:48 Download gff for BO16470.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 970..1675 12..716 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:48 Download gff for BO16470.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5933765..5933991 12..237 98 <- Plus
3L 5934054..5934334 238..518 100 <- Plus
3L 5934405..5934602 519..716 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:05 Download gff for BO16470.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5926865..5927091 12..237 98 <- Plus
arm_3L 5927154..5927434 238..518 100 <- Plus
arm_3L 5927505..5927702 519..716 100   Plus

BO16470.5prime Sequence

705 bp (681 high quality bases) assembled on 2006-10-13

> BO16470.5prime
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGGCCGCAGTCACTGTCC
GCACT

BO16470.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 1266 CG33993-RA 1..668 17..684 3340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 2404 CG33993-RA 405..1093 17..705 3400 99.7 Plus
CG33993-RB 1316 CG33993-RB 118..334 489..705 1040 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5937397..5937735 492..154 1695 100 Minus
3L 28110227 3L 5934479..5934694 705..490 1035 98.6 Minus
3L 28110227 3L 5937829..5937968 156..17 700 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:04:13 has no hits.

BO16470.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:02 Download gff for BO16470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-PA 1..689 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:20 Download gff for BO16470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 393..1093 6..705 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:05 Download gff for BO16470.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 393..1093 6..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:05 Download gff for BO16470.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5934479..5934693 491..705 99 <- Minus
3L 5937399..5937732 157..490 100 <- Minus
3L 5937829..5937980 6..156 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:20 Download gff for BO16470.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5927579..5927793 491..705 99 <- Minus
arm_3L 5930499..5930832 157..490 100 <- Minus
arm_3L 5930929..5931080 6..156 96   Minus

BO16470.complete Sequence

1297 bp assembled on 2006-10-11

GenBank Submission: FJ638749

> BO16470.complete
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCC
GCACTGGAGAGTGCCACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAG
CAAAAAGTATCTGAGAGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGT
TTCCCGGCCACAGTGCCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAG
CAGGAGCTTAAGGGAGCCGCCTGGTTTCAAGCGGGCATTCCCAGGGAAAT
ATCCCTGGAGGCCCTGTCCCGACAGAGTCCAGGTGCGTTTCTAGTGCGCC
AGAGCAGCACAAAGCCGGGATGTTTCGCCCTCTCGCTGCGAGTGCCACCA
CCTTCACCACGAGTGGCCCACTATCTGATCCTGCGGACGCAAAGGGGCTA
CAAGATAAAGGGCTTCACCAAGGAGTTCAGTTCGCTGAAGGCGCTGATCA
CGCACCACTCGGTGATGCCGGAACTGTTGCCCGTGCCGCTGACCCTGCCA
CGCCCACCTAGTACCCGATCGCAACGATCGCAGGGCGCCTACGCAGGCGG
AACCGGAAACGGGGGAGCGGACTTCGAGATGTATGGCTCGCTGAACGACT
TTCGCAAAATGATGGCCGATTTGAATGTGGCAAGCTTTCTAGACCAT

BO16470.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 1266 CG33993-PA 1..1263 17..1279 6315 100 Plus
CG33993-RB 777 CG33993-PB 1..774 506..1279 3870 100 Plus
PVRAP-RA 1425 CG32406-PA 1006..1307 854..1152 260 73.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-RA 2404 CG33993-RA 405..1667 17..1279 6315 100 Plus
CG33993-RB 1316 CG33993-RB 118..908 489..1279 3955 100 Plus
PVRAP-RA 2919 CG32406-RA 1810..2111 854..1152 260 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5937397..5937735 492..154 1695 100 Minus
3L 28110227 3L 5934405..5934694 779..490 1450 100 Minus
3L 28110227 3L 5934053..5934335 1061..779 1415 100 Minus
3L 28110227 3L 5933773..5933993 1279..1059 1105 100 Minus
3L 28110227 3L 5937829..5937968 156..17 700 100 Minus
3L 28110227 3L 6025442..6025509 1085..1152 205 86.8 Plus
Blast to na_te.dros performed on 2014-11-26 21:35:55 has no hits.

BO16470.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:10 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 1..1266 17..1282 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:51 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 390..1672 6..1286 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:12 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 405..1667 17..1281 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:10 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 390..1672 6..1286 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:29 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
CG33993-RA 405..1667 17..1281 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:29 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5937399..5937732 157..490 100 <- Minus
3L 5934405..5934693 491..779 100 <- Minus
3L 5937829..5937968 17..156 100   Minus
3L 5933769..5933991 1061..1281 99 <- Minus
3L 5934054..5934334 780..1060 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:12 Download gff for BO16470.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5926869..5927091 1061..1281 99 <- Minus
arm_3L 5927154..5927434 780..1060 100 <- Minus
arm_3L 5927505..5927793 491..779 100 <- Minus
arm_3L 5930499..5930832 157..490 100 <- Minus
arm_3L 5930929..5931068 17..156 100   Minus

BO16470.pep Sequence

Translation from 16 to 1297

> BO16470.pep
MIMQDIRLRLEPQHSKATFISSSSASSSSSQTAETTLIETAEKSPASEAA
AGTVTTTSPQHFFHHHHPPAHPHPPRQQPHPHSHSHPHPHPQLQRRPVEQ
LHLLHSHHDVQELSGQEHPHPQPGSHPHPHHLRSPSSEEDNSPTEMNNCR
RLVDKPPLVKRLTMGIGLLRGTEDSRPLMHSTCGSSLTSGSGCGSTQTIS
DGYVNEAICEPDKYVASKFGDSCRQSLSALESATQRLQVELPAASKKYLR
ETCSANSSPKLFPGHSALRLDNLSLAEQQELKGAAWFQAGIPREISLEAL
SRQSPGAFLVRQSSTKPGCFALSLRVPPPSPRVAHYLILRTQRGYKIKGF
TKEFSSLKALITHHSVMPELLPVPLTLPRPPSTRSQRSQGAYAGGTGNGG
ADFEMYGSLNDFRKMMADLNVASFLDH

BO16470.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG33993-PA 421 CG33993-PA 1..421 1..421 2228 100 Plus
CG33993-PB 258 CG33993-PB 1..258 164..421 1330 100 Plus
PVRAP-PA 474 CG32406-PA 183..468 133..421 686 51.9 Plus
CG10479-PA 378 CG10479-PA 240..340 277..379 189 44.2 Plus
CG10479-PB 379 CG10479-PB 241..341 277..379 189 44.2 Plus