Clone Sequence Records
BO16470.3prime Sequence
717 bp (623 high quality bases) assembled on 2006-10-13
> BO16470.3prime
ATGGTCTAGAAAGCTTGCCACATTCAAATCGGCCATCATTTTGCGAAAGT
CGTTCAGCGAGCCATACATCTCGAAGTCCGCTCCCCCGTTTCCGGTTCCG
CCTGCGTAGGCGCCCTGCGATCGTTGCGATCGGGTACTAGGTGGGCGTGG
CAGGGTCAGCGGCACGGGCAACAGTTCCGGCATCACCGAGTGGTGCGTGA
TCAGCGCCTTCAGCGAACTGAACTCCTTGGTGAAGCCCTTTATCTTGTAG
CCCCTTTGCGTCCGCAGGATCAGATAGTGGGCCACTCGTGGTGAAGGTGG
TGGCACTCGCAGCGAGAGGGCGAAACATCCCGGCTTTGTGCTGCTCTGGC
GCACTAGAAACGCACCTGGACTCTGTCGGGACAGGGCCTCCAGGGATATT
TCCCTGGGAATGCCCGCTTGAAACCAGGCGGCTCCCTTAAGCTCCTGCTG
CTCGGCTAGGCTGAGATTATCCAGGCGCAGGGCACTGTGGCCGGGAAACA
ATTTCGGACTGGAGTTGGCGCTGCACGTCTCTCTCAGATACTTTTTGCTG
GCGGCGGGCAGCTCCACCTGCAGCCGCTGGGTGGCACTCTCCAGTGCGGA
CAGTGACTGGCGGCAGGAGTCGCCGAACTTGCTGGCCACGTACTTGTCCG
GCTCGCAGATGGCCTCGTTCACATAGCCATCGGAGATGGTCTGAGTGGAT
CCACAGCCGGATCCGGA
BO16470.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-PA | 1266 | CG33993-RA | 565..1263 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RB | 1316 | CG33993-RB | 210..908 | 717..19 | 3495 | 100 | Minus |
CG33993-RA | 2404 | CG33993-RA | 969..1667 | 717..19 | 3495 | 100 | Minus |
PVRAP-RA | 2919 | CG32406-RA | 1810..2118 | 444..140 | 295 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5934053..5934335 | 237..519 | 1415 | 100 | Plus |
3L | 28110227 | 3L | 5933773..5933993 | 19..239 | 1105 | 100 | Plus |
3L | 28110227 | 3L | 5934405..5934603 | 519..717 | 995 | 100 | Plus |
3L | 28110227 | 3L | 6025442..6025509 | 213..146 | 205 | 86.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:46 has no hits.
BO16470.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:00 Download gff for
BO16470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-PA | 566..1266 | 16..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:05 Download gff for
BO16470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 970..1675 | 12..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:48 Download gff for
BO16470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 970..1675 | 12..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:48 Download gff for
BO16470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5933765..5933991 | 12..237 | 98 | <- | Plus |
3L | 5934054..5934334 | 238..518 | 100 | <- | Plus |
3L | 5934405..5934602 | 519..716 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:05 Download gff for
BO16470.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5926865..5927091 | 12..237 | 98 | <- | Plus |
arm_3L | 5927154..5927434 | 238..518 | 100 | <- | Plus |
arm_3L | 5927505..5927702 | 519..716 | 100 | | Plus |
BO16470.5prime Sequence
705 bp (681 high quality bases) assembled on 2006-10-13
> BO16470.5prime
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGGCCGCAGTCACTGTCC
GCACT
BO16470.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-PA | 1266 | CG33993-RA | 1..668 | 17..684 | 3340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 2404 | CG33993-RA | 405..1093 | 17..705 | 3400 | 99.7 | Plus |
CG33993-RB | 1316 | CG33993-RB | 118..334 | 489..705 | 1040 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5937397..5937735 | 492..154 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5934479..5934694 | 705..490 | 1035 | 98.6 | Minus |
3L | 28110227 | 3L | 5937829..5937968 | 156..17 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:04:13 has no hits.
BO16470.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:02 Download gff for
BO16470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-PA | 1..689 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:20 Download gff for
BO16470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 393..1093 | 6..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:05 Download gff for
BO16470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 393..1093 | 6..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:05 Download gff for
BO16470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5934479..5934693 | 491..705 | 99 | <- | Minus |
3L | 5937399..5937732 | 157..490 | 100 | <- | Minus |
3L | 5937829..5937980 | 6..156 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:20 Download gff for
BO16470.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5927579..5927793 | 491..705 | 99 | <- | Minus |
arm_3L | 5930499..5930832 | 157..490 | 100 | <- | Minus |
arm_3L | 5930929..5931080 | 6..156 | 96 | | Minus |
BO16470.complete Sequence
1297 bp assembled on 2006-10-11
GenBank Submission: FJ638749
> BO16470.complete
GAAGTTATCAGTCGACATGATCATGCAGGATATACGCCTACGCCTGGAAC
CACAGCACAGTAAAGCCACATTCATATCCTCCTCCTCGGCCTCATCGTCC
TCATCCCAAACAGCTGAGACCACGCTGATTGAGACAGCTGAGAAGTCGCC
AGCCAGTGAAGCAGCTGCTGGAACAGTGACAACGACATCGCCGCAGCATT
TCTTCCATCATCATCATCCGCCGGCTCATCCGCATCCGCCCCGCCAGCAG
CCGCATCCGCATAGCCACTCGCATCCGCATCCGCATCCGCAACTCCAGCG
CCGCCCGGTGGAGCAGCTGCATCTGCTGCATAGCCACCACGATGTCCAGG
AGCTGTCCGGACAGGAGCATCCACATCCGCAACCCGGCTCGCATCCGCAT
CCGCACCATCTGCGCTCGCCCAGCTCCGAGGAGGATAATTCGCCCACAGA
AATGAATAATTGCCGTCGTTTGGTGGATAAGCCGCCGCTGGTGAAACGCC
TGACCATGGGCATTGGACTGCTGCGGGGAACCGAGGACAGCCGCCCCCTG
ATGCACAGCACCTGCGGCTCCTCGCTGACCTCCGGATCCGGCTGTGGATC
CACTCAGACCATCTCCGATGGCTATGTGAACGAGGCCATCTGCGAGCCGG
ACAAGTACGTGGCCAGCAAGTTCGGCGACTCCTGCCGCCAGTCACTGTCC
GCACTGGAGAGTGCCACCCAGCGGCTGCAGGTGGAGCTGCCCGCCGCCAG
CAAAAAGTATCTGAGAGAGACGTGCAGCGCCAACTCCAGTCCGAAATTGT
TTCCCGGCCACAGTGCCCTGCGCCTGGATAATCTCAGCCTAGCCGAGCAG
CAGGAGCTTAAGGGAGCCGCCTGGTTTCAAGCGGGCATTCCCAGGGAAAT
ATCCCTGGAGGCCCTGTCCCGACAGAGTCCAGGTGCGTTTCTAGTGCGCC
AGAGCAGCACAAAGCCGGGATGTTTCGCCCTCTCGCTGCGAGTGCCACCA
CCTTCACCACGAGTGGCCCACTATCTGATCCTGCGGACGCAAAGGGGCTA
CAAGATAAAGGGCTTCACCAAGGAGTTCAGTTCGCTGAAGGCGCTGATCA
CGCACCACTCGGTGATGCCGGAACTGTTGCCCGTGCCGCTGACCCTGCCA
CGCCCACCTAGTACCCGATCGCAACGATCGCAGGGCGCCTACGCAGGCGG
AACCGGAAACGGGGGAGCGGACTTCGAGATGTATGGCTCGCTGAACGACT
TTCGCAAAATGATGGCCGATTTGAATGTGGCAAGCTTTCTAGACCAT
BO16470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 1266 | CG33993-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG33993-RB | 777 | CG33993-PB | 1..774 | 506..1279 | 3870 | 100 | Plus |
PVRAP-RA | 1425 | CG32406-PA | 1006..1307 | 854..1152 | 260 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-RA | 2404 | CG33993-RA | 405..1667 | 17..1279 | 6315 | 100 | Plus |
CG33993-RB | 1316 | CG33993-RB | 118..908 | 489..1279 | 3955 | 100 | Plus |
PVRAP-RA | 2919 | CG32406-RA | 1810..2111 | 854..1152 | 260 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5937397..5937735 | 492..154 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5934405..5934694 | 779..490 | 1450 | 100 | Minus |
3L | 28110227 | 3L | 5934053..5934335 | 1061..779 | 1415 | 100 | Minus |
3L | 28110227 | 3L | 5933773..5933993 | 1279..1059 | 1105 | 100 | Minus |
3L | 28110227 | 3L | 5937829..5937968 | 156..17 | 700 | 100 | Minus |
3L | 28110227 | 3L | 6025442..6025509 | 1085..1152 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:35:55 has no hits.
BO16470.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:10 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 1..1266 | 17..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:51 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 390..1672 | 6..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:12 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 405..1667 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:10 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 390..1672 | 6..1286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:29 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33993-RA | 405..1667 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:29 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5937399..5937732 | 157..490 | 100 | <- | Minus |
3L | 5934405..5934693 | 491..779 | 100 | <- | Minus |
3L | 5937829..5937968 | 17..156 | 100 | | Minus |
3L | 5933769..5933991 | 1061..1281 | 99 | <- | Minus |
3L | 5934054..5934334 | 780..1060 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:12 Download gff for
BO16470.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5926869..5927091 | 1061..1281 | 99 | <- | Minus |
arm_3L | 5927154..5927434 | 780..1060 | 100 | <- | Minus |
arm_3L | 5927505..5927793 | 491..779 | 100 | <- | Minus |
arm_3L | 5930499..5930832 | 157..490 | 100 | <- | Minus |
arm_3L | 5930929..5931068 | 17..156 | 100 | | Minus |
BO16470.pep Sequence
Translation from 16 to 1297
> BO16470.pep
MIMQDIRLRLEPQHSKATFISSSSASSSSSQTAETTLIETAEKSPASEAA
AGTVTTTSPQHFFHHHHPPAHPHPPRQQPHPHSHSHPHPHPQLQRRPVEQ
LHLLHSHHDVQELSGQEHPHPQPGSHPHPHHLRSPSSEEDNSPTEMNNCR
RLVDKPPLVKRLTMGIGLLRGTEDSRPLMHSTCGSSLTSGSGCGSTQTIS
DGYVNEAICEPDKYVASKFGDSCRQSLSALESATQRLQVELPAASKKYLR
ETCSANSSPKLFPGHSALRLDNLSLAEQQELKGAAWFQAGIPREISLEAL
SRQSPGAFLVRQSSTKPGCFALSLRVPPPSPRVAHYLILRTQRGYKIKGF
TKEFSSLKALITHHSVMPELLPVPLTLPRPPSTRSQRSQGAYAGGTGNGG
ADFEMYGSLNDFRKMMADLNVASFLDH
BO16470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33993-PA | 421 | CG33993-PA | 1..421 | 1..421 | 2228 | 100 | Plus |
CG33993-PB | 258 | CG33993-PB | 1..258 | 164..421 | 1330 | 100 | Plus |
PVRAP-PA | 474 | CG32406-PA | 183..468 | 133..421 | 686 | 51.9 | Plus |
CG10479-PA | 378 | CG10479-PA | 240..340 | 277..379 | 189 | 44.2 | Plus |
CG10479-PB | 379 | CG10479-PB | 241..341 | 277..379 | 189 | 44.2 | Plus |