Clone Sequence Records
BO16471.3prime Sequence
691 bp (567 high quality bases) assembled on 2006-10-13
> BO16471.3prime
ATGGTCTAGAAAGCTTGCGCAATTCGGGCATTTAATCAGCCCGACTTCAT
CGCAATTCATGCATTTTAGTGCCACAAACTCCGCCGTAAAGTGATTCCGG
TGCATTGACTTCTTGGAACCGTTGCACGCGGGGCACGGCAGCATGCGATA
TCCGCCGCAAGTTTGGCACGTATACGCCGTGGCAATCGATTTATACGGTC
TCAACAGCTGTCGCAGCTCACCACTTTCATTCAGACGCTCAACGATATTG
GCATCCCCGATGAGCTGACCCTCGACGAAGAGCTGTGGCACCCGGATGGT
CTCGTCCTGCATCCTTTCGCGCATTTCCTGCTGATACTCCACGCTCATAA
AAATGTCCCTCTCCTCGAATTTAATTAGCAGTGTGCGCAGAATCTTTTTA
ACATTGGCACACTTGGCATATGTGTCCCTGATGATGCCCATGCTGGTGGT
GTACAAAACCACTTTGCCCACATCCTTCTCCATATAGTTCTTGACATTGG
GCTGTTGCAGTTGCAAGAAGGTGGCTACTCCATTGCGCACACGATTCTTG
ACGCCCCGTACGGTTCCCTTGACGGATTTAATTGTAGAATTGCCGGCGAG
CTTGCCCGCCCGTCGAATGTCACGAAAGCCAACAAAATCCTCACCCGGCT
GCTCATCCGTAAAGTGCTGCGCTTCGTATTCCGTCGAGGAA
BO16471.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-PA | 1749 | CG12206-RA | 1074..1746 | 691..19 | 3290 | 99.5 | Minus |
| CG12206-PB | 1749 | CG12206-RB | 1074..1746 | 691..19 | 3290 | 99.5 | Minus |
| CG12206-PC | 1749 | CG12206-RC | 1074..1746 | 691..19 | 3290 | 99.5 | Minus |
| CG31559-PA | 1365 | CG31559-RA | 807..866 | 571..512 | 175 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-RC | 2348 | CG12206-RC | 1376..2048 | 691..19 | 3320 | 99.6 | Minus |
| CG12206-RB | 2653 | CG12206-RB | 1681..2353 | 691..19 | 3320 | 99.6 | Minus |
| CG12206-RA | 2416 | CG12206-RA | 1444..2116 | 691..19 | 3320 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3466398..3466634 | 255..491 | 1185 | 100 | Plus |
| X | 23542271 | X | 3471874..3472075 | 490..691 | 965 | 98.5 | Plus |
| X | 23542271 | X | 3466037..3466207 | 19..189 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 6150578..6151050 | 19..491 | 745 | 77.2 | Plus |
| X | 23542271 | X | 3466270..3466336 | 190..256 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 6156180..6156250 | 501..571 | 235 | 88.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 16:25:26 has no hits.
BO16471.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:02 Download gff for
BO16471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-PC | 1076..1749 | 16..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:31:01 Download gff for
BO16471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 1444..2116 | 19..691 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:01:03 Download gff for
BO16471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 1444..2116 | 19..691 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:01:03 Download gff for
BO16471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3466037..3466207 | 19..189 | 100 | <- | Plus |
| X | 3466270..3466335 | 190..255 | 100 | <- | Plus |
| X | 3466399..3466632 | 256..489 | 100 | <- | Plus |
| X | 3471874..3472075 | 490..691 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:31:01 Download gff for
BO16471.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3360070..3360240 | 19..189 | 100 | <- | Plus |
| arm_X | 3360303..3360368 | 190..255 | 100 | <- | Plus |
| arm_X | 3360432..3360665 | 256..489 | 100 | <- | Plus |
| arm_X | 3365907..3366108 | 490..691 | 98 | | Plus |
BO16471.5prime Sequence
724 bp (593 high quality bases) assembled on 2006-10-13
> BO16471.5prime
GAAGTTATCAGTCGACATGGCGGCAATTACTAGCAATGTGTCGCGATTGG
AGCCAATGCGCGGTATTTCCATAATCATTGAATCGCCAGAAGTGGCAACG
GCAACACCACCACCAGCAACAACAACCGCAACTGCCGAAGCAGAAGCCGC
AACAAAACAAGTAGCACCAACTGCCAAGAGCAACAGCAACACTGAAATGT
CGCTCAAGTCACAGGCTGCTGGCATGTTGCTGGCATTTGGCGACACAGCA
GCAACAGCCAAAGATAATTTGGAAACTAGTTACGACACTGCAGCAAAGTC
GACAGCAGCACCAGAGACCAACAAAATCTATCCGCAGTTACTGTTGCGCA
TTGGCGGAGAAATTGCCGGTGCAACAGCATCAGCAGAAGCAGCAGCATCA
GCAGCAACAGCAGCAGCAGCAACAGCAACATCACCGACCATAATCAGCTG
CAATGGTGAAATTGCCGCCAGTCAAGCAGCAGCAACAGCAGCGGACACAG
CGGCAACATTGCAACACAACAATACGGTGAAGATTCAAATCGAAAGCCAG
GGTCAGCAGCGAACACTGGGCAAGCAGATAAGTGTGGTGAAGCTGAACGA
GGGCGTGAAGGAGATGCAGCAGCACATGTGCTATTTGGTGGACACCAGTG
GCCAGTACTCGCCCTGCGAGACCTTGGACAGTGGCACGGGCAGCGATCTG
GAGAATCATCCGCAGCAGCAGCAG
BO16471.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-PA | 1749 | CG12206-RA | 1..708 | 17..724 | 3515 | 99.8 | Plus |
| CG12206-PB | 1749 | CG12206-RB | 1..708 | 17..724 | 3515 | 99.8 | Plus |
| CG12206-PC | 1749 | CG12206-RC | 1..708 | 17..724 | 3515 | 99.8 | Plus |
| CG3992-PB | 3750 | srp-RB | 1636..1672 | 399..435 | 135 | 94.5 | Plus |
| CG3992-PA | 3795 | srp-RA | 1636..1672 | 399..435 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-RC | 2348 | CG12206-RC | 302..1010 | 16..724 | 3530 | 99.9 | Plus |
| CG12206-RB | 2653 | CG12206-RB | 607..1315 | 16..724 | 3530 | 99.9 | Plus |
| CG12206-RA | 2416 | CG12206-RA | 370..1078 | 16..724 | 3530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3472441..3473149 | 724..16 | 3530 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-10 22:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2762 | 94..526 | 394 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6921 | 371..565 | 323 | 66.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2627 | 371..648 | 313 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 288..492 | 307 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2869 | 96..521 | 305 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6921 | 251..524 | 302 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6942 | 397..624 | 288 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6864 | 374..519 | 281 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2517 | 371..566 | 276 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2623 | 246..508 | 276 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2527 | 295..521 | 266 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2685 | 87..435 | 257 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2482 | 395..572 | 255 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2951 | 87..573 | 251 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..7221 | 87..545 | 250 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7007 | 95..312 | 248 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7032 | 246..521 | 242 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6828 | 86..191 | 237 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6643..7180 | 23..577 | 215 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1159 | 406..509 | 196 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2809 | 96..521 | 188 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1149 | 102..191 | 187 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..3031 | 96..487 | 185 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2889 | 88..190 | 178 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6996 | 87..256 | 174 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1091..1158 | 87..154 | 169 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1596 | 87..197 | 168 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6822 | 407..521 | 164 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2401 | 425..521 | 157 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1173 | 475..545 | 136 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1025..1146 | 385..508 | 134 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..6947 | 87..177 | 133 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1173 | 87..145 | 133 | 69.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 510..568 | 96..154 | 133 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1587 | 69..141 | 126 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6856 | 475..577 | 123 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1613 | 96..179 | 119 | 65.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 499..561 | 73..135 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 464..516 | 116 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1125 | 475..508 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8026 | 99..182 | 114 | 59.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9470 | 99..182 | 114 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1608 | 473..525 | 112 | 67.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2074 | 111..173 | 108 | 63.5 | Plus |
BO16471.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:03 Download gff for
BO16471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-PC | 1..708 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:41 Download gff for
BO16471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 364..1078 | 9..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:32 Download gff for
BO16471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 364..1078 | 9..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:32 Download gff for
BO16471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3472441..3473155 | 9..724 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:41 Download gff for
BO16471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3366474..3367188 | 9..724 | 99 | | Minus |
BO16471.complete Sequence
1780 bp assembled on 2008-11-10
GenBank Submission: KX795101
> BO16471.complete
GAAGTTATCAGTCGACATGGCGGCAATTACTAGCAATGTGTCGCGATTGG
AGCCAATGCGCGGTATTTCCATAATCATTGAATCGCCAGAAGTGGCAACG
GCAACACCACCACCAGCAACAACAACCGCAACTGCCGAAGCAGAAGCCGC
AACAAAACAAGTAGCACCAACTGCCAAGAGCAACAGCAACACTGAAATGT
CGCTCAAGTCACAGGCTGCTGGCATGTTGCTGGCATTTGGCGACACAGCA
GCAACAGCCAAAGATAATTTGGAAACTAGTTACGACACTGCAGCAAAGTC
GACAGCAGCACCAGAGACCAACAAAATCTATCCGCAGTTACTGTTGCGCA
TTGGCGGAGAAATTGCCGGTGCAACAGCATCAGCAGAAGCAGCAGCATCA
GCAGCAACAGCAGCAGCAGCAACAGCAACATCACCGACCATAATCAGCTG
CAATGGTGAAATTGCCGCCAGTCAAGCAGCAGCAACAGCAGCGGACACAG
CGGCAACATTGCAACACAACAATACGGTGAAGATTCAAATCGAAAGCCAG
GGTCAGCAGCGAACACTGGGCAAGCAGATAAGTGTGGTGAAGCTGAACGA
GGGCGTGGAGGAGATGCAGCAGCACATGTGCTATTTGGTGGACACCAGTG
GCCAGTACTCGCCCTGCGAGACCTTGGACAGTGGCACGGGCAGCGATCTG
GAGAATCATCCGCAGCAGCAGCAGCAGCCGCAACAGGTGAGATCACCGCA
ACTGGAGCTTCATCTGCAGACCACGCGGCTGATGGTCAACGAGGAGGCGG
ACCATAAGCACAGCCCGCTGGAGACGCCGAGTCCCGTTCCGAAGCGAGCA
TATAGCCTCACCGATGACAGCGAGGAATGCGATGAGAGCAGCAACTCATC
GCTAAGCTGCGATTCCCTGCACTCTGGTGGCCTGCTGCCCACTACCCTGC
TGCGGGATATTCGATTCAGGGAACGAGCGTCCGGTCCTCTGGTCACCAAA
ATCAATGGCAGACCATTGCAATTCGAAACGGATGGCTATTACACATTCCA
TGTGCGCGAACACGAGAATTTCCGGAGTTTTGGTTCCAATTCCTCGACGG
AATACGAAGCGCAGCACTTTACGGATGAGCAGCCGGGTGAGGATTTTGTT
GGCTTTCGTGACATTCGAACGGCGGGCAAGCTCGCCGGCAATTCTACAAT
TAAATCCGCCAAGGGAACCGTACGGGGCGTCAAGAATCGTGTGCGCAATG
GAGTAGCCACCTTCTTGCAACTGCAACAGCCCAATGTCAAGAACTATATG
GAGAAGGATGTGGGCAAAGTGGTTTTGTACACCACCAGCATGGGCATCAT
CAGGGACACATATGCCAAGTGTGCCAATGTTAAAAAGATTCTGCGCACAC
TGCTAATTAAATTCGAGGAGAGGGACATTTTTATGAGCGTGGAGTATCAG
CAGGAAATGCGCGAAAGGATGCAGGACGAGACCATCCGGGTGCCACAGCT
CTTCGTCGAGGGTCAGCTCATCGGGGATGCCAATATCGTTGAGCGTCTGA
ATGAAAGTGGTGAGCTGCGACAGCTGTTGAGACCGTATAAATCGATTGCC
ACGGCGTATACGTGCCAAACTTGCGGCGGATATCGCATGCTGCCGTGCCC
CGCGTGCAACGGTTCCAAGAAGTCAATGCACCGGAATCACTTTACGGCGG
AGTTTGTGGCACTAAAATGCATGAATTGCGATGAAGTCGGGCTGATTAAA
TGCCCGAATTGCGCAAGCTTTCTAGACCAT
BO16471.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-RC | 1749 | CG12206-PC | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| CG12206-RB | 1749 | CG12206-PB | 1..1746 | 17..1762 | 8730 | 100 | Plus |
| CG12206-RA | 1749 | CG12206-PA | 1..1746 | 17..1762 | 8730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-RC | 2348 | CG12206-RC | 302..2048 | 16..1762 | 8735 | 100 | Plus |
| CG12206-RB | 2653 | CG12206-RB | 607..2353 | 16..1762 | 8735 | 100 | Plus |
| CG12206-RA | 2416 | CG12206-RA | 370..2116 | 16..1762 | 8735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3471874..3473149 | 1291..16 | 6380 | 100 | Minus |
| X | 23542271 | X | 3466398..3466634 | 1526..1290 | 1185 | 100 | Minus |
| X | 23542271 | X | 3466037..3466207 | 1762..1592 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 6150578..6151050 | 1762..1290 | 745 | 77.2 | Minus |
| X | 23542271 | X | 3466270..3466336 | 1591..1525 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 6156180..6156256 | 1280..1204 | 250 | 88.3 | Minus |
Blast to na_te.dros performed 2014-11-27 13:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2982 | 94..752 | 421 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6921 | 371..565 | 323 | 66.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 288..492 | 307 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2869 | 96..521 | 305 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2627 | 371..648 | 304 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6921 | 251..524 | 302 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6942 | 397..624 | 288 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2886 | 246..764 | 285 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6864 | 374..519 | 281 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2517 | 371..566 | 276 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2527 | 295..521 | 266 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2482 | 395..572 | 255 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2951 | 87..573 | 251 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..7221 | 87..545 | 250 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7007 | 95..312 | 248 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7032 | 246..521 | 242 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6828 | 86..191 | 237 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6643..7180 | 23..577 | 215 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1159 | 406..509 | 196 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2809 | 96..521 | 188 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1149 | 102..191 | 187 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..3031 | 96..487 | 185 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2889 | 88..190 | 178 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6996 | 87..256 | 174 | 60.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1091..1158 | 87..154 | 169 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1596 | 87..197 | 168 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6822 | 407..521 | 164 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2401 | 425..521 | 157 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1173 | 475..545 | 136 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1025..1146 | 385..508 | 134 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..6947 | 87..177 | 133 | 62.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1115..1173 | 87..145 | 133 | 69.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 510..568 | 96..154 | 133 | 69.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1587 | 69..141 | 126 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6856 | 475..577 | 123 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1613 | 96..179 | 119 | 65.6 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 499..561 | 73..135 | 117 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 464..516 | 116 | 71.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1092..1125 | 475..508 | 116 | 82.4 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8026 | 99..182 | 114 | 59.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9470 | 99..182 | 114 | 59.5 | Plus |
BO16471.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:24 Download gff for
BO16471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RC | 296..2048 | 9..1762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:30:40 Download gff for
BO16471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 371..2116 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:08 Download gff for
BO16471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RC | 303..2048 | 17..1764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:18 Download gff for
BO16471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12206-RA | 371..2116 | 17..1764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:18 Download gff for
BO16471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3466270..3466335 | 1526..1591 | 100 | <- | Minus |
| X | 3466399..3466632 | 1292..1525 | 100 | <- | Minus |
| X | 3466034..3466207 | 1592..1764 | 98 | <- | Minus |
| X | 3471874..3473148 | 17..1291 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:30:40 Download gff for
BO16471.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3360067..3360240 | 1592..1764 | 98 | <- | Minus |
| arm_X | 3360303..3360368 | 1526..1591 | 100 | <- | Minus |
| arm_X | 3360432..3360665 | 1292..1525 | 100 | <- | Minus |
| arm_X | 3365907..3367181 | 17..1291 | 100 | | Minus |
BO16471.pep Sequence
Translation from 16 to 1780
> BO16471.pep
MAAITSNVSRLEPMRGISIIIESPEVATATPPPATTTATAEAEAATKQVA
PTAKSNSNTEMSLKSQAAGMLLAFGDTAATAKDNLETSYDTAAKSTAAPE
TNKIYPQLLLRIGGEIAGATASAEAAASAATAAAATATSPTIISCNGEIA
ASQAAATAADTAATLQHNNTVKIQIESQGQQRTLGKQISVVKLNEGVEEM
QQHMCYLVDTSGQYSPCETLDSGTGSDLENHPQQQQQPQQVRSPQLELHL
QTTRLMVNEEADHKHSPLETPSPVPKRAYSLTDDSEECDESSNSSLSCDS
LHSGGLLPTTLLRDIRFRERASGPLVTKINGRPLQFETDGYYTFHVREHE
NFRSFGSNSSTEYEAQHFTDEQPGEDFVGFRDIRTAGKLAGNSTIKSAKG
TVRGVKNRVRNGVATFLQLQQPNVKNYMEKDVGKVVLYTTSMGIIRDTYA
KCANVKKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQLFVEGQ
LIGDANIVERLNESGELRQLLRPYKSIATAYTCQTCGGYRMLPCPACNGS
KKSMHRNHFTAEFVALKCMNCDEVGLIKCPNCASFLDH
BO16471.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12206-PC | 582 | CG12206-PC | 1..582 | 1..582 | 2978 | 100 | Plus |
| CG12206-PB | 582 | CG12206-PB | 1..582 | 1..582 | 2978 | 100 | Plus |
| CG12206-PA | 582 | CG12206-PA | 1..582 | 1..582 | 2978 | 100 | Plus |
| CG31559-PA | 454 | CG31559-PA | 19..454 | 208..582 | 950 | 48.3 | Plus |
