Clone Sequence Records
BO16481.3prime Sequence
749 bp (682 high quality bases) assembled on 2006-10-13
> BO16481.3prime
ATGGTCTAGAAAGCTTGCCTTGCTCTGCTCGAATCGCTGTGTCAGCGATG
CAATGTTGGACTTTGGCGCCGCCGCCAATGTTGCCGCCTTTACAGTGGGT
GGCGTGGGCGCTGCTCCGCCATTCGCCCGCTTTCCCAGTACTCCTCCCGC
TCCACCGCCGCTGAAGGATGGCTTTGCTGACAGTGGTTTGGGCTTTTGAA
TGGTGGCCGATGGCGCTGTGGTGGACGCTCCAGCCGTTCCATTGGGCAGT
GTTTTCGTTGTGCTCTTCATAAAGGATTTGGGACGGGCGTAATTGGTTAC
GCCGCTCATGCTGCCGCTGCTGCTCCGTTTGGCCAGCTGGACTACTGGCG
CTGGCTGCGACTGACCGACGTTTCCCCCCGCCGCCGGCTTGAAGCTGGAC
ATGCTGGGCTGCGCCTGCGCCTGCGCCTGTGATTTGTCCGCCACAGTGGG
CTTAACCCGAGCCACGGGAGCATTGGCTGGCGGCGGGCGGTGATATGTGC
TTGCAGATGCATTAGCTGCCTTTTCCTCCAGCACACTGCTCGCTGGCTTG
GGTGGAGCAGGTCGCTGGGGACTTTTTGGGGGATCTGCGGGTGTTGGTTG
AGCTGCTGATGCTGCTGCAGCAACGGGCTTTCCTGAGTATATGGAATCCC
CGTTGATCTTTTCTAGTTCATTCACTATTTCATTTAGCAAACCCATATCG
CTGCCATTACTCGCCCTGTTGGCCACCAAATCGCTCCGCTTGAGGGTCT
BO16481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7649-PB | 4224 | Neu3-RB | 3491..4221 | 749..19 | 3655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Meltrin-RC | 5841 | CG7649-RC | 4178..4908 | 749..19 | 3655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14665840..14666570 | 19..749 | 3655 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 18:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6854..6909 | 635..577 | 108 | 67.8 | Minus |
BO16481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:10 Download gff for
BO16481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7649-PB | 3491..4224 | 18..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:27:03 Download gff for
BO16481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Meltrin-RC | 4221..4954 | 18..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:44:41 Download gff for
BO16481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Meltrin-RC | 4178..4908 | 19..749 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:44:41 Download gff for
BO16481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14665840..14666570 | 19..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:27:03 Download gff for
BO16481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10491562..10492292 | 19..749 | 100 | | Plus |
BO16481.5prime Sequence
642 bp (641 high quality bases) assembled on 2006-10-13
> BO16481.5prime
GAAGTTATCAGTCGACATGGATTCGGCACTATTAAAATCACCAAGCGACT
CCACACCGTCAGCTGGACTTTTTGGAAAATTCGATGGCTTCACTCTGCGA
CCGCTGAACGATGCATCTTCACCAGCGAGCAACTACAACGGACCAAATGT
GGCCTTTGTGCAACCCACTGTGCAGCAGGATGGACCGCAGCGAATGGCCC
CACCACCCCCAGTAGTAAAACCAGGAACGGCTCCCATTCATCCCCCATCC
CCGAAACCAGAAGCTACTTGGGTGAGGCCAGCGCCCGCTTTGCCACCACC
CAATCCTGGCTCAACGGCACGTCCCATTATCTCACCACCCAAACTGGATT
CTAGTACATTAACTATGGTACCACTCAAGGACAGCACAGAGGATCTCTCG
CCCAGTCGATCTGCTCCTCCAGTTCCTCTACACGCTGATCCCAAGCTAAA
TGTTAAACGAGATGGTACCATTCGTCGATTTGCTTCGTTTCTGAAAAAGG
AAGAGAAACCGCCACTAAAAGAGAAGACCTACATCGATCGGGAGCGGCTG
CGAACTCTGGAAATTTCTGCCCCTATGCCTGTGCCCGCTGCTCCCCAAGC
TGAATCATCCAATTCCGATTCGGAGACCACTCCACGCGAAGA
BO16481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7649-PB | 4224 | Neu3-RB | 2518..3143 | 17..642 | 3105 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Meltrin-RC | 5841 | CG7649-RC | 3205..3830 | 17..642 | 3115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14666918..14667543 | 642..17 | 3115 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:51:03 has no hits.
BO16481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:10 Download gff for
BO16481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7649-PB | 2508..3142 | 6..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:17:48 Download gff for
BO16481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Meltrin-RC | 3238..3872 | 6..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:54 Download gff for
BO16481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Meltrin-RC | 3195..3829 | 6..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:54 Download gff for
BO16481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14666919..14667553 | 6..641 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:17:48 Download gff for
BO16481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10492641..10493275 | 6..641 | 99 | | Minus |
BO16481.complete Sequence
1738 bp assembled on 2009-08-24
> BO16481.complete
GAAGTTATCAGTCGACATGGATTCGGCACTATTAAAATCACCAAGCGACT
CCACACCGTCAGCTGGACTTTTTGGAAAATTCGATGGCTTCACTCTGCGA
CCGCTGAACGATGCATCTTCACCAGCGAGCAACTACAACGGACCAAATGT
GGCCTTTGTGCAACCCACTGTGCAGCAGGATGGACCGCAGCGAATGGCCC
CACCACCCCCAGTAGTAAAACCAGGAACGGCTCCCATTCATCCCCCATCC
CCGAAACCAGAAGCTACTTGGGTGAGGCCAGCGCCCGCTTTGCCACCACC
CAATCCTGGCTCAACGGCACGTCCCATTATCTCACCACCCAAACTGGATT
CTAGTACATTAACTATGGTACCACTCAAGGACAGCACAGAGGATCTCTCG
CCCAGTCGATCTGCTCCTCCAGTTCCTCTACACGCTGATCCCAAGCTAAA
TGTTAAACGAGATGGTACCATTCGTCGATTTGCTTCGTTTCTGAAAAAGG
AAGAGAAACCGCCACTAAAAGAGAAGACCTACATCGATCGGGAGCGGCTG
CGAACTCTGGAAATTTCTGCCCCTATGCCTGTGCCCGCTGCTCCCCAAGC
TGAATCATCCAATTCCGATTCGGAGACCACTCCACGCGAAGAGGAAACCC
AGAATCTGGTAAAACGCGCACAATCCATGCGTTCGCCCACCAAAAAGGCT
CCACTCCAGAGTTTTGGATCCATGCGTTCTCCACCGGGACTGCCACGGCC
GAAGAGTGGTCAGGTGAATAGCAATGGCGCCTCGAGACCAAAGTCGCCAC
CTCCAAGGCCACCGCCAGTGGTGGTCAAGAAAACAAACTCCATCAGTTCA
TCGGGCTATCAGCGGCCGGTTTCCACTGCCCAGAGATCTGTGGAGAATAC
CTATGACGATTGCGAATTTGTGGAGAATGAAGTGCGAGCCTCGAACGACG
ACATTTACTCCGTAATTGATGAGATTCCGCCAGCGGCACAGACCCTCAAG
CGGAGCGATTTGGTGGCCAACAGGGCGAGTAATGGCAGCGATATGGGTTT
GCTAAATGAAATAGTGAATGAACTAGAAAAGATCAACGGGGATTCCATAT
ACTCAGGAAAGCCCGTTGCTGCAGCAGCATCAGCAGCTCAACCAACACCC
GCAGATCCCCCAAAAAGTCCCCAGCGACCTGCTCCACCCAAGCCAGCGAG
CAGTGTGCTGGAGGAAAAGGCAGCTAATGCATCTGCAAGCACATATCACC
GCCCGCCGCCAGCCAATGCTCCCGTGGCTCGGGTTAAGCCCACTGTGGCG
GACAAATCACAGGCGCAGGCGCAGGCGCAGCCCAGCATGTCCAGCTTCAA
GCCGGCGGCGGGGGGAAACGTCGGTCAGTCGCAGCCAGCGCCAGTAGTCC
AGCTGGCCAAACGGAGCAGCAGCGGCAGCATGAGCGGCGTAACCAATTAC
GCCCGTCCCAAATCCTTTATGAAGAGCACAACGAAAACACTGCCCAATGG
AACGGCTGGAGCGTCCACCACAGCGCCATCGGCCACCATTCAAAAGCCCA
AACCACTGTCAGCAAAGCCATCCTTCAGCGGCGGTGGAGCGGGAGGAGTA
CTGGGAAAGCGGGCGAATGGCGGAGCAGCGCCCACGCCACCCACTGTAAA
GGCGGCAACATTGGCGGCGGCGCCAAAGTCCAACATTGCATCGCTGACAC
AGCGATTCGAGCAGAGCAAGGCAAGCTTTCTAGACCAT
BO16481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Meltrin-RC | 4224 | CG7649-PC | 2518..4221 | 17..1720 | 8505 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Meltrin-RC | 5841 | CG7649-RC | 3205..4908 | 17..1720 | 8505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14665840..14667543 | 1720..17 | 8505 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-28 01:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS3 | 1790 | BS3 BS3 1790bp | 1529..1570 | 668..710 | 122 | 79.1 | Plus |
BO16481.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:33 Download gff for
BO16481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Neu3-RB | 3248..4951 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:08 Download gff for
BO16481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Meltrin-RC | 3248..4951 | 17..1722 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:40 Download gff for
BO16481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Meltrin-RC | 3205..4908 | 17..1722 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:40 Download gff for
BO16481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14665838..14667543 | 17..1722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:08 Download gff for
BO16481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10491560..10493265 | 17..1722 | 99 | | Minus |
BO16481.pep Sequence
Translation from 16 to 1738
> BO16481.pep
MDSALLKSPSDSTPSAGLFGKFDGFTLRPLNDASSPASNYNGPNVAFVQP
TVQQDGPQRMAPPPPVVKPGTAPIHPPSPKPEATWVRPAPALPPPNPGST
ARPIISPPKLDSSTLTMVPLKDSTEDLSPSRSAPPVPLHADPKLNVKRDG
TIRRFASFLKKEEKPPLKEKTYIDRERLRTLEISAPMPVPAAPQAESSNS
DSETTPREEETQNLVKRAQSMRSPTKKAPLQSFGSMRSPPGLPRPKSGQV
NSNGASRPKSPPPRPPPVVVKKTNSISSSGYQRPVSTAQRSVENTYDDCE
FVENEVRASNDDIYSVIDEIPPAAQTLKRSDLVANRASNGSDMGLLNEIV
NELEKINGDSIYSGKPVAAAASAAQPTPADPPKSPQRPAPPKPASSVLEE
KAANASASTYHRPPPANAPVARVKPTVADKSQAQAQAQPSMSSFKPAAGG
NVGQSQPAPVVQLAKRSSSGSMSGVTNYARPKSFMKSTTKTLPNGTAGAS
TTAPSATIQKPKPLSAKPSFSGGGAGGVLGKRANGGAAPTPPTVKAATLA
AAPKSNIASLTQRFEQSKASFLDH
BO16481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Meltrin-PC | 1407 | CG7649-PC | 840..1407 | 1..568 | 2918 | 100 | Plus |
CG11835-PD | 795 | CG11835-PD | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PC | 795 | CG11835-PC | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PB | 795 | CG11835-PB | 258..770 | 34..555 | 186 | 24 | Plus |
CG11835-PA | 795 | CG11835-PA | 258..770 | 34..555 | 186 | 24 | Plus |