Clone Sequence Records
BO16483.3prime Sequence
817 bp (679 high quality bases) assembled on 2006-10-13
> BO16483.3prime
ATGGTCTAGAAAGCTTGCTTCATCCCAGAGGCACTGTTGTTTCTGCCGCA
CATAATAGGTGAACTGTGTGCACTTGCGGCAGGTCTTGATGCCGCAGCGA
TAATTCGTCGGCTGTGCCTGCTGCTGGGCGCCCGACGAGTCCGCTCCGGC
GACTCCCTTGCCCTTGCAGTACTTGAGCCCGCAGGGATACCAGCCGATGC
AGGTCTCCAGGTTGCACAGGCAGGGCGCCCACAGGCTGCTCACCTCGTTG
CAGCGCGTCGAGAGCGTGTCCGGGAACTTTTCCGTGGCGGCCTCCAGGCT
GGAAATCGAGGAGCCTGGTAGCTCCGCCCAAGCTTTAAGGTCCACATCCC
GGACATAGGTGGCGTCCATGGCCTCGGCGCAGAGTCCCTGCAGATGTCTG
GTGATGGGCAGCGAGCGGTTGAGCTGTACCCAGCTGCTCATGGTGAAGGT
CTCACGGCCCTTGTCCTCCTCGGGAGTGCGGATGGTGTGCGGATTCTTCT
GGCGCAGCTTGGCCATTGCCGCCGAGGAGATGAAGTCGCCCTTGTTGAAC
TTGGTTGCGAAGCACATGACCTGGTACTGGCTCTGGCCACGCTCCTCCTC
GCCGAGAACCAGAGCCTTGAGGATTTGAACCTCATTGCGAAAGTCGATGA
CCTGAGTGATGAGCGTTCCGTCGGTCTTCTGAAACTCCAGCGTTATCAGG
TCCTCGCCAATGTTGGAGGTAATACTCTCCTGGATCACCTCGCCGCCCTG
ATTTTGGACGTTAATGAGCAGCTGGGAGTGGGCGAATGCGTCCGCGTTCA
TCACTAAGTTGCACAGC
BO16483.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9884-PA | 999 | oaf-RA | 198..996 | 817..19 | 3945 | 99.7 | Minus |
CG9884-PB | 999 | oaf-RB | 198..996 | 817..19 | 3945 | 99.7 | Minus |
CG9884-PC | 999 | oaf-RC | 198..996 | 817..19 | 3945 | 99.7 | Minus |
CG9884-PD | 1464 | oaf-RD | 198..996 | 817..19 | 3945 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 3223 | CG9884-RD | 273..1071 | 817..19 | 3965 | 99.7 | Minus |
oaf-RC | 1734 | CG9884-RC | 273..1071 | 817..19 | 3965 | 99.7 | Minus |
oaf-RB | 2831 | CG9884-RB | 273..1071 | 817..19 | 3965 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2495570..2495889 | 633..314 | 1600 | 100 | Minus |
2L | 23513712 | 2L | 2496396..2496694 | 317..19 | 1480 | 99.7 | Minus |
2L | 23513712 | 2L | 2495371..2495488 | 750..633 | 575 | 99.2 | Minus |
2L | 23513712 | 2L | 2493227..2493297 | 817..747 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:40:33 has no hits.
BO16483.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:13 Download gff for
BO16483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9884-PD | 198..996 | 19..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:00 Download gff for
BO16483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 273..1071 | 19..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:23 Download gff for
BO16483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 273..1071 | 19..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:23 Download gff for
BO16483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2495374..2495487 | 634..747 | 99 | -> | Minus |
2L | 2493227..2493296 | 748..817 | 100 | -> | Minus |
2L | 2495570..2495888 | 315..633 | 100 | -> | Minus |
2L | 2496399..2496694 | 19..314 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:00 Download gff for
BO16483.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2493227..2493296 | 748..817 | 100 | -> | Minus |
arm_2L | 2495374..2495487 | 634..747 | 99 | -> | Minus |
arm_2L | 2495570..2495888 | 315..633 | 100 | -> | Minus |
arm_2L | 2496399..2496694 | 19..314 | 99 | | Minus |
BO16483.5prime Sequence
832 bp (698 high quality bases) assembled on 2006-10-13
> BO16483.5prime
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTGTGCANCCTGGAGACCTGC
BO16483.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9884-PA | 999 | oaf-RA | 1..816 | 17..832 | 4036 | 99.7 | Plus |
CG9884-PB | 999 | oaf-RB | 1..816 | 17..832 | 4036 | 99.7 | Plus |
CG9884-PC | 999 | oaf-RC | 1..816 | 17..832 | 4036 | 99.7 | Plus |
CG9884-PD | 1464 | oaf-RD | 1..816 | 17..832 | 4036 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 3223 | CG9884-RD | 76..891 | 17..832 | 4054 | 99.8 | Plus |
oaf-RC | 1734 | CG9884-RC | 76..891 | 17..832 | 4054 | 99.8 | Plus |
oaf-RB | 2831 | CG9884-RB | 76..891 | 17..832 | 4054 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2495570..2495889 | 398..717 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 2493030..2493297 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 2495371..2495488 | 281..398 | 590 | 100 | Plus |
2L | 23513712 | 2L | 2496396..2496514 | 714..832 | 569 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:39:05 has no hits.
BO16483.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:14 Download gff for
BO16483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9884-PD | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:40 Download gff for
BO16483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 60..891 | 2..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:50 Download gff for
BO16483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 60..891 | 2..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:50 Download gff for
BO16483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2493014..2493296 | 2..283 | 98 | -> | Plus |
2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
2L | 2496399..2496514 | 717..832 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:40 Download gff for
BO16483.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2496399..2496514 | 717..832 | 98 | | Plus |
arm_2L | 2493014..2493296 | 2..283 | 98 | -> | Plus |
arm_2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
arm_2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
BO16483.complete Sequence
1030 bp assembled on 2006-10-11
GenBank Submission: FJ633844
> BO16483.complete
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTGTGCAACCTGGAGACCTGCATCGGCTGGTATCCCTGC
GGGCTCAAGTACTGCAAGGGCAAGGGAGTCGCCGGAGCGGACTCGTCGGG
CGCCCAGCAGCAGGCACAGCCGACGAATTATCGCTGCGGCATCAAGACCT
GCCGCAAGTGCACACAGTTCACCTATTATGTGCGGCAGAAACAACAGTGC
CTCTGGGATGAAGCAAGCTTTCTAGACCAT
BO16483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 1464 | CG9884-PD | 1..996 | 17..1012 | 4965 | 99.9 | Plus |
oaf-RC | 999 | CG9884-PC | 1..996 | 17..1012 | 4965 | 99.9 | Plus |
oaf-RB | 999 | CG9884-PB | 1..996 | 17..1012 | 4965 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-RD | 3223 | CG9884-RD | 76..1071 | 17..1012 | 4965 | 99.9 | Plus |
oaf-RC | 1734 | CG9884-RC | 76..1071 | 17..1012 | 4965 | 99.9 | Plus |
oaf-RB | 2831 | CG9884-RB | 76..1071 | 17..1012 | 4965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2495570..2495889 | 398..717 | 1600 | 100 | Plus |
2L | 23513712 | 2L | 2496396..2496694 | 714..1012 | 1480 | 99.7 | Plus |
2L | 23513712 | 2L | 2493030..2493297 | 17..284 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 2495371..2495488 | 281..398 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:56:30 has no hits.
BO16483.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:13 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RC | 1..999 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:55 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RC | 60..1071 | 2..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:41 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 76..1071 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:14 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RC | 60..1071 | 2..1012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:16 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
oaf-RB | 76..1071 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:16 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2493030..2493296 | 17..283 | 100 | -> | Plus |
2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
2L | 2496399..2496694 | 717..1014 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:41 Download gff for
BO16483.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2493030..2493296 | 17..283 | 100 | -> | Plus |
arm_2L | 2495374..2495487 | 284..397 | 100 | -> | Plus |
arm_2L | 2495570..2495888 | 398..716 | 100 | -> | Plus |
arm_2L | 2496399..2496694 | 717..1014 | 98 | | Plus |
BO16483.pep Sequence
Translation from 16 to 1030
> BO16483.pep
MILKEEHPHQSIETAANAARQAQVRWRMAHLKALSRTRTPAHGNCCGRVV
SKNHFFKHSRAFLWFLLCNLVMNADAFAHSQLLINVQNQGGEVIQESITS
NIGEDLITLEFQKTDGTLITQVIDFRNEVQILKALVLGEEERGQSQYQVM
CFATKFNKGDFISSAAMAKLRQKNPHTIRTPEEDKGRETFTMSSWVQLNR
SLPITRHLQGLCAEAMDATYVRDVDLKAWAELPGSSISSLEAATEKFPDT
LSTRCNEVSSLWAPCLCNLETCIGWYPCGLKYCKGKGVAGADSSGAQQQA
QPTNYRCGIKTCRKCTQFTYYVRQKQQCLWDEASFLDH
BO16483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
oaf-PC | 332 | CG9884-PC | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PB | 332 | CG9884-PB | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PA | 332 | CG9884-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
oaf-PD | 487 | CG9884-PD | 1..332 | 1..332 | 1770 | 100 | Plus |