Clone BO16483 Report

Search the DGRC for BO16483

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:83
Vector:pDNR-Dual
Associated Gene/Transcriptoaf-RA
Protein status:BO16483.pep: validated full length
Sequenced Size:1030

Clone Sequence Records

BO16483.3prime Sequence

817 bp (679 high quality bases) assembled on 2006-10-13

> BO16483.3prime
ATGGTCTAGAAAGCTTGCTTCATCCCAGAGGCACTGTTGTTTCTGCCGCA
CATAATAGGTGAACTGTGTGCACTTGCGGCAGGTCTTGATGCCGCAGCGA
TAATTCGTCGGCTGTGCCTGCTGCTGGGCGCCCGACGAGTCCGCTCCGGC
GACTCCCTTGCCCTTGCAGTACTTGAGCCCGCAGGGATACCAGCCGATGC
AGGTCTCCAGGTTGCACAGGCAGGGCGCCCACAGGCTGCTCACCTCGTTG
CAGCGCGTCGAGAGCGTGTCCGGGAACTTTTCCGTGGCGGCCTCCAGGCT
GGAAATCGAGGAGCCTGGTAGCTCCGCCCAAGCTTTAAGGTCCACATCCC
GGACATAGGTGGCGTCCATGGCCTCGGCGCAGAGTCCCTGCAGATGTCTG
GTGATGGGCAGCGAGCGGTTGAGCTGTACCCAGCTGCTCATGGTGAAGGT
CTCACGGCCCTTGTCCTCCTCGGGAGTGCGGATGGTGTGCGGATTCTTCT
GGCGCAGCTTGGCCATTGCCGCCGAGGAGATGAAGTCGCCCTTGTTGAAC
TTGGTTGCGAAGCACATGACCTGGTACTGGCTCTGGCCACGCTCCTCCTC
GCCGAGAACCAGAGCCTTGAGGATTTGAACCTCATTGCGAAAGTCGATGA
CCTGAGTGATGAGCGTTCCGTCGGTCTTCTGAAACTCCAGCGTTATCAGG
TCCTCGCCAATGTTGGAGGTAATACTCTCCTGGATCACCTCGCCGCCCTG
ATTTTGGACGTTAATGAGCAGCTGGGAGTGGGCGAATGCGTCCGCGTTCA
TCACTAAGTTGCACAGC

BO16483.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9884-PA 999 oaf-RA 198..996 817..19 3945 99.7 Minus
CG9884-PB 999 oaf-RB 198..996 817..19 3945 99.7 Minus
CG9884-PC 999 oaf-RC 198..996 817..19 3945 99.7 Minus
CG9884-PD 1464 oaf-RD 198..996 817..19 3945 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 3223 CG9884-RD 273..1071 817..19 3965 99.7 Minus
oaf-RC 1734 CG9884-RC 273..1071 817..19 3965 99.7 Minus
oaf-RB 2831 CG9884-RB 273..1071 817..19 3965 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2495570..2495889 633..314 1600 100 Minus
2L 23513712 2L 2496396..2496694 317..19 1480 99.7 Minus
2L 23513712 2L 2495371..2495488 750..633 575 99.2 Minus
2L 23513712 2L 2493227..2493297 817..747 355 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:40:33 has no hits.

BO16483.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:13 Download gff for BO16483.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9884-PD 198..996 19..817 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:00 Download gff for BO16483.3prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 273..1071 19..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:23 Download gff for BO16483.3prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 273..1071 19..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:23 Download gff for BO16483.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2495374..2495487 634..747 99 -> Minus
2L 2493227..2493296 748..817 100 -> Minus
2L 2495570..2495888 315..633 100 -> Minus
2L 2496399..2496694 19..314 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:00 Download gff for BO16483.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2493227..2493296 748..817 100 -> Minus
arm_2L 2495374..2495487 634..747 99 -> Minus
arm_2L 2495570..2495888 315..633 100 -> Minus
arm_2L 2496399..2496694 19..314 99   Minus

BO16483.5prime Sequence

832 bp (698 high quality bases) assembled on 2006-10-13

> BO16483.5prime
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTGTGCANCCTGGAGACCTGC

BO16483.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9884-PA 999 oaf-RA 1..816 17..832 4036 99.7 Plus
CG9884-PB 999 oaf-RB 1..816 17..832 4036 99.7 Plus
CG9884-PC 999 oaf-RC 1..816 17..832 4036 99.7 Plus
CG9884-PD 1464 oaf-RD 1..816 17..832 4036 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 3223 CG9884-RD 76..891 17..832 4054 99.8 Plus
oaf-RC 1734 CG9884-RC 76..891 17..832 4054 99.8 Plus
oaf-RB 2831 CG9884-RB 76..891 17..832 4054 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2495570..2495889 398..717 1600 100 Plus
2L 23513712 2L 2493030..2493297 17..284 1340 100 Plus
2L 23513712 2L 2495371..2495488 281..398 590 100 Plus
2L 23513712 2L 2496396..2496514 714..832 569 98.3 Plus
Blast to na_te.dros performed on 2015-02-12 17:39:05 has no hits.

BO16483.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:14 Download gff for BO16483.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9884-PD 1..816 17..832 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:40 Download gff for BO16483.5prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 60..891 2..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:50 Download gff for BO16483.5prime
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 60..891 2..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:50 Download gff for BO16483.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2493014..2493296 2..283 98 -> Plus
2L 2495374..2495487 284..397 100 -> Plus
2L 2495570..2495888 398..716 100 -> Plus
2L 2496399..2496514 717..832 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:40 Download gff for BO16483.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2496399..2496514 717..832 98   Plus
arm_2L 2493014..2493296 2..283 98 -> Plus
arm_2L 2495374..2495487 284..397 100 -> Plus
arm_2L 2495570..2495888 398..716 100 -> Plus

BO16483.complete Sequence

1030 bp assembled on 2006-10-11

GenBank Submission: FJ633844

> BO16483.complete
GAAGTTATCAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCA
TCGAAACTGCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATG
GCGCATCTTAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTG
CTGCGGTCGCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGT
TTCTGTGGTTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCC
CACTCCCAGCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCA
GGAGAGTATTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTC
AGAAGACCGACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAG
GTTCAAATCCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAG
CCAGTACCAGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCA
TCTCCTCGGCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATC
CGCACTCCCGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTG
GGTACAGCTCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCT
GCGCCGAGGCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCT
TGGGCGGAGCTACCAGGCTCCTCGATTTCCAGCCTGGAGGCCGCCACGGA
AAAGTTCCCGGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGT
GGGCGCCCTGCCTGTGCAACCTGGAGACCTGCATCGGCTGGTATCCCTGC
GGGCTCAAGTACTGCAAGGGCAAGGGAGTCGCCGGAGCGGACTCGTCGGG
CGCCCAGCAGCAGGCACAGCCGACGAATTATCGCTGCGGCATCAAGACCT
GCCGCAAGTGCACACAGTTCACCTATTATGTGCGGCAGAAACAACAGTGC
CTCTGGGATGAAGCAAGCTTTCTAGACCAT

BO16483.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 1464 CG9884-PD 1..996 17..1012 4965 99.9 Plus
oaf-RC 999 CG9884-PC 1..996 17..1012 4965 99.9 Plus
oaf-RB 999 CG9884-PB 1..996 17..1012 4965 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-RD 3223 CG9884-RD 76..1071 17..1012 4965 99.9 Plus
oaf-RC 1734 CG9884-RC 76..1071 17..1012 4965 99.9 Plus
oaf-RB 2831 CG9884-RB 76..1071 17..1012 4965 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2495570..2495889 398..717 1600 100 Plus
2L 23513712 2L 2496396..2496694 714..1012 1480 99.7 Plus
2L 23513712 2L 2493030..2493297 17..284 1340 100 Plus
2L 23513712 2L 2495371..2495488 281..398 590 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:56:30 has no hits.

BO16483.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:13 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RC 1..999 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:55 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RC 60..1071 2..1012 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:41 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 76..1071 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:14 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RC 60..1071 2..1012 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:16 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
oaf-RB 76..1071 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:16 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2493030..2493296 17..283 100 -> Plus
2L 2495374..2495487 284..397 100 -> Plus
2L 2495570..2495888 398..716 100 -> Plus
2L 2496399..2496694 717..1014 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:41 Download gff for BO16483.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2493030..2493296 17..283 100 -> Plus
arm_2L 2495374..2495487 284..397 100 -> Plus
arm_2L 2495570..2495888 398..716 100 -> Plus
arm_2L 2496399..2496694 717..1014 98   Plus

BO16483.pep Sequence

Translation from 16 to 1030

> BO16483.pep
MILKEEHPHQSIETAANAARQAQVRWRMAHLKALSRTRTPAHGNCCGRVV
SKNHFFKHSRAFLWFLLCNLVMNADAFAHSQLLINVQNQGGEVIQESITS
NIGEDLITLEFQKTDGTLITQVIDFRNEVQILKALVLGEEERGQSQYQVM
CFATKFNKGDFISSAAMAKLRQKNPHTIRTPEEDKGRETFTMSSWVQLNR
SLPITRHLQGLCAEAMDATYVRDVDLKAWAELPGSSISSLEAATEKFPDT
LSTRCNEVSSLWAPCLCNLETCIGWYPCGLKYCKGKGVAGADSSGAQQQA
QPTNYRCGIKTCRKCTQFTYYVRQKQQCLWDEASFLDH

BO16483.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
oaf-PC 332 CG9884-PC 1..332 1..332 1770 100 Plus
oaf-PB 332 CG9884-PB 1..332 1..332 1770 100 Plus
oaf-PA 332 CG9884-PA 1..332 1..332 1770 100 Plus
oaf-PD 487 CG9884-PD 1..332 1..332 1770 100 Plus