Clone Sequence Records
BO16484.3prime Sequence
614 bp (561 high quality bases) assembled on 2006-10-13
> BO16484.3prime
ATGGTCTAGAAAGCTTGCCGCCTCAACACTGTTGACGCTGTATTGTGAGC
TGTCGTACTCGGACACGCTGTCGGAGCCGTAGCCCCCAAATGCTGCCGCC
GAAGGTCGCACACTGCTGGTCCTTATCCCATTATCTTTCAGCACATCGGG
CACGTAGATGGGTGCCGGACCGGCAATTTCCACAATGCTTGGGCGGCGCG
TGGCCGCACACCGCTTAATTGGTGACATAAAGGTGAACAAAGTCAATGTG
ATAGCCAGGCTGATGATAAGCAGCAGGAATCGAGCCATTCCGTTATCGCC
ACGGAAGAAACAAATCATGGCCATGACCAGTACCAGGATCACGACCGAGA
ACTTTGTCATCGTAACTGCAGTGGAGTGGATCTTACCACCCTTGCGTGAT
ATCATGTTTGACGGACCGTAGGCAAAGTAGAGGTTGTGGCGATCCACGAA
GTGTTTTAGGCAGATGTAGATCATGGCGAACGGCATAATCAGCGGACAGG
CAACGCTATACACAATGGCTATGGTGAAAACGAGCGTTGTCCAGGCGTAG
TGCGTTCCGAAAGGAAACTCGATTAGAATAGCCTTACGAATGTACGGCGT
TTCGGCTTTGGATT
BO16484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-PA | 2283 | CG11210-RA | 1685..2280 | 614..19 | 2955 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-RA | 2863 | CG11210-RA | 1863..2458 | 614..19 | 2965 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8101306..8101901 | 614..19 | 2965 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:06 has no hits.
BO16484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:14 Download gff for
BO16484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-PA | 1685..2283 | 15..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:53:42 Download gff for
BO16484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 1863..2461 | 15..614 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:22 Download gff for
BO16484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 1863..2461 | 15..614 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:22 Download gff for
BO16484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8101306..8101904 | 15..614 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:53:42 Download gff for
BO16484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3988811..3989409 | 15..614 | 99 | | Minus |
BO16484.5prime Sequence
682 bp (536 high quality bases) assembled on 2006-10-13
> BO16484.5prime
GAAGTTATCAGTCGACATGGTCATGTCGGAAAACAGCAACATTTCCTACT
GCCAGGCGGTGGCCAATCGCACTTCGTTCTTTACCACCGCCTATAATGGC
ATTCCGGAAACCCTAATACTCAACACCATTTTCTGGGTACTCCTGATCCT
TTTGTTTACGGTTCTGCGGCACCAGGCCGGTGACTTTGGACGTCTAGCGC
TGGTCAACAGCAACGGCAGCAAGAAGCGCTGGACGGAGATTTTCTACTCG
CGCGCCGCCAGTGTGGTCGATCCCCAGCCGAGCACTTCAACGCAGGTATC
GCCTAGACCAAGTACCACCTCCCAAGGAGTTCCCGACTCCACGCCCTTGT
CCCCTATCCAGCCGGAGGAGGGGCTTTTCGGCTGGATACGGGTTACGCTG
AAGCTGCGTAAGGAGACCATACTGCTGCATACTGGACCGGATGCCGTGCA
TTACTTGTCCTTTCAGCAGCACCTGATGGCTGTAATGGCATTGGTTACCA
TAGTCTCCCTGGTCATTATTCTGCCTGTGAATTTCCTGAACGGGCCCAAG
GAAAATCCGTACGATGTGAATGCCTTCGGACGCACCACGATGGCGAATCT
TTCTCCGGATTTCACTTGGCTGTGGGTGCACACGATCATCACGATTCTGT
ATATTCCGCTCGTAGTGCTCATCATGCGGCGC
BO16484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-PA | 2283 | CG11210-RA | 1..666 | 17..682 | 3255 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-RA | 2863 | CG11210-RA | 178..844 | 16..682 | 3290 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8099563..8100229 | 16..682 | 3290 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 16:28:02 has no hits.
BO16484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:18 Download gff for
BO16484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-PA | 1..666 | 17..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:31:22 Download gff for
BO16484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 178..844 | 16..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:01:21 Download gff for
BO16484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 178..844 | 16..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:01:21 Download gff for
BO16484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8099563..8100229 | 16..682 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:31:22 Download gff for
BO16484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3987068..3987734 | 16..682 | 99 | | Plus |
BO16484.complete Sequence
2314 bp assembled on 2006-12-18
GenBank Submission: FJ633845
> BO16484.complete
GAAGTTATCAGTCGACATGGTCATGTCGGAAAACAGCAACATTTCCTACT
GCCAGGCGGTGGCCAATCGCACTTCGTTCTTTACCACCGCCTATAATGGC
ATTCCGGAAACCCTAATACTCAACACCATTTTCTGGGTACTCCTGATCCT
TTTGTTTACGGTTCTGCGGCACCAGGCCGGTGACTTTGGACGTCTAGCGC
TGGTCAACAGCAACGGCAGCAAGAAGCGCTGGACGGAGATTTTCTACTCG
CGCGCCGCCAGTGTGGTCGATCCCCAGCCGAGCACTTCAACGCAGGTATC
GCCTAGACCAAGTACCACCTCCCAAGGAGTTCCCGACTCCACGCCCTTGT
CCCCTATCCAGCCGGAGGAGGGGCTTTTCGGCTGGATACGGGTTACGCTG
AAGCTGCGTAAGGAGACCATACTGCTGCATACTGGACCGGATGCCGTGCA
TTACTTGTCCTTTCAGCAGCACCTGATGGCTGTAATGGCATTGGTTACCA
TAGTCTCCCTGGTCATTATTCTGCCTGTGAATTTCCTGAACGGGCCCAAG
GAAAATCCGTACGATGTGAATGCCTTCGGACGCACCACGATGGCGAATCT
TTCTCCGGATTCACCTTGGCTGTGGGTGCACACGATCATCACGATTCTGT
ATATTCCGCTCGTAGTGCTCATCATGCGGCGCGCCTCGGGACGGAATGCC
TTCAAAAAGGCAGCCACCCGCACGATTATGATTTCAAACATATCCTCCAG
CGATCGCAACAAGACTGTGGTACGGAACTATATGCAGGAGCTCTTTCCGG
ACGTCACCATCGAGAATGTGTCAATTGCGTACAACATTTCACGACTATAC
GTAAGGAACGCCGAGTTCGAGCGAGTTCATGAAGCACGATTGTACTGCGA
GCACCATAGGAACAGGGATACTCTCATGGTTAAACCAGAAATGTGTTCCT
GCAAAAAGGAGAACGCCTACGAATATTATCAGCGAGAGGAGCGCAAGTTG
TCCGGCGATGTTGCCCGTCTGCGTGCTTCCACCATGAATGAGCCCCTGGA
CATTGCGTTTATCACCGTGTCCACTGTGCAGGAGGCCCAGAACATAGTAA
CGCACTTTACACCGGGCACCTACCGCCAATGGCACTTGGTGTTCGCTCCG
TCGCCTGATGATCTTTTTTGGGAGAACCTAAATGTGAATAAGAGTCATTG
GTACTTGAAATTCTTCTGTGTGAATGCAGTGCTTTTTCTTGTTCTCTTCT
TCCTGTCCACACCGGCCATGGTGGTAAGCCTTCTAAACAGTCGACCATGG
GTAAAGGAAACAGAGGGTAAGATCTCGCCCCTCGTTGCCGACTTCCTGCC
CACATTGATGCTCTGGACTCTTTCGGCTCTAATGCCTGTGATTGTTGCCA
TTTCGGACAAGTGGATGCGGCACTACACGCGCTCCAAGCAGAACTACTCA
ATCATGACGAAGTGCTTTGGCTATCTGCTTATGATGATCATGATTCTGCC
TTCCCTCGGACTGACATCGGCACAGGCGCTGCTAGAGTGGGGATTCTTAA
ATCAGACTGATCGCTGGCAGTGCATTTTCCTGCCGGATCGCGGCTCCTTC
TATGTGAACTACATCATTACGGCTGCGTTTATCGGTACAGCGTTGGAGCT
GCTACGCTTCCCGGAGCTGATTGTATATATCTGGTCATTGCTAAAGGCGA
AATCCAAGGCCGAAACGCCGTACATTCGTAAGGCTATTCTAATCGAGTTT
CCTTTCGGAACGCACTACGCCTGGACAACGCTCGTTTTCACCATAGCCAT
TGTGTATAGCGTTGCCTGTCCGCTGATTATGCCGTTCGCCATGATCTACA
TCTGCCTAAAACACTTCGTGGATCGCCACAACCTCTACTTTGCCTACGGT
CCGTCAAACATGATATCACGCAAGGGTGGTAAGATCCACTCCACTGCAGT
TACGATGACAAAGTTCTCGGTCGTGATCCTGGTACTGGTCATGGCCATGA
TTTGTTTCTTCCGTGGCGATAACGGAATGGCTCGATTCCTGCTGCTTATC
ATCAGCCTGGCTATCACATTGACTTTGTTCACCTTTATGTCACCAATTAA
GCGGTGTGCGGCCACGCGCCGCCCAAGCATTGTGGAAATTGCCGGTCCGG
CACCCATCTACGTGCCCGATGTGCTGAAAGATAATGGGATAAGGACCAGC
AGTGTGCGACCTTCGGCGGCAGCATTTGGGGGCTACGGCTCCGACAGCGT
GTCCGAGTACGACAGCTCACAATACAGCGTCAACAGTGTTGAGGCGGCAA
GCTTTCTAGACCAT
BO16484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-RA | 2283 | CG11210-PA | 1..2280 | 17..2296 | 11400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-RA | 2863 | CG11210-RA | 178..2458 | 16..2296 | 11405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8100533..8101901 | 928..2296 | 6845 | 100 | Plus |
| 2R | 25286936 | 2R | 8099563..8100477 | 16..930 | 4575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:41:23 has no hits.
BO16484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:29 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 1..2283 | 17..2300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:49 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 177..2460 | 16..2300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:27 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 179..2458 | 17..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:29 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 177..2460 | 16..2300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:52 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 179..2458 | 17..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:52 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8099564..8100475 | 17..928 | 100 | -> | Plus |
| 2R | 8100534..8101901 | 929..2298 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:27 Download gff for
BO16484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3987069..3987980 | 17..928 | 100 | -> | Plus |
| arm_2R | 3988039..3989406 | 929..2298 | 99 | | Plus |
BO16484.pep Sequence
Translation from 16 to 2314
> BO16484.pep
MVMSENSNISYCQAVANRTSFFTTAYNGIPETLILNTIFWVLLILLFTVL
RHQAGDFGRLALVNSNGSKKRWTEIFYSRAASVVDPQPSTSTQVSPRPST
TSQGVPDSTPLSPIQPEEGLFGWIRVTLKLRKETILLHTGPDAVHYLSFQ
QHLMAVMALVTIVSLVIILPVNFLNGPKENPYDVNAFGRTTMANLSPDSP
WLWVHTIITILYIPLVVLIMRRASGRNAFKKAATRTIMISNISSSDRNKT
VVRNYMQELFPDVTIENVSIAYNISRLYVRNAEFERVHEARLYCEHHRNR
DTLMVKPEMCSCKKENAYEYYQREERKLSGDVARLRASTMNEPLDIAFIT
VSTVQEAQNIVTHFTPGTYRQWHLVFAPSPDDLFWENLNVNKSHWYLKFF
CVNAVLFLVLFFLSTPAMVVSLLNSRPWVKETEGKISPLVADFLPTLMLW
TLSALMPVIVAISDKWMRHYTRSKQNYSIMTKCFGYLLMMIMILPSLGLT
SAQALLEWGFLNQTDRWQCIFLPDRGSFYVNYIITAAFIGTALELLRFPE
LIVYIWSLLKAKSKAETPYIRKAILIEFPFGTHYAWTTLVFTIAIVYSVA
CPLIMPFAMIYICLKHFVDRHNLYFAYGPSNMISRKGGKIHSTAVTMTKF
SVVILVLVMAMICFFRGDNGMARFLLLIISLAITLTLFTFMSPIKRCAAT
RRPSIVEIAGPAPIYVPDVLKDNGIRTSSVRPSAAAFGGYGSDSVSEYDS
SQYSVNSVEAASFLDH
BO16484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-PA | 760 | CG11210-PA | 1..760 | 1..760 | 3943 | 100 | Plus |
