Clone Sequence Records
BO16487.complete Sequence
1912 bp assembled on 2010-04-13
GenBank Submission: KX798144
> BO16487.complete
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGC
GGAGCTGGAGCCCCTCAAGGTCCTGCCTAAGGATCAGTACCTGCAGCTGC
CGCAGCGCACGGATACAGCGGTCTCGGGGGGTGCCCTATGCCGGTCCAAC
AGCGTTGGCCACAACCTCAAGCCCAATCTGAACAACAACTCGAACGGCGC
CGTCAATGGACAGGGACCCACCTTGGTGACCCCACCGCAGGCGGTGGTGA
AGAGCACCAGCAACGATGACATCGCCCGCAAATGCCACAGCCAGTTGCAG
CTGACTCCTCTCAGGGATGCGCATCGCGAGCGGAGTGCCAGTGGTACCAT
GTACCGACCGGATGCTCTCTACCAGGGCTCCCTCCACAACCTACCCGACT
ATGTGAGCTCCAGGAACGATCTGAGCCGTTCCATGTCCGGCTCCGGCGTT
ATAAAGCGGTACGGATCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCA
GGAGGAGGCCAAATGCTGTGGCTGCATCACTTGCTCCAAGGAGACCCGCG
ACACATTCGCCGAAATGATGAACTTCTCTCTGCTCAAGGACATGGTGTTC
GTGATCTTCTCCGTGTCTAATTTCTGCACGAGCATTGGCTTCAACGTTCC
GTACCTGTATGTGGTCGCCTACGCGGAGACCCTGAAACTCACCAAGACGG
ATGCCAGCTATCTGATATCCACGATTGGCGTGGCCAACACAGTGGGCCGC
ATAATCCTGGGCTACATATCGGATAAACCGTGGGTGAACCGCCTCCTGGT
CTACAACGTCTGCCTCACCGCCTGCGGAGTTTCCACTGCCATGGTGCCGC
TATGCCACGACTTCCAATCCCTGGCCTTCTACTGCTGCGTCTTTGGCTTC
ACGATCGGCGCCTATGTGGGCCTGACCTCGGTCATTCTGGTGGACCTGTT
GGGACTGGACAAGCTGACCAACGCCTTTGGCCTGCTGCTGCTCTTCCAGG
GTATTGCCAGCTTCATCGGTCCGCCCATCGGAGGCTGGATGTACGACCTG
ACGGACTCGTATGCGCCGGCCTTCCTGATGGCCGGACTCATGATCGCCAT
CAGCGGACTGGTGATGTTCGCCATTCCGCCGCTGCAGCGCCTGCAGGTTC
GCAAGTCGGAGCGAAAGCCCCACACCGAGCACCTGGCCCTTAGTGCAAGC
TTTCTAGACCAT
BO16487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 1881 | CG3456-PB | 1..1878 | 17..1894 | 9375 | 99.9 | Plus |
Mct1-RA | 1881 | CG3456-PA | 1..1878 | 17..1894 | 9375 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 2738 | CG3456-RB | 411..2290 | 15..1894 | 9385 | 99.9 | Plus |
Mct1-RA | 2955 | CG3456-RA | 628..2507 | 15..1894 | 9385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2200004..2200606 | 278..880 | 3000 | 99.8 | Plus |
X | 23542271 | X | 2204103..2204437 | 1198..1532 | 1675 | 100 | Plus |
X | 23542271 | X | 2204509..2204710 | 1533..1734 | 1010 | 100 | Plus |
X | 23542271 | X | 2200674..2200870 | 880..1076 | 985 | 100 | Plus |
X | 23542271 | X | 2204763..2204925 | 1732..1894 | 815 | 100 | Plus |
X | 23542271 | X | 2198800..2198943 | 15..158 | 720 | 100 | Plus |
X | 23542271 | X | 2200933..2201062 | 1073..1202 | 650 | 100 | Plus |
X | 23542271 | X | 2199820..2199940 | 159..279 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:57:01 has no hits.
BO16487.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:14 Download gff for
BO16487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 628..2505 | 17..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:09 Download gff for
BO16487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 630..2507 | 17..1896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:17 Download gff for
BO16487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 630..2507 | 17..1896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:17 Download gff for
BO16487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2198802..2198943 | 17..158 | 100 | -> | Plus |
X | 2199820..2199939 | 159..278 | 100 | -> | Plus |
X | 2200005..2200606 | 279..880 | 99 | -> | Plus |
X | 2200675..2200869 | 881..1075 | 100 | -> | Plus |
X | 2200936..2201061 | 1076..1201 | 100 | -> | Plus |
X | 2204107..2204437 | 1202..1532 | 100 | -> | Plus |
X | 2204509..2204709 | 1533..1733 | 100 | -> | Plus |
X | 2204765..2204925 | 1734..1896 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:09 Download gff for
BO16487.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2092835..2092976 | 17..158 | 100 | -> | Plus |
arm_X | 2093853..2093972 | 159..278 | 100 | -> | Plus |
arm_X | 2094038..2094639 | 279..880 | 99 | -> | Plus |
arm_X | 2094708..2094902 | 881..1075 | 100 | -> | Plus |
arm_X | 2094969..2095094 | 1076..1201 | 100 | -> | Plus |
arm_X | 2098140..2098470 | 1202..1532 | 100 | -> | Plus |
arm_X | 2098542..2098742 | 1533..1733 | 100 | -> | Plus |
arm_X | 2098798..2098958 | 1734..1896 | 98 | | Plus |
BO16487.3prime Sequence
702 bp (561 high quality bases) assembled on 2006-10-13
> BO16487.3prime
ATGGTCTAGAAAGCTTGCACTAAGGGCCAGGTGCTCGGTGTGGGGCTTTC
GCTCCGACTTGCGAACCTGCAGGCGCTGCAGCGGCGGAATGGCGAACATC
ACCAGTCCGCTGATGGCGATCATGAGTCCGGCCATCAGGAAGGCCGGCGC
ATACGAGTCCGTCAGGTCGTACATCCAGCCTCCGATGGGCGGACCGATGA
AGCTGGCAATACCCTGGAAGAGCAGCAGCAGGCCAAAGGCGTTGGTCAGC
TTGTCCAGTCCCAACAGGTCCACCAGAATGACCGAGGTCAGGCCCACATA
GGCGCCGATCGTGAAGCCAAAGACGCAGCAGTAGAAGGCCAGGGATTGGA
AGTCGTGGCATAGCGGCACCATGGCAGTGGAAACTCCGCAGGCGGTGAGG
CAGACGTTGTAGACCAGGAGGCGGTTCACCCACGGTTTATCCGATATGTA
GCCCAGGATTATGCGGCCCACTGTGTTGGCCACGCCAATCGTGGATATCA
GATAGCTGGCATCCGTCTTGGTGAGTTTCAGGGTCTCCGCGTAGGCGACC
ACATACAGGTACGGAACGTTGAAGCCAATGCTCGTGCAGAAATTAGACAC
GGAGAAGATCACGAACACCATGTCCTTGAGCAGAGAGAAGTCATCATTTC
GGCGAATGTGTCGCGGGTCTCCTTGGAGCAAGTGATGCAGCCACAGCATT
TG
BO16487.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3456-PA | 1881 | Mct1-RA | 1194..1878 | 702..19 | 3385 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 2738 | CG3456-RB | 1606..2290 | 702..19 | 3400 | 99.9 | Minus |
Mct1-RA | 2955 | CG3456-RA | 1823..2507 | 702..19 | 3400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2204115..2204437 | 702..381 | 1565 | 99.7 | Minus |
X | 23542271 | X | 2204509..2204710 | 380..179 | 1010 | 100 | Minus |
X | 23542271 | X | 2204763..2204925 | 181..19 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:53 has no hits.
BO16487.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:19 Download gff for
BO16487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3456-PA | 1194..1881 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:45 Download gff for
BO16487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 1823..2507 | 19..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:09 Download gff for
BO16487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 1823..2507 | 19..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:09 Download gff for
BO16487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2204765..2204925 | 19..179 | 100 | | Minus |
X | 2204115..2204437 | 381..702 | 99 | -> | Minus |
X | 2204509..2204709 | 180..380 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:45 Download gff for
BO16487.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2098148..2098470 | 381..702 | 99 | -> | Minus |
arm_X | 2098542..2098742 | 180..380 | 100 | -> | Minus |
arm_X | 2098798..2098958 | 19..179 | 100 | | Minus |
BO16487.5prime Sequence
748 bp (673 high quality bases) assembled on 2006-10-13
> BO16487.5prime
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGGCAAGAAGTCGGCCATTATCGATCAGAACACCACCCGC
BO16487.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3456-PA | 1881 | Mct1-RA | 1..729 | 17..745 | 3620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-RB | 2738 | CG3456-RB | 411..1141 | 15..745 | 3640 | 99.9 | Plus |
Mct1-RA | 2955 | CG3456-RA | 628..1358 | 15..745 | 3640 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2200004..2200471 | 278..745 | 2325 | 99.8 | Plus |
X | 23542271 | X | 2198800..2198943 | 15..158 | 720 | 100 | Plus |
X | 23542271 | X | 2199820..2199940 | 159..279 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:51:15 has no hits.
BO16487.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:20 Download gff for
BO16487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3456-PA | 1..731 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:13:54 Download gff for
BO16487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 623..1360 | 9..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:50 Download gff for
BO16487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mct1-RA | 623..1360 | 9..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:50 Download gff for
BO16487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2198795..2198943 | 9..158 | 98 | -> | Plus |
X | 2199820..2199939 | 159..278 | 100 | -> | Plus |
X | 2200005..2200473 | 279..748 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:13:54 Download gff for
BO16487.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2093853..2093972 | 159..278 | 100 | -> | Plus |
arm_X | 2092828..2092976 | 9..158 | 98 | -> | Plus |
arm_X | 2094038..2094506 | 279..748 | 99 | | Plus |
BO16487.pep Sequence
Translation from 16 to 1912
> BO16487.pep
MVHGPPARRKSQQQHEACEMDMERQPTPPDGGWGWVVVFGSFMIHIVTDG
MTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSGPISSSFVNRYGC
RAVTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIVSV
TQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIV
LNCIIFGAMFRPLELEAPPQTPPNTPSTPKLAKKSAIIDQNTTAAELEPL
KVLPKDQYLQLPQRTDTAVSGGALCRSNSVGHNLKPNLNNNSNGAVNGQG
PTLVTPPQAVVKSTSNDDIARKCHSQLQLTPLRDAHRERSASGTMYRPDA
LYQGSLHNLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVSQSQEEAKC
CGCITCSKETRDTFAEMMNFSLLKDMVFVIFSVSNFCTSIGFNVPYLYVV
AYAETLKLTKTDASYLISTIGVANTVGRIILGYISDKPWVNRLLVYNVCL
TACGVSTAMVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKL
TNAFGLLLLFQGIASFIGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVM
FAIPPLQRLQVRKSERKPHTEHLALSASFLDH
BO16487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mct1-PB | 626 | CG3456-PB | 1..626 | 1..626 | 3268 | 100 | Plus |
Mct1-PA | 626 | CG3456-PA | 1..626 | 1..626 | 3268 | 100 | Plus |
CG8468-PB | 678 | CG8468-PB | 17..671 | 1..616 | 784 | 31.1 | Plus |
CG11665-PB | 658 | CG11665-PB | 42..645 | 21..616 | 647 | 28.1 | Plus |
CG11665-PA | 658 | CG11665-PA | 42..645 | 21..616 | 647 | 28.1 | Plus |