Clone BO16487 Report

Search the DGRC for BO16487

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptMct1-RA
Protein status:BO16487.pep: Imported from assembly
Sequenced Size:1912

Clone Sequence Records

BO16487.complete Sequence

1912 bp assembled on 2010-04-13

GenBank Submission: KX798144

> BO16487.complete
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGCCAAGAAGTCGGCCATTATCGATCAGAACACCACCGCGGC
GGAGCTGGAGCCCCTCAAGGTCCTGCCTAAGGATCAGTACCTGCAGCTGC
CGCAGCGCACGGATACAGCGGTCTCGGGGGGTGCCCTATGCCGGTCCAAC
AGCGTTGGCCACAACCTCAAGCCCAATCTGAACAACAACTCGAACGGCGC
CGTCAATGGACAGGGACCCACCTTGGTGACCCCACCGCAGGCGGTGGTGA
AGAGCACCAGCAACGATGACATCGCCCGCAAATGCCACAGCCAGTTGCAG
CTGACTCCTCTCAGGGATGCGCATCGCGAGCGGAGTGCCAGTGGTACCAT
GTACCGACCGGATGCTCTCTACCAGGGCTCCCTCCACAACCTACCCGACT
ATGTGAGCTCCAGGAACGATCTGAGCCGTTCCATGTCCGGCTCCGGCGTT
ATAAAGCGGTACGGATCCCTTCGCCAGAGCAACAACGTGTCCCAGAGTCA
GGAGGAGGCCAAATGCTGTGGCTGCATCACTTGCTCCAAGGAGACCCGCG
ACACATTCGCCGAAATGATGAACTTCTCTCTGCTCAAGGACATGGTGTTC
GTGATCTTCTCCGTGTCTAATTTCTGCACGAGCATTGGCTTCAACGTTCC
GTACCTGTATGTGGTCGCCTACGCGGAGACCCTGAAACTCACCAAGACGG
ATGCCAGCTATCTGATATCCACGATTGGCGTGGCCAACACAGTGGGCCGC
ATAATCCTGGGCTACATATCGGATAAACCGTGGGTGAACCGCCTCCTGGT
CTACAACGTCTGCCTCACCGCCTGCGGAGTTTCCACTGCCATGGTGCCGC
TATGCCACGACTTCCAATCCCTGGCCTTCTACTGCTGCGTCTTTGGCTTC
ACGATCGGCGCCTATGTGGGCCTGACCTCGGTCATTCTGGTGGACCTGTT
GGGACTGGACAAGCTGACCAACGCCTTTGGCCTGCTGCTGCTCTTCCAGG
GTATTGCCAGCTTCATCGGTCCGCCCATCGGAGGCTGGATGTACGACCTG
ACGGACTCGTATGCGCCGGCCTTCCTGATGGCCGGACTCATGATCGCCAT
CAGCGGACTGGTGATGTTCGCCATTCCGCCGCTGCAGCGCCTGCAGGTTC
GCAAGTCGGAGCGAAAGCCCCACACCGAGCACCTGGCCCTTAGTGCAAGC
TTTCTAGACCAT

BO16487.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 1881 CG3456-PB 1..1878 17..1894 9375 99.9 Plus
Mct1-RA 1881 CG3456-PA 1..1878 17..1894 9375 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 2738 CG3456-RB 411..2290 15..1894 9385 99.9 Plus
Mct1-RA 2955 CG3456-RA 628..2507 15..1894 9385 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2200004..2200606 278..880 3000 99.8 Plus
X 23542271 X 2204103..2204437 1198..1532 1675 100 Plus
X 23542271 X 2204509..2204710 1533..1734 1010 100 Plus
X 23542271 X 2200674..2200870 880..1076 985 100 Plus
X 23542271 X 2204763..2204925 1732..1894 815 100 Plus
X 23542271 X 2198800..2198943 15..158 720 100 Plus
X 23542271 X 2200933..2201062 1073..1202 650 100 Plus
X 23542271 X 2199820..2199940 159..279 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:57:01 has no hits.

BO16487.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:14 Download gff for BO16487.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 628..2505 17..1896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:09 Download gff for BO16487.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 630..2507 17..1896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:17 Download gff for BO16487.complete
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 630..2507 17..1896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:17 Download gff for BO16487.complete
Subject Subject Range Query Range Percent Splice Strand
X 2198802..2198943 17..158 100 -> Plus
X 2199820..2199939 159..278 100 -> Plus
X 2200005..2200606 279..880 99 -> Plus
X 2200675..2200869 881..1075 100 -> Plus
X 2200936..2201061 1076..1201 100 -> Plus
X 2204107..2204437 1202..1532 100 -> Plus
X 2204509..2204709 1533..1733 100 -> Plus
X 2204765..2204925 1734..1896 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:09 Download gff for BO16487.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2092835..2092976 17..158 100 -> Plus
arm_X 2093853..2093972 159..278 100 -> Plus
arm_X 2094038..2094639 279..880 99 -> Plus
arm_X 2094708..2094902 881..1075 100 -> Plus
arm_X 2094969..2095094 1076..1201 100 -> Plus
arm_X 2098140..2098470 1202..1532 100 -> Plus
arm_X 2098542..2098742 1533..1733 100 -> Plus
arm_X 2098798..2098958 1734..1896 98   Plus

BO16487.3prime Sequence

702 bp (561 high quality bases) assembled on 2006-10-13

> BO16487.3prime
ATGGTCTAGAAAGCTTGCACTAAGGGCCAGGTGCTCGGTGTGGGGCTTTC
GCTCCGACTTGCGAACCTGCAGGCGCTGCAGCGGCGGAATGGCGAACATC
ACCAGTCCGCTGATGGCGATCATGAGTCCGGCCATCAGGAAGGCCGGCGC
ATACGAGTCCGTCAGGTCGTACATCCAGCCTCCGATGGGCGGACCGATGA
AGCTGGCAATACCCTGGAAGAGCAGCAGCAGGCCAAAGGCGTTGGTCAGC
TTGTCCAGTCCCAACAGGTCCACCAGAATGACCGAGGTCAGGCCCACATA
GGCGCCGATCGTGAAGCCAAAGACGCAGCAGTAGAAGGCCAGGGATTGGA
AGTCGTGGCATAGCGGCACCATGGCAGTGGAAACTCCGCAGGCGGTGAGG
CAGACGTTGTAGACCAGGAGGCGGTTCACCCACGGTTTATCCGATATGTA
GCCCAGGATTATGCGGCCCACTGTGTTGGCCACGCCAATCGTGGATATCA
GATAGCTGGCATCCGTCTTGGTGAGTTTCAGGGTCTCCGCGTAGGCGACC
ACATACAGGTACGGAACGTTGAAGCCAATGCTCGTGCAGAAATTAGACAC
GGAGAAGATCACGAACACCATGTCCTTGAGCAGAGAGAAGTCATCATTTC
GGCGAATGTGTCGCGGGTCTCCTTGGAGCAAGTGATGCAGCCACAGCATT
TG

BO16487.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3456-PA 1881 Mct1-RA 1194..1878 702..19 3385 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 2738 CG3456-RB 1606..2290 702..19 3400 99.9 Minus
Mct1-RA 2955 CG3456-RA 1823..2507 702..19 3400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2204115..2204437 702..381 1565 99.7 Minus
X 23542271 X 2204509..2204710 380..179 1010 100 Minus
X 23542271 X 2204763..2204925 181..19 815 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:23:53 has no hits.

BO16487.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:19 Download gff for BO16487.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3456-PA 1194..1881 18..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:45 Download gff for BO16487.3prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 1823..2507 19..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:09 Download gff for BO16487.3prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 1823..2507 19..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:09 Download gff for BO16487.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2204765..2204925 19..179 100   Minus
X 2204115..2204437 381..702 99 -> Minus
X 2204509..2204709 180..380 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:45 Download gff for BO16487.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2098148..2098470 381..702 99 -> Minus
arm_X 2098542..2098742 180..380 100 -> Minus
arm_X 2098798..2098958 19..179 100   Minus

BO16487.5prime Sequence

748 bp (673 high quality bases) assembled on 2006-10-13

> BO16487.5prime
GAAGTTATCAGTCGACATGGTACACGGACCGCCGGCTCGCAGAAAATCAC
AGCAGCAGCATGAGGCCTGCGAGATGGACATGGAGCGGCAGCCCACACCG
CCAGACGGCGGATGGGGATGGGTGGTGGTCTTCGGCTCCTTCATGATACA
CATAGTTACCGATGGCATGACCTACTCCTTTGGCATCTTCTACAATGAGT
TCCTGGACTATTTCAACGAGGGCAAAGGCTACACGGCTTGGATTGCCTCC
ATAATGGTGGGCGTGACCTTCTCATCCGGACCGATCAGCTCGTCGTTCGT
AAATCGATATGGCTGTCGTGCGGTGACCATAGCGGGCTCCATTTTGGCCG
CCAGCTGCATCATCGTGAGCATGTTCGCCCAGAATGTCCTCACGCTGATC
ATTACGATCGGTTTCGGAACGGGCTTGGGCTTTGGGCTCATCTACCTGCC
GGCCATTGTGAGTGTGACGCAGTATTTCGAAGCCAAGAGATCTCTGGCCA
CGGGAATCGCCGTCTGCGGCTCCGGATTCGGTACGTTTGTCTTTGCCCCG
CTCACGGAGTTCCTGATCGGCAACTACGGGTGGCGCGGTGCGATGCTAAT
TATCGGCGGCATCGTGCTCAACTGCATCATCTTTGGGGCCATGTTCCGAC
CGCTGGAGCTAGAGGCACCGCCGCAGACGCCGCCGAACACGCCGAGCACT
CCCAAGCTGGGCAAGAAGTCGGCCATTATCGATCAGAACACCACCCGC

BO16487.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3456-PA 1881 Mct1-RA 1..729 17..745 3620 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-RB 2738 CG3456-RB 411..1141 15..745 3640 99.9 Plus
Mct1-RA 2955 CG3456-RA 628..1358 15..745 3640 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2200004..2200471 278..745 2325 99.8 Plus
X 23542271 X 2198800..2198943 15..158 720 100 Plus
X 23542271 X 2199820..2199940 159..279 605 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:51:15 has no hits.

BO16487.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:20 Download gff for BO16487.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3456-PA 1..731 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 06:13:54 Download gff for BO16487.5prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 623..1360 9..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:19:50 Download gff for BO16487.5prime
Subject Subject Range Query Range Percent Splice Strand
Mct1-RA 623..1360 9..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:19:50 Download gff for BO16487.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2198795..2198943 9..158 98 -> Plus
X 2199820..2199939 159..278 100 -> Plus
X 2200005..2200473 279..748 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 06:13:54 Download gff for BO16487.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2093853..2093972 159..278 100 -> Plus
arm_X 2092828..2092976 9..158 98 -> Plus
arm_X 2094038..2094506 279..748 99   Plus

BO16487.pep Sequence

Translation from 16 to 1912

> BO16487.pep
MVHGPPARRKSQQQHEACEMDMERQPTPPDGGWGWVVVFGSFMIHIVTDG
MTYSFGIFYNEFLDYFNEGKGYTAWIASIMVGVTFSSGPISSSFVNRYGC
RAVTIAGSILAASCIIVSMFAQNVLTLIITIGFGTGLGFGLIYLPAIVSV
TQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIV
LNCIIFGAMFRPLELEAPPQTPPNTPSTPKLAKKSAIIDQNTTAAELEPL
KVLPKDQYLQLPQRTDTAVSGGALCRSNSVGHNLKPNLNNNSNGAVNGQG
PTLVTPPQAVVKSTSNDDIARKCHSQLQLTPLRDAHRERSASGTMYRPDA
LYQGSLHNLPDYVSSRNDLSRSMSGSGVIKRYGSLRQSNNVSQSQEEAKC
CGCITCSKETRDTFAEMMNFSLLKDMVFVIFSVSNFCTSIGFNVPYLYVV
AYAETLKLTKTDASYLISTIGVANTVGRIILGYISDKPWVNRLLVYNVCL
TACGVSTAMVPLCHDFQSLAFYCCVFGFTIGAYVGLTSVILVDLLGLDKL
TNAFGLLLLFQGIASFIGPPIGGWMYDLTDSYAPAFLMAGLMIAISGLVM
FAIPPLQRLQVRKSERKPHTEHLALSASFLDH

BO16487.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Mct1-PB 626 CG3456-PB 1..626 1..626 3268 100 Plus
Mct1-PA 626 CG3456-PA 1..626 1..626 3268 100 Plus
CG8468-PB 678 CG8468-PB 17..671 1..616 784 31.1 Plus
CG11665-PB 658 CG11665-PB 42..645 21..616 647 28.1 Plus
CG11665-PA 658 CG11665-PA 42..645 21..616 647 28.1 Plus