Clone Sequence Records
BO16489.complete Sequence
2152 bp assembled on 2010-07-15
GenBank Submission: KX798836
> BO16489.complete
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCCATCGCGAGCAGGAGCAGCGAAATGCGGAGG
ATGTGCTATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATG
GGCAAGTTCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCC
GCGAGTGCGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATA
ACTACGAGACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACC
TTCAAGGCTGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCG
GCAGCAGTTCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGG
ATATTTACAATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTAC
ATTCCGCAGCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTG
CACGATTGATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCA
CACTCCAGAGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAA
CTGGGTCCCAAGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAG
GAACTTCAACGAACTTGTTCTGGATCAGAACAAAAAGCCACACAATCCGA
TGATCAACGCTGGTGCCATTCTGACGTGCTCCCTGATGAACGCCCTTGTC
AAGCCGGACATGACCTCCGCTGAGATCTTCGACTACACCATGTCTTGGTT
CAAACGGCTGTCGGGCGGAGAGTATATCGGCTTTAATAATGCCGTATTCC
TGTCCGAACGCGAGGCTGCCGATCGGAACTATGCCCTGGGCTTCTACATG
CGGGAGAACAAGTGCTTCCCCAAGCGCACCAATCTCAAGGAGGTGATGGA
CTTTTACTTCCAGTGCTGCTCCATGGAGACCAACTGCGAGGCAATGTCCG
TAATCGCGGCCAGTTTGGCCAATGGTGGCATCTGCCCCACCACCGAGGAG
AAGGTGTTCCGGCCGGAGGTAATCCGGGATGTGCTCTCGATTATGCACTC
ATGCGGTACATACGACTATTCCGGACAGTTCGCCTTCAAGGTGGGTCTGC
CAGCCAAGTCTGGAGTGAGTGGCGGCATGATGCTGGTCATCCCCAACGTA
ATGGGCATCTTTGCCTGGTCTCCGCCCTTGGATCACTTAGGCAATACAGT
GAGAGGACTACAGTTTTGTGAGGAGCTGGTCTCCATGTTCAATTTCCATC
GCTACGACAACCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGAAGCAC
CGCTACGAGACCAAGGGTCTGTCCATCGTGAATCTACTCTTTTCAGCTGC
CAGCGGCGATGTTACAGCCTTGCGGCGTCATCGTCTCTCCGGAATGGATA
TCACTCTGGCCGACTACGATGGTCGCACTGCCCTCCATTTGGCTGCGTCC
GAAGGACACTTGGAGTGCGTCAAGTTCCTGCTGGAACAGTGTCATGTACC
ACACAACCCCAAGGATCGCTGGGGAAATCTGCCCGTGGATGAGGCAGAGA
ACTTCGGCCACTGTCACGTGGTGGAGTTCCTTCGCTCCTGGGCGGAGAAG
GCCGACCAGTCCAGCGAGGAGTGCAAGCCCGAGGCGGTGACCAGCAAGAC
ACAAGCGGATGAGGAAATCTGCAGCACAAGCGACCTGGAGACCAGTCCGA
CAACCAGTCCCATTCCCACTCCCGTGGAATCCGGATCCAGGGCAGGATCA
GGACGGTCCAGCCCGGTGCCATCGGATGCGGGCAGCACGGCGAGCGCCGG
AAGCAGCATCGATGACAAAACCAAGCCGGGACTAGCAAGCTTTCTAGACC
AT
BO16489.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RA | 2121 | CG42708-PA | 1..2118 | 17..2134 | 10590 | 100 | Plus |
| CG42708-RH | 2328 | CG42708-PH | 1..1948 | 17..1964 | 9740 | 100 | Plus |
| CG42708-RE | 1947 | CG42708-PE | 22..1944 | 212..2134 | 9615 | 100 | Plus |
| CG42708-RH | 2328 | CG42708-PH | 2153..2325 | 1962..2134 | 865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RA | 3005 | CG42708-RA | 192..2309 | 17..2134 | 10590 | 100 | Plus |
| CG42708-RH | 2620 | CG42708-RH | 192..2139 | 17..1964 | 9740 | 100 | Plus |
| CG42708-RE | 2711 | CG42708-RE | 93..2015 | 212..2134 | 9615 | 100 | Plus |
| CG42708-RH | 2620 | CG42708-RH | 2344..2516 | 1962..2134 | 865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672587 | 1964..933 | 5160 | 100 | Minus |
| 2R | 25286936 | 2R | 12672664..12673037 | 932..559 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 12673100..12673339 | 558..319 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 211..17 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12671179..12671351 | 2134..1962 | 865 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:31:29 has no hits.
BO16489.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 09:42:14 Download gff for
BO16489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nemy-RA | 188..2305 | 17..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:06 Download gff for
BO16489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 192..2309 | 17..2136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:54 Download gff for
BO16489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 192..2309 | 17..2136 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:54 Download gff for
BO16489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671177..12671349 | 1964..2136 | 98 | <- | Minus |
| 2R | 12671557..12672587 | 933..1963 | 100 | <- | Minus |
| 2R | 12672664..12673037 | 559..932 | 100 | <- | Minus |
| 2R | 12673100..12673339 | 319..558 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 212..318 | 100 | <- | Minus |
| 2R | 12679208..12679402 | 17..211 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:06 Download gff for
BO16489.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560605..8560844 | 319..558 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 212..318 | 100 | <- | Minus |
| arm_2R | 8566713..8566907 | 17..211 | 100 | | Minus |
| arm_2R | 8559062..8560092 | 933..1963 | 100 | <- | Minus |
| arm_2R | 8558682..8558854 | 1964..2136 | 98 | <- | Minus |
| arm_2R | 8560169..8560542 | 559..932 | 100 | <- | Minus |
BO16489.3prime Sequence
647 bp (618 high quality bases) assembled on 2006-10-13
> BO16489.3prime
ATGGTCTAGAAAGCTTGCTAGTCCCGGCTTGGTTTTGTCATCGATGCTGC
TTCCGGCGCTCGCCGTGCTGCCCGCATCCGATGGCACCGGGCTGGACCGT
CCTGATCCTGCCCTGGATCCGGATTCCACGGGAGTGGGAATGGGACTGGT
TGTCGGACTGGTCTCCAGGTCGCTTGTGCTGCAGATTTCCTCATCCGCTT
GTGTCTTGCTGGTCACCGCCTCGGGCTTGCACTCCTCGCTGGACTGGTCG
GCCTTCTCCGCCCAGGAGCGAAGGAACTCCACCACGTGACAGTGGCCGAA
GTTCTCTGCCTCATCCACGGGCAGATTTCCCCAGCGATCCTTGGGGTTGT
GTGGTACATGACACTGTTCCAGCAGGAACTTGACGCACTCCAAGTGTCCT
TCGGACGCAGCCAAATGGAGGGCAGTGCGACCATCGTAGTCGGCCAGAGT
GATATCCATTCCGGAGAGACGATGACGCCGCAAGGCTGTAACATCGCCGC
TGGCAGCTGAAAAGAGTAGATTCACGATGGACAGACCCTTGGTCTCGTAG
CGGTGCTTCCGCGGATCCTTCTTGTTGGACAGATGCTTCAGGTTGTCGTA
GCGATGGAAAATGAACATGGAAACCAGCTCCTCACAAAACTGTAGTC
BO16489.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8772-PF | 2016 | nemy-RF | 1385..2013 | 647..19 | 3095 | 99.6 | Minus |
| CG8772-PD | 2151 | nemy-RD | 1520..2148 | 647..19 | 3095 | 99.6 | Minus |
| CG8772-PA | 2121 | nemy-RA | 1490..2118 | 647..19 | 3095 | 99.6 | Minus |
| CG8772-PE | 1947 | nemy-RE | 1316..1944 | 647..19 | 3095 | 99.6 | Minus |
| CG8772-PC | 1977 | nemy-RC | 1346..1974 | 647..19 | 3095 | 99.6 | Minus |
| CG8772-PB | 2214 | nemy-RB | 1583..2211 | 647..19 | 3095 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RB | 2970 | CG42708-RB | 1646..2274 | 647..19 | 3115 | 99.7 | Minus |
| CG42708-RC | 2741 | CG42708-RC | 1417..2045 | 647..19 | 3115 | 99.7 | Minus |
| CG42708-RE | 2711 | CG42708-RE | 1387..2015 | 647..19 | 3115 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672014 | 189..647 | 2265 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12671179..12671351 | 19..191 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:31:26 has no hits.
BO16489.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:20 Download gff for
BO16489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8772-PB | 1583..2214 | 15..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:15 Download gff for
BO16489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RE | 1387..2027 | 5..647 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:32 Download gff for
BO16489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RE | 1387..2027 | 5..647 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:32 Download gff for
BO16489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671167..12671349 | 5..189 | 97 | <- | Plus |
| 2R | 12671557..12672014 | 190..647 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:15 Download gff for
BO16489.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8558672..8558854 | 5..189 | 97 | <- | Plus |
| arm_2R | 8559062..8559519 | 190..647 | 99 | | Plus |
BO16489.5prime Sequence
587 bp (521 high quality bases) assembled on 2006-10-13
> BO16489.5prime
GAAGTTATCAGTCGACATGCTTAAAGGTGTTCCCACGCTAGCCGGTCGAA
ACCTTCGTCTCCTGACGACCCAGGCACAGGTGCTGGTCCATCAACGCGCC
AAAGCGTCCGCCGCCGAGCCCGTCGAGGACTTTGACCAGGAGACGGATCT
TTTGAAGCGCGCCAAGTTCGGACACACGGGCAAACAGCTGCAGCAGAAAA
TAATCAATGAGAAAAATCTGCGCGCTCCACCGCTTATGAACTTGGTGTTT
GCCAATCGGAAGTTGTCCTTCTACGATACCAGTTCCACTCCCAAGACCAA
AGAGGATAATGCCAAGCTCCATCGCGAGCAGGAGCAGCGAAATGCGGAGG
ATGTGCTATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATG
GGCAAGTTCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCC
GCGAGTGCGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATA
ACTACGAGACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACC
TTCAAGGCTGTGGTTGCCCCCAATATTGTGCTGATTT
BO16489.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8772-PA | 2121 | nemy-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
| CG8772-PE | 1947 | nemy-RE | 22..396 | 212..586 | 1875 | 100 | Plus |
| CG8772-PD | 2151 | nemy-RD | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG8772-PD | 2151 | nemy-RD | 333..600 | 319..586 | 1340 | 100 | Plus |
| CG8772-PC | 1977 | nemy-RC | 159..426 | 319..586 | 1340 | 100 | Plus |
| CG8772-PF | 2016 | nemy-RF | 198..465 | 319..586 | 1340 | 100 | Plus |
| CG8772-PB | 2214 | nemy-RB | 396..663 | 319..586 | 1340 | 100 | Plus |
| CG8772-PC | 1977 | nemy-RC | 22..129 | 212..319 | 540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RH | 2620 | CG42708-RH | 192..761 | 17..586 | 2850 | 100 | Plus |
| CG42708-RA | 3005 | CG42708-RA | 192..761 | 17..586 | 2850 | 100 | Plus |
| CG42708-RJ | 2303 | CG42708-RJ | 70..444 | 212..586 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12673100..12673339 | 558..319 | 1200 | 100 | Minus |
| 2R | 25286936 | 2R | 12679208..12679402 | 211..17 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 12676125..12676233 | 318..210 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:15:13 has no hits.
BO16489.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:21 Download gff for
BO16489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8772-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:31:44 Download gff for
BO16489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..761 | 11..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:47:36 Download gff for
BO16489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RA | 186..761 | 11..587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:47:36 Download gff for
BO16489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12673009..12673037 | 559..587 | 96 | <- | Minus |
| 2R | 12673100..12673339 | 319..558 | 100 | <- | Minus |
| 2R | 12676125..12676231 | 212..318 | 100 | <- | Minus |
| 2R | 12679208..12679408 | 11..211 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:31:44 Download gff for
BO16489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8560514..8560542 | 559..587 | 96 | <- | Minus |
| arm_2R | 8560605..8560844 | 319..558 | 100 | <- | Minus |
| arm_2R | 8563630..8563736 | 212..318 | 100 | <- | Minus |
| arm_2R | 8566713..8566913 | 11..211 | 98 | | Minus |
BO16489.pep Sequence
Translation from 16 to 2152
> BO16489.pep
MLKGVPTLAGRNLRLLTTQAQVLVHQRAKASAAEPVEDFDQETDLLKRAK
FGHTGKQLQQKIINEKNLRAPPLMNLVFANRKLSFYDTSSTPKTKEDNAK
LHREQEQRNAEDVLFDMFASEETGLISMGKFLAGLKTTGIRRNDPRVREL
MDNLKKVHKLNNYETGSSAETQHLNRETFKAVVAPNIVLIAKAFRQQFVI
PDFTSFVKDIEDIYNRCKTNTLGKLADYIPQLARYNPDSWGLSICTIDGQ
RFSIGDVDVPFTLQSCSKPLTYAIALEKLGPKVVHSYVGQEPSGRNFNEL
VLDQNKKPHNPMINAGAILTCSLMNALVKPDMTSAEIFDYTMSWFKRLSG
GEYIGFNNAVFLSEREAADRNYALGFYMRENKCFPKRTNLKEVMDFYFQC
CSMETNCEAMSVIAASLANGGICPTTEEKVFRPEVIRDVLSIMHSCGTYD
YSGQFAFKVGLPAKSGVSGGMMLVIPNVMGIFAWSPPLDHLGNTVRGLQF
CEELVSMFNFHRYDNLKHLSNKKDPRKHRYETKGLSIVNLLFSAASGDVT
ALRRHRLSGMDITLADYDGRTALHLAASEGHLECVKFLLEQCHVPHNPKD
RWGNLPVDEAENFGHCHVVEFLRSWAEKADQSSEECKPEAVTSKTQADEE
ICSTSDLETSPTTSPIPTPVESGSRAGSGRSSPVPSDAGSTASAGSSIDD
KTKPGLASFLDH
BO16489.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-PA | 706 | CG8772-PA | 1..706 | 1..706 | 3699 | 100 | Plus |
| CG42708-PD | 716 | CG8772-PD | 1..716 | 1..706 | 3678 | 98.6 | Plus |
| CG42708-PH | 775 | CG8772-PH | 1..696 | 1..700 | 3454 | 95.1 | Plus |
| CG42708-PE | 648 | CG8772-PE | 8..648 | 66..706 | 3376 | 100 | Plus |
| CG42708-PC | 658 | CG8772-PC | 8..658 | 66..706 | 3355 | 98.5 | Plus |
| CG42708-PH | 775 | CG8772-PH | 718..775 | 649..706 | 290 | 98.3 | Plus |
