Clone Sequence Records
BO16509.3prime Sequence
362 bp (362 high quality bases) assembled on 2006-10-13
> BO16509.3prime
ATGGTCTAGAAAGCTTGCGCGCAGGATATTCCTGTCCACATTCGGCTGCT
CCTTGCCACCGGTAATTGCCTTCACGAATTCCGGGTAATGCAGCAGGCCA
TCGTTATTGTCGTCGGCAATCAGCAGAAATTTATCAATTGCCTCTATAAA
GTGCTCCAGCTCATCGGTGGCATTTTGTAGGTATGCATCCCGCTCGTTGT
TTTTGAAATAGTCATAGTTATGATGCATGGCAGACTGAATCATTTCGAGG
CCGTCCAGTGCATTGTTATTATCATTGTCATGGGCCTTAAACATATAGAA
GATTTTCTCCTCCTCACTCAAATCATCTAAATTTGCCTGGACGCCCATGT
CGACTGATAACT
BO16509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 516 | CG12817-RB | 181..513 | 351..19 | 1665 | 100 | Minus |
CG12817-PA | 333 | CG12817-RA | 1..330 | 348..19 | 1650 | 100 | Minus |
CG12817-PC | 270 | CG12817-RC | 181..246 | 351..286 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..582 | 351..19 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 144..287 | 720 | 100 | Plus |
3R | 32079331 | 3R | 10223918..10224048 | 19..149 | 640 | 99.2 | Plus |
3R | 32079331 | 3R | 10224350..10224416 | 285..351 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 16:32:25 has no hits.
BO16509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:38 Download gff for
BO16509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-PB | 179..516 | 15..355 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:32:01 Download gff for
BO16509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 15..355 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:01:49 Download gff for
BO16509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 15..355 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:01:49 Download gff for
BO16509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10224351..10224418 | 286..355 | 97 | | Plus |
3R | 10223915..10224042 | 15..143 | 98 | <- | Plus |
3R | 10224151..10224292 | 144..285 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:32:01 Download gff for
BO16509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049637..6049764 | 15..143 | 98 | <- | Plus |
arm_3R | 6049873..6050014 | 144..285 | 100 | <- | Plus |
arm_3R | 6050073..6050140 | 286..355 | 97 | | Plus |
BO16509.5prime Sequence
362 bp (362 high quality bases) assembled on 2006-10-13
> BO16509.5prime
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCGCAA
GCTTTCTAGACC
BO16509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 516 | CG12817-RB | 181..513 | 14..346 | 1665 | 100 | Plus |
CG12817-PA | 333 | CG12817-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
CG12817-PC | 270 | CG12817-RC | 181..246 | 14..79 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:33:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..582 | 14..346 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 221..78 | 720 | 100 | Minus |
3R | 32079331 | 3R | 10223918..10224048 | 346..216 | 640 | 99.2 | Minus |
3R | 32079331 | 3R | 10224350..10224416 | 80..14 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:33:43 has no hits.
BO16509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:38 Download gff for
BO16509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-PB | 179..516 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:35:20 Download gff for
BO16509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:04:36 Download gff for
BO16509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 10..350 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:04:36 Download gff for
BO16509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10223915..10224042 | 222..350 | 98 | <- | Minus |
3R | 10224151..10224292 | 80..221 | 100 | <- | Minus |
3R | 10224351..10224418 | 10..79 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:35:20 Download gff for
BO16509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049637..6049764 | 222..350 | 98 | <- | Minus |
arm_3R | 6049873..6050014 | 80..221 | 100 | <- | Minus |
arm_3R | 6050073..6050140 | 10..79 | 97 | | Minus |
BO16509.complete Sequence
364 bp assembled on 2007-10-17
GenBank Submission: FJ633846
> BO16509.complete
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCGCAA
GCTTTCTAGACCAT
BO16509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:44:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 516 | CG12817-PB | 181..513 | 14..346 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..582 | 14..346 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 221..78 | 720 | 100 | Minus |
3R | 32079331 | 3R | 10223918..10224048 | 346..216 | 640 | 99.2 | Minus |
3R | 32079331 | 3R | 10224350..10224416 | 80..14 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:44:53 has no hits.
BO16509.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:10 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 179..516 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:27 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RA | 299..636 | 10..350 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:48 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 253..582 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:26 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RA | 304..633 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:01 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 253..582 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:01 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10223916..10224042 | 222..348 | 98 | <- | Minus |
3R | 10224151..10224292 | 80..221 | 100 | <- | Minus |
3R | 10224351..10224413 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:48 Download gff for
BO16509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049638..6049764 | 222..348 | 98 | <- | Minus |
arm_3R | 6049873..6050014 | 80..221 | 100 | <- | Minus |
arm_3R | 6050073..6050135 | 17..79 | 100 | | Minus |
BO16509.pep Sequence
Translation from 16 to 364
> BO16509.pep
MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN
NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE
QPNVDRNILRASFLDH
BO16509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 171 | CG12817-PB | 62..171 | 1..110 | 584 | 100 | Plus |
CG17271-PA | 281 | CG17271-PA | 155..250 | 1..94 | 162 | 37.5 | Plus |