Clone BO16511 Report

Search the DGRC for BO16511

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:11
Vector:pDNR-Dual
Associated Gene/TranscripteIF-4E-RC
Protein status:BO16511.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO16511.3prime Sequence

668 bp (572 high quality bases) assembled on 2006-10-13

> BO16511.3prime
ATGGTCTAGAAAGCTTGCCAAAGTGTAGATCGATTTCACGTTGGAGCCCT
GCTTGACCATCGTGTCCTTGTGCAACTGATACTGCAGCGAGTTGTTGCGT
CCCAGACGCAGGGCATCGCGCAGCTTGTGACCAATCTCAAGGGCAGCTTC
CTCGTTGTTTCCGTCGGCAGTCCAGATGGATATCTTGTTGCTCTTGCCGC
GAATGTTTATAACAGCGCCGCAGATCTGATCAGAGTGATCGAAGGCCTCA
CCAATCAGGCAGAGCAGCACATCGAGCCATAGGTTATCCAGATCGGTCTT
GGAGCTTTTGTTAAGGGTAATGACCCAACGACCGCCCTGTTTGTTGGCTG
CATCCTCCCACATGGGACGAATGTTCTTCTTGAATAGCGAGTAGTCACTA
CCCAGCTTGATCTCTGATGGGGGCTTGATGTGGTTGTATAGGCTCCAGAA
GTCCTCGACGGTATCGAAGCTGGTGATCTCGTTTTGCATGTCCTCCCAGG
ACTTGGACCGATCGTTTTCAAGGTACCACAGCGTCCAGACATTCATGAGC
GGGTGTTTGTATAAATGCTCGGTGCGCACAGCATCGTCGCCGGGAGGAGC
AGTAATGGTTGCAGTGTTGCCTGCTGGTTCACCAGTCTCCTGTGGGTCCT
CCTTGGGGCTTGACATCC

BO16511.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4035-PA 780 eIF-4E-RA 139..777 657..19 3145 99.6 Minus
CG4035-PG 780 eIF-4E-RG 139..777 657..19 3145 99.6 Minus
CG4035-PE 780 eIF-4E-RE 139..777 657..19 3145 99.6 Minus
CG4035-PF 780 eIF-4E-RF 139..777 657..19 3145 99.6 Minus
CG4035-PB 780 eIF-4E-RB 139..777 657..19 3145 99.6 Minus
CG4035-PC 747 eIF-4E-RC 106..744 657..19 3145 99.6 Minus
CG4035-PD 780 eIF-4E-RD 139..777 657..19 3145 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RI 1793 CG4035-RI 890..1538 668..19 3195 99.5 Minus
eIF-4E-RH 1492 CG4035-RH 589..1237 668..19 3195 99.5 Minus
eIF-4E-RD 1723 CG4035-RD 820..1468 668..19 3195 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9400583..9400882 368..668 1425 99 Plus
3L 28110227 3L 9399873..9400033 19..179 805 100 Plus
3L 28110227 3L 9400419..9400519 268..368 505 100 Plus
3L 28110227 3L 9400097..9400185 180..268 445 100 Plus
X 23542271 X 1158961..1159338 161..538 390 73.5 Plus
3R 32079331 3R 29026520..29026848 170..498 325 73.3 Plus
3L 28110227 3L 6665168..6665336 369..537 290 78.1 Plus
Blast to na_te.dros performed on 2015-02-10 16:30:37 has no hits.

BO16511.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:40 Download gff for BO16511.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4035-PD 129..780 18..668 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:08 Download gff for BO16511.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RD 820..1473 13..668 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:28 Download gff for BO16511.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RD 820..1473 13..668 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:28 Download gff for BO16511.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9399868..9400033 13..179 98 <- Plus
3L 9400097..9400184 180..267 100 <- Plus
3L 9400419..9400518 268..367 100 <- Plus
3L 9400583..9400882 368..668 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:08 Download gff for BO16511.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9393519..9393618 268..367 100 <- Plus
arm_3L 9392968..9393133 13..179 98 <- Plus
arm_3L 9393197..9393284 180..267 100 <- Plus
arm_3L 9393683..9393982 368..668 99   Plus

BO16511.5prime Sequence

610 bp (548 high quality bases) assembled on 2006-10-13

> BO16511.5prime
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGGCAGAGCAACAAGATATC
CCTCTGGACT

BO16511.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4035-PC 747 eIF-4E-RC 1..594 17..610 2895 99.4 Plus
CG4035-PA 780 eIF-4E-RA 58..627 41..610 2775 99.4 Plus
CG4035-PG 780 eIF-4E-RG 58..627 41..610 2775 99.4 Plus
CG4035-PE 780 eIF-4E-RE 58..627 41..610 2775 99.4 Plus
CG4035-PF 780 eIF-4E-RF 58..627 41..610 2775 99.4 Plus
CG4035-PB 780 eIF-4E-RB 58..627 41..610 2775 99.4 Plus
CG4035-PD 780 eIF-4E-RD 58..627 41..610 2775 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 1156 CG4035-RC 157..751 16..610 2930 99.5 Plus
eIF-4E-RI 1793 CG4035-RI 819..1388 41..610 2805 99.5 Plus
eIF-4E-RH 1492 CG4035-RH 518..1087 41..610 2805 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9400583..9400955 411..39 1865 100 Minus
3L 28110227 3L 9400419..9400519 511..411 505 100 Minus
3L 28110227 3L 9400097..9400185 599..511 415 97.8 Minus
X 23542271 X 1159043..1159338 536..241 370 75 Minus
3R 32079331 3R 29026564..29026848 565..281 315 74 Minus
3L 28110227 3L 6665168..6665336 410..242 290 78.1 Minus
Blast to na_te.dros performed on 2015-02-11 17:24:49 has no hits.

BO16511.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:41 Download gff for BO16511.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4035-PC 1..594 17..610 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:20 Download gff for BO16511.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 148..751 9..610 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:41 Download gff for BO16511.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 148..751 9..610 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:41 Download gff for BO16511.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9400097..9400184 512..599 97 <- Minus
3L 9400419..9400518 412..511 100 <- Minus
3L 9400583..9400953 41..411 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:20 Download gff for BO16511.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9393683..9394053 41..411 100 <- Minus
arm_3L 9393197..9393284 512..599 97 <- Minus
arm_3L 9393519..9393618 412..511 100 <- Minus

BO16511.complete Sequence

778 bp assembled on 2006-10-11

GenBank Submission: FJ633847

> BO16511.complete
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGCAAGAGCAACAAGATATC
CATCTGGACTGCCGACGGAAACAACGAGGAAGCTGCCCTTGAGATTGGTC
ACAAGCTGCGCGATGCCCTGCGTCTGGGACGCAACAACTCGCTGCAGTAT
CAGTTGCACAAGGACACGATGGTCAAGCAGGGCTCCAACGTGAAATCGAT
CTACACTTTGGCAAGCTTTCTAGACCAT

BO16511.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 747 CG4035-PC 1..744 17..760 3720 100 Plus
eIF-4E-RI 780 CG4035-PI 58..777 41..760 3600 100 Plus
eIF-4E-RH 780 CG4035-PH 58..777 41..760 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-RC 1156 CG4035-RC 157..901 16..760 3725 100 Plus
eIF-4E-RI 1793 CG4035-RI 819..1538 41..760 3600 100 Plus
eIF-4E-RH 1492 CG4035-RH 518..1237 41..760 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9400583..9400955 411..39 1865 100 Minus
3L 28110227 3L 9399873..9400033 760..600 805 100 Minus
3L 28110227 3L 9400419..9400519 511..411 505 100 Minus
3L 28110227 3L 9400097..9400185 599..511 445 100 Minus
X 23542271 X 1158961..1159338 618..241 390 73.5 Minus
3R 32079331 3R 29026520..29026848 609..281 325 73.3 Minus
3L 28110227 3L 6665168..6665336 410..242 290 78.1 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:01 has no hits.

BO16511.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:15 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:56 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 153..911 9..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:04 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 158..901 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:15 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 153..911 9..766 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:33 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-4E-RC 158..901 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:33 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9399871..9400033 600..762 98 <- Minus
3L 9400097..9400184 512..599 100 <- Minus
3L 9400419..9400518 412..511 100 <- Minus
3L 9400583..9400953 41..411 100 <- Minus
3L 9402280..9402303 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:04 Download gff for BO16511.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9392971..9393133 600..762 98 <- Minus
arm_3L 9393197..9393284 512..599 100 <- Minus
arm_3L 9393519..9393618 412..511 100 <- Minus
arm_3L 9393683..9394053 41..411 100 <- Minus
arm_3L 9395380..9395403 17..40 100   Minus

BO16511.pep Sequence

Translation from 16 to 778

> BO16511.pep
MVVLETEKTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNT
ATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFD
TVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITL
NKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTAD
GNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTLAS
FLDH

BO16511.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-4E-PC 248 CG4035-PC 1..248 1..248 1321 100 Plus
eIF-4E-PI 259 CG4035-PI 19..259 8..248 1289 100 Plus
eIF-4E-PH 259 CG4035-PH 19..259 8..248 1289 100 Plus
eIF-4E-PD 259 CG4035-PD 19..259 8..248 1289 100 Plus
eIF-4E-PB 259 CG4035-PB 19..259 8..248 1289 100 Plus