Clone Sequence Records
BO16511.3prime Sequence
668 bp (572 high quality bases) assembled on 2006-10-13
> BO16511.3prime
ATGGTCTAGAAAGCTTGCCAAAGTGTAGATCGATTTCACGTTGGAGCCCT
GCTTGACCATCGTGTCCTTGTGCAACTGATACTGCAGCGAGTTGTTGCGT
CCCAGACGCAGGGCATCGCGCAGCTTGTGACCAATCTCAAGGGCAGCTTC
CTCGTTGTTTCCGTCGGCAGTCCAGATGGATATCTTGTTGCTCTTGCCGC
GAATGTTTATAACAGCGCCGCAGATCTGATCAGAGTGATCGAAGGCCTCA
CCAATCAGGCAGAGCAGCACATCGAGCCATAGGTTATCCAGATCGGTCTT
GGAGCTTTTGTTAAGGGTAATGACCCAACGACCGCCCTGTTTGTTGGCTG
CATCCTCCCACATGGGACGAATGTTCTTCTTGAATAGCGAGTAGTCACTA
CCCAGCTTGATCTCTGATGGGGGCTTGATGTGGTTGTATAGGCTCCAGAA
GTCCTCGACGGTATCGAAGCTGGTGATCTCGTTTTGCATGTCCTCCCAGG
ACTTGGACCGATCGTTTTCAAGGTACCACAGCGTCCAGACATTCATGAGC
GGGTGTTTGTATAAATGCTCGGTGCGCACAGCATCGTCGCCGGGAGGAGC
AGTAATGGTTGCAGTGTTGCCTGCTGGTTCACCAGTCTCCTGTGGGTCCT
CCTTGGGGCTTGACATCC
BO16511.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4035-PA | 780 | eIF-4E-RA | 139..777 | 657..19 | 3145 | 99.6 | Minus |
CG4035-PG | 780 | eIF-4E-RG | 139..777 | 657..19 | 3145 | 99.6 | Minus |
CG4035-PE | 780 | eIF-4E-RE | 139..777 | 657..19 | 3145 | 99.6 | Minus |
CG4035-PF | 780 | eIF-4E-RF | 139..777 | 657..19 | 3145 | 99.6 | Minus |
CG4035-PB | 780 | eIF-4E-RB | 139..777 | 657..19 | 3145 | 99.6 | Minus |
CG4035-PC | 747 | eIF-4E-RC | 106..744 | 657..19 | 3145 | 99.6 | Minus |
CG4035-PD | 780 | eIF-4E-RD | 139..777 | 657..19 | 3145 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RI | 1793 | CG4035-RI | 890..1538 | 668..19 | 3195 | 99.5 | Minus |
eIF-4E-RH | 1492 | CG4035-RH | 589..1237 | 668..19 | 3195 | 99.5 | Minus |
eIF-4E-RD | 1723 | CG4035-RD | 820..1468 | 668..19 | 3195 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9400583..9400882 | 368..668 | 1425 | 99 | Plus |
3L | 28110227 | 3L | 9399873..9400033 | 19..179 | 805 | 100 | Plus |
3L | 28110227 | 3L | 9400419..9400519 | 268..368 | 505 | 100 | Plus |
3L | 28110227 | 3L | 9400097..9400185 | 180..268 | 445 | 100 | Plus |
X | 23542271 | X | 1158961..1159338 | 161..538 | 390 | 73.5 | Plus |
3R | 32079331 | 3R | 29026520..29026848 | 170..498 | 325 | 73.3 | Plus |
3L | 28110227 | 3L | 6665168..6665336 | 369..537 | 290 | 78.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:30:37 has no hits.
BO16511.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:40 Download gff for
BO16511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4035-PD | 129..780 | 18..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:08 Download gff for
BO16511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RD | 820..1473 | 13..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:28 Download gff for
BO16511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RD | 820..1473 | 13..668 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:28 Download gff for
BO16511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9399868..9400033 | 13..179 | 98 | <- | Plus |
3L | 9400097..9400184 | 180..267 | 100 | <- | Plus |
3L | 9400419..9400518 | 268..367 | 100 | <- | Plus |
3L | 9400583..9400882 | 368..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:08 Download gff for
BO16511.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9393519..9393618 | 268..367 | 100 | <- | Plus |
arm_3L | 9392968..9393133 | 13..179 | 98 | <- | Plus |
arm_3L | 9393197..9393284 | 180..267 | 100 | <- | Plus |
arm_3L | 9393683..9393982 | 368..668 | 99 | | Plus |
BO16511.5prime Sequence
610 bp (548 high quality bases) assembled on 2006-10-13
> BO16511.5prime
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGGCAGAGCAACAAGATATC
CCTCTGGACT
BO16511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4035-PC | 747 | eIF-4E-RC | 1..594 | 17..610 | 2895 | 99.4 | Plus |
CG4035-PA | 780 | eIF-4E-RA | 58..627 | 41..610 | 2775 | 99.4 | Plus |
CG4035-PG | 780 | eIF-4E-RG | 58..627 | 41..610 | 2775 | 99.4 | Plus |
CG4035-PE | 780 | eIF-4E-RE | 58..627 | 41..610 | 2775 | 99.4 | Plus |
CG4035-PF | 780 | eIF-4E-RF | 58..627 | 41..610 | 2775 | 99.4 | Plus |
CG4035-PB | 780 | eIF-4E-RB | 58..627 | 41..610 | 2775 | 99.4 | Plus |
CG4035-PD | 780 | eIF-4E-RD | 58..627 | 41..610 | 2775 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 1156 | CG4035-RC | 157..751 | 16..610 | 2930 | 99.5 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 819..1388 | 41..610 | 2805 | 99.5 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 518..1087 | 41..610 | 2805 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9400583..9400955 | 411..39 | 1865 | 100 | Minus |
3L | 28110227 | 3L | 9400419..9400519 | 511..411 | 505 | 100 | Minus |
3L | 28110227 | 3L | 9400097..9400185 | 599..511 | 415 | 97.8 | Minus |
X | 23542271 | X | 1159043..1159338 | 536..241 | 370 | 75 | Minus |
3R | 32079331 | 3R | 29026564..29026848 | 565..281 | 315 | 74 | Minus |
3L | 28110227 | 3L | 6665168..6665336 | 410..242 | 290 | 78.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:24:49 has no hits.
BO16511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:41 Download gff for
BO16511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4035-PC | 1..594 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:20 Download gff for
BO16511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 148..751 | 9..610 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:41 Download gff for
BO16511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 148..751 | 9..610 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:41 Download gff for
BO16511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9400097..9400184 | 512..599 | 97 | <- | Minus |
3L | 9400419..9400518 | 412..511 | 100 | <- | Minus |
3L | 9400583..9400953 | 41..411 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:20 Download gff for
BO16511.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9393683..9394053 | 41..411 | 100 | <- | Minus |
arm_3L | 9393197..9393284 | 512..599 | 97 | <- | Minus |
arm_3L | 9393519..9393618 | 412..511 | 100 | <- | Minus |
BO16511.complete Sequence
778 bp assembled on 2006-10-11
GenBank Submission: FJ633847
> BO16511.complete
GAAGTTATCAGTCGACATGGTAGTGTTGGAGACGGAGAAGACCAGCGCCC
CCAGCACCGAGCAGGGTCGTCCGGAACCACCAACTTCGGCTGCAGCGCCC
GCCGAGGCTAAGGATGTCAAGCCCAAGGAGGACCCACAGGAGACTGGTGA
ACCAGCAGGCAACACTGCAACCACTACTGCTCCTGCCGGCGACGATGCTG
TGCGCACCGAGCATTTATACAAACACCCGCTCATGAATGTCTGGACGCTG
TGGTACCTTGAAAACGATCGGTCCAAGTCCTGGGAGGACATGCAAAACGA
GATCACCAGCTTCGATACCGTCGAGGACTTCTGGAGCCTATACAACCACA
TCAAGCCCCCATCAGAGATCAAGCTGGGTAGTGACTACTCGCTATTCAAG
AAGAACATTCGTCCCATGTGGGAGGATGCAGCCAACAAACAGGGCGGTCG
TTGGGTCATTACCCTTAACAAAAGCTCCAAGACCGATCTGGATAACCTAT
GGCTCGATGTGCTGCTCTGCCTGATTGGTGAGGCCTTCGATCACTCTGAT
CAGATCTGCGGCGCTGTTATAAACATTCGCGGCAAGAGCAACAAGATATC
CATCTGGACTGCCGACGGAAACAACGAGGAAGCTGCCCTTGAGATTGGTC
ACAAGCTGCGCGATGCCCTGCGTCTGGGACGCAACAACTCGCTGCAGTAT
CAGTTGCACAAGGACACGATGGTCAAGCAGGGCTCCAACGTGAAATCGAT
CTACACTTTGGCAAGCTTTCTAGACCAT
BO16511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 747 | CG4035-PC | 1..744 | 17..760 | 3720 | 100 | Plus |
eIF-4E-RI | 780 | CG4035-PI | 58..777 | 41..760 | 3600 | 100 | Plus |
eIF-4E-RH | 780 | CG4035-PH | 58..777 | 41..760 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-RC | 1156 | CG4035-RC | 157..901 | 16..760 | 3725 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 819..1538 | 41..760 | 3600 | 100 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 518..1237 | 41..760 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9400583..9400955 | 411..39 | 1865 | 100 | Minus |
3L | 28110227 | 3L | 9399873..9400033 | 760..600 | 805 | 100 | Minus |
3L | 28110227 | 3L | 9400419..9400519 | 511..411 | 505 | 100 | Minus |
3L | 28110227 | 3L | 9400097..9400185 | 599..511 | 445 | 100 | Minus |
X | 23542271 | X | 1158961..1159338 | 618..241 | 390 | 73.5 | Minus |
3R | 32079331 | 3R | 29026520..29026848 | 609..281 | 325 | 73.3 | Minus |
3L | 28110227 | 3L | 6665168..6665336 | 410..242 | 290 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:01 has no hits.
BO16511.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:15 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:56 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 153..911 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:04 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 158..901 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:15 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 153..911 | 9..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:33 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-4E-RC | 158..901 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:33 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9399871..9400033 | 600..762 | 98 | <- | Minus |
3L | 9400097..9400184 | 512..599 | 100 | <- | Minus |
3L | 9400419..9400518 | 412..511 | 100 | <- | Minus |
3L | 9400583..9400953 | 41..411 | 100 | <- | Minus |
3L | 9402280..9402303 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:04 Download gff for
BO16511.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9392971..9393133 | 600..762 | 98 | <- | Minus |
arm_3L | 9393197..9393284 | 512..599 | 100 | <- | Minus |
arm_3L | 9393519..9393618 | 412..511 | 100 | <- | Minus |
arm_3L | 9393683..9394053 | 41..411 | 100 | <- | Minus |
arm_3L | 9395380..9395403 | 17..40 | 100 | | Minus |
BO16511.pep Sequence
Translation from 16 to 778
> BO16511.pep
MVVLETEKTSAPSTEQGRPEPPTSAAAPAEAKDVKPKEDPQETGEPAGNT
ATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFD
TVEDFWSLYNHIKPPSEIKLGSDYSLFKKNIRPMWEDAANKQGGRWVITL
NKSSKTDLDNLWLDVLLCLIGEAFDHSDQICGAVINIRGKSNKISIWTAD
GNNEEAALEIGHKLRDALRLGRNNSLQYQLHKDTMVKQGSNVKSIYTLAS
FLDH
BO16511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-4E-PC | 248 | CG4035-PC | 1..248 | 1..248 | 1321 | 100 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 19..259 | 8..248 | 1289 | 100 | Plus |
eIF-4E-PH | 259 | CG4035-PH | 19..259 | 8..248 | 1289 | 100 | Plus |
eIF-4E-PD | 259 | CG4035-PD | 19..259 | 8..248 | 1289 | 100 | Plus |
eIF-4E-PB | 259 | CG4035-PB | 19..259 | 8..248 | 1289 | 100 | Plus |