Clone BO16521 Report

Search the DGRC for BO16521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LB-RC
Protein status:BO16521.pep: validated full length
Sequenced Size:730

Clone Sequence Records

BO16521.3prime Sequence

688 bp (671 high quality bases) assembled on 2006-10-13

> BO16521.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGGCGCAGCTGGCGGGGATTGGTGCG
GCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGCC
GTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCCA
GCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGCA
CCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAAA
ACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCGG
CAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCAT
TGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTAA
ATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATCC
GCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAGT
CCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGACG
TAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCACC
CCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGAT
TCGCCTGCTGCATGTGCTGACTATAGCCCATCATCGAT

BO16521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 27..696 688..19 3350 100 Minus
CG14704-PB 648 PGRP-LB-RB 1..645 663..19 3225 100 Minus
CG14704-PA 648 PGRP-LB-RA 1..645 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 1255 CG14704-RC 425..1094 688..19 3350 100 Minus
PGRP-LB-RD 926 CG14704-RD 106..765 678..19 3300 100 Minus
PGRP-LB-RF 1234 CG14704-RF 415..1073 677..19 3295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453821 309..678 1850 100 Plus
3R 32079331 3R 11453010..11453299 19..308 1450 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:52:05 has no hits.

BO16521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:52 Download gff for BO16521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 27..699 18..688 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:23 Download gff for BO16521.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 425..1100 12..688 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:32 Download gff for BO16521.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 425..1100 12..688 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:32 Download gff for BO16521.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11453004..11453299 12..308 98 <- Plus
3R 11453452..11453821 309..678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:23 Download gff for BO16521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 12..308 98 <- Plus
arm_3R 7279174..7279543 309..678 100   Plus

BO16521.5prime Sequence

728 bp (669 high quality bases) assembled on 2006-10-13

> BO16521.5prime
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCCGCAGCT
GCGCCCAAGGTCGCAAGCTTTCTAGACC

BO16521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14704-PC 699 PGRP-LB-RC 1..696 17..712 3430 99.7 Plus
CG14704-PB 648 PGRP-LB-RB 1..645 68..712 3175 99.6 Plus
CG14704-PA 648 PGRP-LB-RA 1..645 68..712 3175 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 1255 CG14704-RC 397..1094 15..712 3460 99.7 Plus
PGRP-LB-RD 926 CG14704-RD 106..765 53..712 3270 99.7 Plus
PGRP-LB-RF 1234 CG14704-RF 415..1073 54..712 3265 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453821 422..53 1850 100 Minus
3R 32079331 3R 11453010..11453299 712..423 1420 99.3 Minus
3R 32079331 3R 11457585..11457624 54..15 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:02:56 has no hits.

BO16521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:53 Download gff for BO16521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14704-PC 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:33 Download gff for BO16521.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:14 Download gff for BO16521.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:14 Download gff for BO16521.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11457586..11457629 9..53 95   Minus
3R 11453004..11453299 423..719 98 <- Minus
3R 11453452..11453820 54..422 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:33 Download gff for BO16521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278726..7279021 423..719 98 <- Minus
arm_3R 7279174..7279542 54..422 100 <- Minus
arm_3R 7283308..7283351 9..53 95   Minus

BO16521.complete Sequence

730 bp assembled on 2006-10-11

GenBank Submission: FJ633848

> BO16521.complete
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCT
GCGCCCAAGGTCGCAAGCTTTCTAGACCAT

BO16521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 699 CG14704-PC 1..696 17..712 3480 100 Plus
PGRP-LB-RD 768 CG14704-PD 106..765 53..712 3300 100 Plus
PGRP-LB-RF 648 CG14704-PF 1..645 68..712 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-RC 1255 CG14704-RC 397..1094 15..712 3490 100 Plus
PGRP-LB-RD 926 CG14704-RD 106..765 53..712 3300 100 Plus
PGRP-LB-RF 1234 CG14704-RF 415..1073 54..712 3295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11453452..11453821 422..53 1850 100 Minus
3R 32079331 3R 11453010..11453299 712..423 1450 100 Minus
3R 32079331 3R 11457585..11457624 54..15 200 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:44:58 has no hits.

BO16521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:17 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 1..699 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:58 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:32 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 399..1094 17..714 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:17 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 392..1100 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:20 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LB-RC 399..1094 17..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:20 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11453008..11453299 423..714 99 <- Minus
3R 11453452..11453820 54..422 100 <- Minus
3R 11457586..11457622 17..53 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:32 Download gff for BO16521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7278730..7279021 423..714 99 <- Minus
arm_3R 7279174..7279542 54..422 100 <- Minus
arm_3R 7283308..7283344 17..53 100   Minus

BO16521.pep Sequence

Translation from 16 to 730

> BO16521.pep
MTALGLVLLSMMGYSQHMQQANLGDGVATARLLSRSDWGARLPKSVEHFQ
GPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIG
GDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNL
IAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHFTHINDTEG
VSSTTAPVVPHVHPQAAAPQKPHQSPPAAPKVASFLDH

BO16521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LB-PC 232 CG14704-PC 1..232 1..232 1260 100 Plus
PGRP-LB-PD 255 CG14704-PD 31..255 8..232 1208 98.2 Plus
PGRP-LB-PF 215 CG14704-PF 1..215 18..232 1176 100 Plus
PGRP-LB-PE 215 CG14704-PE 1..215 18..232 1176 100 Plus
PGRP-LB-PA 215 CG14704-PA 1..215 18..232 1176 100 Plus