Clone Sequence Records
BO16521.3prime Sequence
688 bp (671 high quality bases) assembled on 2006-10-13
> BO16521.3prime
ATGGTCTAGAAAGCTTGCGACCTTGGGCGCAGCTGGCGGGGATTGGTGCG
GCTTTTGTGGTGCTGCCGCCTGTGGATGGACGTGGGGCACGACGGGCGCC
GTGGTGCTGCTGACGCCTTCGGTGTCGTTTATGTGGGTAAAGTGCGGCCA
GCTGGAGATCTCGGCGAACAGGCGGCCGCCAGGACACTCGGTATCCCGCA
CCTGTCGGTGGCCCAGCAGCTTGTAGGCAGGGTCAATGTAGCCCTTGAAA
ACGCCAAAGGCGATCAGGTTCTTGGCCGCATCCAGCATCTGCTTGGGCGG
CAGTTCGGTTCTCCAATCTCCGATCAGCACAATGCCCACGCTCTTGTCAT
TGTACTTGGGTGCATGAGCTCCGATGACATTGAATCCCCTGCCGGTGTAA
ATCATGCCATCGCCGCCGATGCCAAAGCTATAACCAATATCGTTCCATCC
GCGCTCCAGCTGATGGAAGTCCTGCATGTCCCGCATGCTCTTCATGCAGT
CCGGAGTGGAGTAGCACACGGCCGGCATGTACGAGTGATGGATGATGACG
TAGGGCGCGGGACCCTGGAAGTGCTCCACGGACTTGGGCAGCCGGGCACC
CCAGTCGGATCGGGACAGCAGGCGGGCGGTGGCCACACCGTCGCCCAGAT
TCGCCTGCTGCATGTGCTGACTATAGCCCATCATCGAT
BO16521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 27..696 | 688..19 | 3350 | 100 | Minus |
CG14704-PB | 648 | PGRP-LB-RB | 1..645 | 663..19 | 3225 | 100 | Minus |
CG14704-PA | 648 | PGRP-LB-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 1255 | CG14704-RC | 425..1094 | 688..19 | 3350 | 100 | Minus |
PGRP-LB-RD | 926 | CG14704-RD | 106..765 | 678..19 | 3300 | 100 | Minus |
PGRP-LB-RF | 1234 | CG14704-RF | 415..1073 | 677..19 | 3295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453821 | 309..678 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 11453010..11453299 | 19..308 | 1450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:52:05 has no hits.
BO16521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:52 Download gff for
BO16521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 27..699 | 18..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:23 Download gff for
BO16521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 425..1100 | 12..688 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:32 Download gff for
BO16521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 425..1100 | 12..688 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:32 Download gff for
BO16521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453004..11453299 | 12..308 | 98 | <- | Plus |
3R | 11453452..11453821 | 309..678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:23 Download gff for
BO16521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 12..308 | 98 | <- | Plus |
arm_3R | 7279174..7279543 | 309..678 | 100 | | Plus |
BO16521.5prime Sequence
728 bp (669 high quality bases) assembled on 2006-10-13
> BO16521.5prime
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCCGCAGCT
GCGCCCAAGGTCGCAAGCTTTCTAGACC
BO16521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14704-PC | 699 | PGRP-LB-RC | 1..696 | 17..712 | 3430 | 99.7 | Plus |
CG14704-PB | 648 | PGRP-LB-RB | 1..645 | 68..712 | 3175 | 99.6 | Plus |
CG14704-PA | 648 | PGRP-LB-RA | 1..645 | 68..712 | 3175 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 1255 | CG14704-RC | 397..1094 | 15..712 | 3460 | 99.7 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 106..765 | 53..712 | 3270 | 99.7 | Plus |
PGRP-LB-RF | 1234 | CG14704-RF | 415..1073 | 54..712 | 3265 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453821 | 422..53 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 11453010..11453299 | 712..423 | 1420 | 99.3 | Minus |
3R | 32079331 | 3R | 11457585..11457624 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:02:56 has no hits.
BO16521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:52:53 Download gff for
BO16521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14704-PC | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:33 Download gff for
BO16521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:14 Download gff for
BO16521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:14 Download gff for
BO16521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11457586..11457629 | 9..53 | 95 | | Minus |
3R | 11453004..11453299 | 423..719 | 98 | <- | Minus |
3R | 11453452..11453820 | 54..422 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:33 Download gff for
BO16521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278726..7279021 | 423..719 | 98 | <- | Minus |
arm_3R | 7279174..7279542 | 54..422 | 100 | <- | Minus |
arm_3R | 7283308..7283351 | 9..53 | 95 | | Minus |
BO16521.complete Sequence
730 bp assembled on 2006-10-11
GenBank Submission: FJ633848
> BO16521.complete
GAAGTTATCAGTCGACATGACAGCACTGGGATTAGTTCTGCTATCGATGA
TGGGCTATAGTCAGCACATGCAGCAGGCGAATCTGGGCGACGGTGTGGCC
ACCGCCCGCCTGCTGTCCCGATCCGACTGGGGTGCCCGGCTGCCCAAGTC
CGTGGAGCACTTCCAGGGTCCCGCGCCCTACGTCATCATCCATCACTCGT
ACATGCCGGCCGTGTGCTACTCCACTCCGGACTGCATGAAGAGCATGCGG
GACATGCAGGACTTCCATCAGCTGGAGCGCGGATGGAACGATATTGGTTA
TAGCTTTGGCATCGGCGGCGATGGCATGATTTACACCGGCAGGGGATTCA
ATGTCATCGGAGCTCATGCACCCAAGTACAATGACAAGAGCGTGGGCATT
GTGCTGATCGGAGATTGGAGAACCGAACTGCCGCCCAAGCAGATGCTGGA
TGCGGCCAAGAACCTGATCGCCTTTGGCGTTTTCAAGGGCTACATTGACC
CTGCCTACAAGCTGCTGGGCCACCGACAGGTGCGGGATACCGAGTGTCCT
GGCGGCCGCCTGTTCGCCGAGATCTCCAGCTGGCCGCACTTTACCCACAT
AAACGACACCGAAGGCGTCAGCAGCACCACGGCGCCCGTCGTGCCCCACG
TCCATCCACAGGCGGCAGCACCACAAAAGCCGCACCAATCCCCGCCAGCT
GCGCCCAAGGTCGCAAGCTTTCTAGACCAT
BO16521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 699 | CG14704-PC | 1..696 | 17..712 | 3480 | 100 | Plus |
PGRP-LB-RD | 768 | CG14704-PD | 106..765 | 53..712 | 3300 | 100 | Plus |
PGRP-LB-RF | 648 | CG14704-PF | 1..645 | 68..712 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-RC | 1255 | CG14704-RC | 397..1094 | 15..712 | 3490 | 100 | Plus |
PGRP-LB-RD | 926 | CG14704-RD | 106..765 | 53..712 | 3300 | 100 | Plus |
PGRP-LB-RF | 1234 | CG14704-RF | 415..1073 | 54..712 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11453452..11453821 | 422..53 | 1850 | 100 | Minus |
3R | 32079331 | 3R | 11453010..11453299 | 712..423 | 1450 | 100 | Minus |
3R | 32079331 | 3R | 11457585..11457624 | 54..15 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:44:58 has no hits.
BO16521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:17 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 1..699 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:58 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:32 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 399..1094 | 17..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:17 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 392..1100 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:20 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LB-RC | 399..1094 | 17..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:20 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11453008..11453299 | 423..714 | 99 | <- | Minus |
3R | 11453452..11453820 | 54..422 | 100 | <- | Minus |
3R | 11457586..11457622 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:32 Download gff for
BO16521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7278730..7279021 | 423..714 | 99 | <- | Minus |
arm_3R | 7279174..7279542 | 54..422 | 100 | <- | Minus |
arm_3R | 7283308..7283344 | 17..53 | 100 | | Minus |
BO16521.pep Sequence
Translation from 16 to 730
> BO16521.pep
MTALGLVLLSMMGYSQHMQQANLGDGVATARLLSRSDWGARLPKSVEHFQ
GPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIGYSFGIG
GDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNL
IAFGVFKGYIDPAYKLLGHRQVRDTECPGGRLFAEISSWPHFTHINDTEG
VSSTTAPVVPHVHPQAAAPQKPHQSPPAAPKVASFLDH
BO16521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LB-PC | 232 | CG14704-PC | 1..232 | 1..232 | 1260 | 100 | Plus |
PGRP-LB-PD | 255 | CG14704-PD | 31..255 | 8..232 | 1208 | 98.2 | Plus |
PGRP-LB-PF | 215 | CG14704-PF | 1..215 | 18..232 | 1176 | 100 | Plus |
PGRP-LB-PE | 215 | CG14704-PE | 1..215 | 18..232 | 1176 | 100 | Plus |
PGRP-LB-PA | 215 | CG14704-PA | 1..215 | 18..232 | 1176 | 100 | Plus |