Clone Sequence Records
BO16531.5prime Sequence
434 bp (434 high quality bases) assembled on 2006-10-13
> BO16531.5prime
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGGCAAGCTTTCTAGACC
BO16531.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 405 | CG17490-RC | 1..402 | 17..418 | 2010 | 100 | Plus |
CG17490-PB | 2145 | CG17490-RB | 1662..2036 | 19..393 | 1875 | 100 | Plus |
CG17490-PD | 312 | CG17490-RD | 1..309 | 110..418 | 1545 | 100 | Plus |
CG17490-PA | 393 | CG17490-RA | 1..284 | 110..393 | 1420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1394 | CG17490-RC | 124..525 | 17..418 | 2010 | 100 | Plus |
CG17490-RD | 1342 | CG17490-RD | 51..457 | 12..418 | 2005 | 99.5 | Plus |
CG17490-RF | 2953 | CG17490-RF | 1665..2039 | 19..393 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539952..22540324 | 19..391 | 1865 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 272..231 | 108 | 76.2 | Minus |
BO16531.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:06 Download gff for
BO16531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-PC | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:45 Download gff for
BO16531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 5..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:22 Download gff for
BO16531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 5..424 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:22 Download gff for
BO16531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539950..22540324 | 16..391 | 99 | -> | Plus |
2L | 22547540..22547572 | 392..424 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:45 Download gff for
BO16531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22432682..22433056 | 16..391 | 99 | -> | Plus |
arm_2L | 22440272..22440304 | 392..424 | 93 | | Plus |
BO16531.3prime Sequence
434 bp (434 high quality bases) assembled on 2006-10-13
> BO16531.3prime
ATGGTCTAGAAAGCTTGCCGTTTTCCGGTCAGTTTCCCACCTTCTCATTA
TTGTATGAAAGGTCATGTCATAATTTTTGGATGCAGATTCCAGTTGATCC
GAGTTTAGAATAATATGTTGCTTAAAATAGTAAATCGCTGAAGCATCTTT
ACTTTCCAACATTCCATTTAAATGGAATTGCAACTTTTCGTTTATAAAAT
GCAATTTACAATAGTCATTGTGAATGGAGACGGCATTGCAAAATAGATCC
GCTATATTGGGAAAAGTGAATTGACTTCCAAGACTGCTGACCTGCCTGAT
TTTTGGTATACTTGGTTTCCTTTCCATAAATTGCTTATTGTTCAACCTGT
ATTTCGCAGGTACTATTCTTCCACTGAAAATTGCTCGGAATGTATTTCCA
CAACTTTCTACCGGTACCATGTCGACTGATAACT
BO16531.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 405 | CG17490-RC | 1..402 | 420..19 | 2010 | 100 | Minus |
CG17490-PB | 2145 | CG17490-RB | 1662..2036 | 418..44 | 1875 | 100 | Minus |
CG17490-PD | 312 | CG17490-RD | 1..309 | 327..19 | 1545 | 100 | Minus |
CG17490-PA | 393 | CG17490-RA | 1..284 | 327..44 | 1420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1394 | CG17490-RC | 124..525 | 420..19 | 2010 | 100 | Minus |
CG17490-RD | 1342 | CG17490-RD | 51..457 | 425..19 | 2005 | 99.5 | Minus |
CG17490-RF | 2953 | CG17490-RF | 1665..2039 | 418..44 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539952..22540324 | 418..46 | 1865 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 06:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 165..206 | 108 | 76.2 | Plus |
BO16531.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:06 Download gff for
BO16531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-PC | 1..405 | 15..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:37 Download gff for
BO16531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 13..432 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:16 Download gff for
BO16531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 116..531 | 13..432 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:16 Download gff for
BO16531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539950..22540324 | 46..421 | 99 | -> | Minus |
2L | 22547540..22547572 | 13..45 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:37 Download gff for
BO16531.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22432682..22433056 | 46..421 | 99 | -> | Minus |
arm_2L | 22440272..22440304 | 13..45 | 93 | | Minus |
BO16531.complete Sequence
436 bp assembled on 2006-10-11
GenBank Submission: FJ633850
> BO16531.complete
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGGCAAGCTTTCTAGACCAT
BO16531.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 405 | CG17490-PC | 1..402 | 17..418 | 2010 | 100 | Plus |
CG17490-RG | 2124 | CG17490-PG | 1641..2015 | 19..393 | 1875 | 100 | Plus |
CG17490-RE | 2124 | CG17490-PE | 1641..2015 | 19..393 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-RC | 1394 | CG17490-RC | 124..525 | 17..418 | 2010 | 100 | Plus |
CG17490-RD | 1342 | CG17490-RD | 51..457 | 12..418 | 2005 | 99.5 | Plus |
CG17490-RF | 2953 | CG17490-RF | 1665..2039 | 19..393 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22539952..22540324 | 19..391 | 1865 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 15:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dkoe\Gandalf | 979 | Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). | 42..82 | 272..231 | 108 | 76.2 | Minus |
BO16531.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:53 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:38 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 49..464 | 5..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:32 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 124..525 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:54 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 49..464 | 5..424 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:03 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17490-RC | 124..525 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:03 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22539951..22540324 | 17..391 | 99 | -> | Plus |
2L | 22547540..22547566 | 392..420 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:32 Download gff for
BO16531.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22432683..22433056 | 17..391 | 99 | -> | Plus |
arm_2L | 22440272..22440298 | 392..420 | 93 | | Plus |
BO16531.pep Sequence
Translation from 16 to 436
> BO16531.pep
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKTASFLDH
BO16531.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17490-PC | 134 | CG17490-PC | 1..134 | 1..134 | 709 | 100 | Plus |
CG17490-PG | 707 | CG17490-PG | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PE | 707 | CG17490-PE | 548..671 | 2..125 | 652 | 100 | Plus |
CG17490-PD | 103 | CG17490-PD | 1..103 | 32..134 | 546 | 100 | Plus |
CG17490-PF | 130 | CG17490-PF | 1..94 | 32..125 | 494 | 100 | Plus |