Clone BO16531 Report

Search the DGRC for BO16531

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG17490-RC
Protein status:BO16531.pep:
Sequenced Size:436

Clone Sequence Records

BO16531.5prime Sequence

434 bp (434 high quality bases) assembled on 2006-10-13

> BO16531.5prime
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGGCAAGCTTTCTAGACC

BO16531.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 405 CG17490-RC 1..402 17..418 2010 100 Plus
CG17490-PB 2145 CG17490-RB 1662..2036 19..393 1875 100 Plus
CG17490-PD 312 CG17490-RD 1..309 110..418 1545 100 Plus
CG17490-PA 393 CG17490-RA 1..284 110..393 1420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1394 CG17490-RC 124..525 17..418 2010 100 Plus
CG17490-RD 1342 CG17490-RD 51..457 12..418 2005 99.5 Plus
CG17490-RF 2953 CG17490-RF 1665..2039 19..393 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22539952..22540324 19..391 1865 100 Plus
Blast to na_te.dros performed 2015-02-10 21:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 42..82 272..231 108 76.2 Minus

BO16531.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:06 Download gff for BO16531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-PC 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:45 Download gff for BO16531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 5..424 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:22 Download gff for BO16531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 5..424 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:22 Download gff for BO16531.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22539950..22540324 16..391 99 -> Plus
2L 22547540..22547572 392..424 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:45 Download gff for BO16531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22432682..22433056 16..391 99 -> Plus
arm_2L 22440272..22440304 392..424 93   Plus

BO16531.3prime Sequence

434 bp (434 high quality bases) assembled on 2006-10-13

> BO16531.3prime
ATGGTCTAGAAAGCTTGCCGTTTTCCGGTCAGTTTCCCACCTTCTCATTA
TTGTATGAAAGGTCATGTCATAATTTTTGGATGCAGATTCCAGTTGATCC
GAGTTTAGAATAATATGTTGCTTAAAATAGTAAATCGCTGAAGCATCTTT
ACTTTCCAACATTCCATTTAAATGGAATTGCAACTTTTCGTTTATAAAAT
GCAATTTACAATAGTCATTGTGAATGGAGACGGCATTGCAAAATAGATCC
GCTATATTGGGAAAAGTGAATTGACTTCCAAGACTGCTGACCTGCCTGAT
TTTTGGTATACTTGGTTTCCTTTCCATAAATTGCTTATTGTTCAACCTGT
ATTTCGCAGGTACTATTCTTCCACTGAAAATTGCTCGGAATGTATTTCCA
CAACTTTCTACCGGTACCATGTCGACTGATAACT

BO16531.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 405 CG17490-RC 1..402 420..19 2010 100 Minus
CG17490-PB 2145 CG17490-RB 1662..2036 418..44 1875 100 Minus
CG17490-PD 312 CG17490-RD 1..309 327..19 1545 100 Minus
CG17490-PA 393 CG17490-RA 1..284 327..44 1420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1394 CG17490-RC 124..525 420..19 2010 100 Minus
CG17490-RD 1342 CG17490-RD 51..457 425..19 2005 99.5 Minus
CG17490-RF 2953 CG17490-RF 1665..2039 418..44 1875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22539952..22540324 418..46 1865 100 Minus
Blast to na_te.dros performed 2015-02-03 06:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 42..82 165..206 108 76.2 Plus

BO16531.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:06 Download gff for BO16531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-PC 1..405 15..420 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:37 Download gff for BO16531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 13..432 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:16 Download gff for BO16531.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 116..531 13..432 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:16 Download gff for BO16531.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22539950..22540324 46..421 99 -> Minus
2L 22547540..22547572 13..45 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:37 Download gff for BO16531.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22432682..22433056 46..421 99 -> Minus
arm_2L 22440272..22440304 13..45 93   Minus

BO16531.complete Sequence

436 bp assembled on 2006-10-11

GenBank Submission: FJ633850

> BO16531.complete
GAAGTTATCAGTCGACATGGTACCGGTAGAAAGTTGTGGAAATACATTCC
GAGCAATTTTCAGTGGAAGAATAGTACCTGCGAAATACAGGTTGAACAAT
AAGCAATTTATGGAAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAG
CAGTCTTGGAAGTCAATTCACTTTTCCCAATATAGCGGATCTATTTTGCA
ATGCCGTCTCCATTCACAATGACTATTGTAAATTGCATTTTATAAACGAA
AAGTTGCAATTCCATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGC
GATTTACTATTTTAAGCAACATATTATTCTAAACTCGGATCAACTGGAAT
CTGCATCCAAAAATTATGACATGACCTTTCATACAATAATGAGAAGGTGG
GAAACTGACCGGAAAACGGCAAGCTTTCTAGACCAT

BO16531.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 405 CG17490-PC 1..402 17..418 2010 100 Plus
CG17490-RG 2124 CG17490-PG 1641..2015 19..393 1875 100 Plus
CG17490-RE 2124 CG17490-PE 1641..2015 19..393 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RC 1394 CG17490-RC 124..525 17..418 2010 100 Plus
CG17490-RD 1342 CG17490-RD 51..457 12..418 2005 99.5 Plus
CG17490-RF 2953 CG17490-RF 1665..2039 19..393 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22539952..22540324 19..391 1865 100 Plus
Blast to na_te.dros performed 2014-11-27 15:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 42..82 272..231 108 76.2 Minus

BO16531.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:53 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:38 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 49..464 5..424 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:32 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 124..525 17..420 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:54 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 49..464 5..424 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:03 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 124..525 17..420 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:03 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22539951..22540324 17..391 99 -> Plus
2L 22547540..22547566 392..420 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:32 Download gff for BO16531.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22432683..22433056 17..391 99 -> Plus
arm_2L 22440272..22440298 392..420 93   Plus

BO16531.pep Sequence

Translation from 16 to 436

> BO16531.pep
MVPVESCGNTFRAIFSGRIVPAKYRLNNKQFMERKPSIPKIRQVSSLGSQ
FTFPNIADLFCNAVSIHNDYCKLHFINEKLQFHLNGMLESKDASAIYYFK
QHIILNSDQLESASKNYDMTFHTIMRRWETDRKTASFLDH

BO16531.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PC 134 CG17490-PC 1..134 1..134 709 100 Plus
CG17490-PG 707 CG17490-PG 548..671 2..125 652 100 Plus
CG17490-PE 707 CG17490-PE 548..671 2..125 652 100 Plus
CG17490-PD 103 CG17490-PD 1..103 32..134 546 100 Plus
CG17490-PF 130 CG17490-PF 1..94 32..125 494 100 Plus