Clone Sequence Records
BO16533.3prime Sequence
661 bp (659 high quality bases) assembled on 2006-10-13
> BO16533.3prime
ATGGTCTAGAAAGCTTGCGGTATCAACCAGGATGTGCGTGAACAAACTGT
GCATTCGCCGCTCCATTTCCGTGTACACCAGTGAGTTGAGTCCATCCGCG
TGCTGGCGCAGAGTCGCCGATCTCAGCAGTGCCACGCGATTGGCATTCGG
CTGCTCCTGTTTGTGCTTCAGCATGGTGTACTTACTGAACTCCATTGCGA
ATCGGCAAATGTCGATATTCAGGGCCTGCAGGCGCTCGTAGAGGTCATCG
TCCTCTCCGCCCCAGCCGTAATACAGATTGGACATGCCGTTGATCTGCTG
GTACTGGGCGGTGTTGATGGCCACCACGCCGCCGAAAAGACCGCGGTAAG
GCAGTCGGAATCGCCAGTGATCCAGGGCAGAGCTCATGTGCCGTGGACGT
TCGGAGCAGGCATATATTTGACCCGAATTCAGTGGCAGGAGGTCCACGTC
ATGAAGGATGAGGCAGGGAAATCCATACTCCGCAGCCACCTGGGCGCCAA
TGTTGAAGAGCATCGCCCTGTTAAACGGCTTATGATCGAACTGTTCGACC
AGGAAAATCCGATAGTGGATCAGCTGCTGCGGCAGGTAATTGTGCATGTA
CGTGAGGAAGGCGTGCAGCTGCTCCTCCCGCTGCCTGTACGGCACAATGA
TGGCGGTGCTG
BO16533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14517-PA | 972 | beta4GalNAcTB-RA | 327..969 | 661..19 | 3215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 1349 | CG14517-RA | 416..1058 | 661..19 | 3215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29032951..29033593 | 19..661 | 3215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:48:42 has no hits.
BO16533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:09 Download gff for
BO16533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14517-PA | 327..972 | 16..661 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:06 Download gff for
BO16533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 416..1058 | 19..661 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:12 Download gff for
BO16533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 416..1058 | 19..661 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:12 Download gff for
BO16533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29032951..29033593 | 19..661 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:06 Download gff for
BO16533.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24858673..24859315 | 19..661 | 100 | | Plus |
BO16533.5prime Sequence
706 bp (628 high quality bases) assembled on 2006-10-13
> BO16533.5prime
GAAGTTATCAGTCGACATGTTCGTGCGGCTCTGGGTCCGCAGCTTCCATA
AATATGATCTTCTCATCGCCATCGGACTGATCACTCTCATCGTGTACCTG
TGTCTGCCCTTCCGGTTCGCATCGCACTACGACTACATCGAGGAATCAAA
GATCGAGGGGGCTCTGGTGCCGCAGGTGACCAGAAATGTCTCCCAGCAGG
AAGTTTTCGAATGCACCTACTCGGAGATCATTGCCGAAAACCGGTTCGTC
TACCACCTGGCCCATTACCATGACGCGGTGCAGAGGGGCGCGGAGATCCG
TCCTGGCGGCGAGTTCCGTCCGGAAGGATGTCAGGCTCGCTACAGCACCG
CCATCATTGTGCCGTACAGGCAGCGGGAGGAGCAGCTGCACGCCTTCCTC
ACGTACATGCACAATTACCTGCCGCAGCAGCTGATCCACTATCGGATTTT
CCTGGTCGAACAGTTCGATCATAAGCCGTTTAACAGGGCGATGCTCTTCA
ACATTGGCGCCCAGGTGGCTGCGGAGTATGGATTTCCCTGCCTCATCCTT
CATGACGTGGACCTCCTGCCACTGAATTCGGGTCAAATATATGCCTGCTC
CGAACGTCCACGGCACATGAGCTCTGCCCTGGATCACTGGCGATTCCGAC
TGCCTTACCGCGGTCTTTTCGGCGGCGTGGTGGCCATCAACACCGCCCAG
TACCAG
BO16533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14517-PA | 972 | beta4GalNAcTB-RA | 1..690 | 17..706 | 3450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 1349 | CG14517-RA | 90..779 | 17..706 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29033230..29033919 | 706..17 | 3450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:55 has no hits.
BO16533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:10 Download gff for
BO16533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14517-PA | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:09 Download gff for
BO16533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..779 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:36 Download gff for
BO16533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..779 | 17..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:36 Download gff for
BO16533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29033230..29033919 | 17..706 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:09 Download gff for
BO16533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24858952..24859641 | 17..706 | 100 | | Minus |
BO16533.complete Sequence
1003 bp assembled on 2006-10-11
GenBank Submission: FJ633851
> BO16533.complete
GAAGTTATCAGTCGACATGTTCGTGCGGCTCTGGGTCCGCAGCTTCCATA
AATATGATCTTCTCATCGCCATCGGACTGATCACTCTCATCGTGTACCTG
TGTCTGCCCTTCCGGTTCGCATCGCACTACGACTACATCGAGGAATCAAA
GATCGAGGGGGCTCTGGTGCCGCAGGTGACCAGAAATGTCTCCCAGCAGG
AAGTTTTCGAATGCACCTACTCGGAGATCATTGCCGAAAACCGGTTCGTC
TACCACCTGGCCCATTACCATGACGCGGTGCAGAGGGGCGCGGAGATCCG
TCCTGGCGGCGAGTTCCGTCCGGAAGGATGTCAGGCTCGCTACAGCACCG
CCATCATTGTGCCGTACAGGCAGCGGGAGGAGCAGCTGCACGCCTTCCTC
ACGTACATGCACAATTACCTGCCGCAGCAGCTGATCCACTATCGGATTTT
CCTGGTCGAACAGTTCGATCATAAGCCGTTTAACAGGGCGATGCTCTTCA
ACATTGGCGCCCAGGTGGCTGCGGAGTATGGATTTCCCTGCCTCATCCTT
CATGACGTGGACCTCCTGCCACTGAATTCGGGTCAAATATATGCCTGCTC
CGAACGTCCACGGCACATGAGCTCTGCCCTGGATCACTGGCGATTCCGAC
TGCCTTACCGCGGTCTTTTCGGCGGCGTGGTGGCCATCAACACCGCCCAG
TACCAGCAGATCAACGGCATGTCCAATCTGTATTACGGCTGGGGCGGAGA
GGACGATGACCTCTACGAGCGCCTGCAGGCCCTGAATATCGACATTTGCC
GATTCGCAATGGAGTTCAGTAAGTACACCATGCTGAAGCACAAACAGGAG
CAGCCGAATGCCAATCGCGTGGCACTGCTGAGATCGGCGACTCTGCGCCA
GCACGCGGATGGACTCAACTCACTGGTGTACACGGAAATGGAGCGGCGAA
TGCACAGTTTGTTCACGCACATCCTGGTTGATACCGCAAGCTTTCTAGAC
CAT
BO16533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 972 | CG14517-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-RA | 1349 | CG14517-RA | 90..1058 | 17..985 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29032951..29033919 | 985..17 | 4845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:52:27 has no hits.
BO16533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:21 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 1..972 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:01 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..1058 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:24 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 95..1058 | 22..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:21 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 90..1061 | 17..988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:24 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beta4GalNAcTB-RA | 95..1058 | 22..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:24 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29032948..29033914 | 22..987 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:24 Download gff for
BO16533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24858670..24859636 | 22..987 | 99 | | Minus |
BO16533.pep Sequence
Translation from 16 to 1003
> BO16533.pep
MFVRLWVRSFHKYDLLIAIGLITLIVYLCLPFRFASHYDYIEESKIEGAL
VPQVTRNVSQQEVFECTYSEIIAENRFVYHLAHYHDAVQRGAEIRPGGEF
RPEGCQARYSTAIIVPYRQREEQLHAFLTYMHNYLPQQLIHYRIFLVEQF
DHKPFNRAMLFNIGAQVAAEYGFPCLILHDVDLLPLNSGQIYACSERPRH
MSSALDHWRFRLPYRGLFGGVVAINTAQYQQINGMSNLYYGWGGEDDDLY
ERLQALNIDICRFAMEFSKYTMLKHKQEQPNANRVALLRSATLRQHADGL
NSLVYTEMERRMHSLFTHILVDTASFLDH
BO16533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beta4GalNAcTB-PA | 323 | CG14517-PA | 1..323 | 1..323 | 1719 | 100 | Plus |
| beta4GalNAcTA-PA | 403 | CG8536-PA | 163..395 | 91..322 | 551 | 45.5 | Plus |
| beta4GalT7-PA | 322 | CG11780-PA | 75..227 | 109..262 | 273 | 35.9 | Plus |
