Clone Sequence Records
BO16536.3prime Sequence
491 bp (489 high quality bases) assembled on 2006-10-13
> BO16536.3prime
ATGGTCTAGAAAGCTTGCGGACTCAATAGTGTTTTGTATCCAATCAACGT
ACTTGCCCACCAGCGTGTAAACTCCTGGCCATCCGGCCAGACCGCACGGA
GTCGGTCCAAATGACACGACGCCGGCCAGGAAGTAGTAGGTGTTCACCTT
GTTGGTGTCCAAGCCGATGAGCGGTCCCCCGGAGTCACCGCGACAGGAGT
CGACGCCTTCCTTGCCGCCGGCACACATCTGTGTGTCCTCGAGGAGAATG
TCCTGGCTGCTGTAGACGTTCTGGCACTCATCCATCCGGAATCCCTCCAC
GGCTGCCTTCAGCTTGAGGTTGCTGGCCGACAGCTGCTCCGTTTTGCCCC
AGCCGGCCACGTCCATGGTGATGCCGTCGAAGGTGGCCGACCGCAGATTG
ACGTCCAGAGGCAGGCAAATGGGTCGCACAAAGTCGGTGTACTCCACCTG
CTGGGCCAGACGCAGCAGGGCTATGTCGTTGACCTGGTTCT
BO16536.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4920-PA | 1179 | ea-RA | 704..1176 | 491..19 | 2365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RB | 1527 | CG4920-RB | 1005..1477 | 491..19 | 2365 | 100 | Minus |
ea-RA | 1430 | CG4920-RA | 908..1380 | 491..19 | 2365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15329886..15330358 | 491..19 | 2365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:19:27 has no hits.
BO16536.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:12 Download gff for
BO16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4920-PA | 704..1179 | 16..491 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:32:52 Download gff for
BO16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 908..1380 | 19..491 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:43:41 Download gff for
BO16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 908..1380 | 19..491 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:43:41 Download gff for
BO16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15329886..15330358 | 19..491 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:32:52 Download gff for
BO16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11155608..11156080 | 19..491 | 100 | | Minus |
BO16536.5prime Sequence
544 bp (543 high quality bases) assembled on 2006-10-13
> BO16536.5prime
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAAC
BO16536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4920-PA | 1179 | ea-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RA | 1430 | CG4920-RA | 205..732 | 17..544 | 2640 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 363..829 | 78..544 | 2335 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 205..265 | 17..77 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15329180..15329567 | 78..465 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 15329631..15329710 | 465..544 | 400 | 100 | Plus |
3R | 32079331 | 3R | 15328933..15328993 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:19:45 has no hits.
BO16536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:12 Download gff for
BO16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4920-PA | 1..528 | 17..544 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:32:56 Download gff for
BO16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 197..732 | 9..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:46 Download gff for
BO16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 197..732 | 9..544 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:46 Download gff for
BO16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15328925..15328993 | 9..77 | 94 | -> | Plus |
3R | 15329180..15329566 | 78..464 | 100 | -> | Plus |
3R | 15329631..15329710 | 465..544 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:32:56 Download gff for
BO16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11154647..11154715 | 9..77 | 94 | -> | Plus |
arm_3R | 11154902..11155288 | 78..464 | 100 | -> | Plus |
arm_3R | 11155353..11155432 | 465..544 | 100 | | Plus |
BO16536.complete Sequence
1210 bp assembled on 2007-03-23
GenBank Submission: FJ633852
> BO16536.complete
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAG
GCACTGCCCACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGA
CACCAACACTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACT
GCGCGCCACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCC
GACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCG
TCTGGCCCAGCAGGTGGAGTACACCGACTTTGTGCGACCCATTTGCCTGC
CTCTGGACGTCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGAC
GTGGCCGGCTGGGGCAAAACGGAGCAGCTGTCGGCCAGCAACCTCAAGCT
GAAGGCAGCCGTGGAGGGATTCCGGATGGATGAGTGCCAGAACGTCTACA
GCAGCCAGGACATTCTCCTCGAGGACACACAGATGTGTGCCGGCGGCAAG
GAAGGCGTCGACTCCTGTCGCGGTGACTCCGGGGGACCGCTCATCGGCTT
GGACACCAACAAGGTGAACACCTACTACTTCCTGGCCGGCGTCGTGTCAT
TTGGACCGACTCCGTGCGGTCTGGCCGGATGGCCAGGAGTTTACACGCTG
GTGGGCAAGTACGTTGATTGGATACAAAACACTATTGAGTCCGCAAGCTT
TCTAGACCAT
BO16536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RA | 1179 | CG4920-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
ea-RB | 786 | CG4920-PB | 1..783 | 410..1192 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-RA | 1430 | CG4920-RA | 205..1380 | 17..1192 | 5880 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 363..1477 | 78..1192 | 5575 | 100 | Plus |
ea-RB | 1527 | CG4920-RB | 205..265 | 17..77 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15329631..15330358 | 465..1192 | 3640 | 100 | Plus |
3R | 32079331 | 3R | 15329180..15329567 | 78..465 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 15328933..15328993 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:07:56 has no hits.
BO16536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:59 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:54 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 196..1379 | 9..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:49 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 205..1380 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:59 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 196..1379 | 9..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:09 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ea-RA | 205..1380 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:09 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15328933..15328993 | 17..77 | 100 | -> | Plus |
3R | 15329180..15329566 | 78..464 | 100 | -> | Plus |
3R | 15329631..15330358 | 465..1194 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:49 Download gff for
BO16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11154655..11154715 | 17..77 | 100 | -> | Plus |
arm_3R | 11154902..11155288 | 78..464 | 100 | -> | Plus |
arm_3R | 11155353..11156080 | 465..1194 | 99 | | Plus |
BO16536.pep Sequence
Translation from 16 to 1210
> BO16536.pep
MLKPSIICLFLGILAKSSAGQFYFPNEAAQVPNYGRCITPNRERALCIHL
EDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRESSSET
TPPPKPNVTSNSLLPLPGQCGNILSNRIYGGMKTKIDEFPWMALIEYTKS
QGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNP
DCEVDVRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQV
EYTDFVRPICLPLDVNLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVE
GFRMDECQNVYSSQDILLEDTQMCAGGKEGVDSCRGDSGGPLIGLDTNKV
NTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKYVDWIQNTIESASFLDH
BO16536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ea-PA | 392 | CG4920-PA | 1..392 | 1..392 | 2127 | 100 | Plus |
ea-PB | 261 | CG4920-PB | 1..261 | 132..392 | 1416 | 100 | Plus |
MP1-PA | 390 | CG1102-PA | 26..390 | 34..392 | 1000 | 51 | Plus |
MP1-PC | 399 | CG1102-PC | 26..399 | 34..392 | 980 | 49.7 | Plus |
SPE-PA | 400 | CG16705-PA | 9..399 | 9..391 | 843 | 43.5 | Plus |