Clone BO16536 Report

Search the DGRC for BO16536

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptea-RA
Protein status:BO16536.pep: validated full length
Sequenced Size:1210

Clone Sequence Records

BO16536.3prime Sequence

491 bp (489 high quality bases) assembled on 2006-10-13

> BO16536.3prime
ATGGTCTAGAAAGCTTGCGGACTCAATAGTGTTTTGTATCCAATCAACGT
ACTTGCCCACCAGCGTGTAAACTCCTGGCCATCCGGCCAGACCGCACGGA
GTCGGTCCAAATGACACGACGCCGGCCAGGAAGTAGTAGGTGTTCACCTT
GTTGGTGTCCAAGCCGATGAGCGGTCCCCCGGAGTCACCGCGACAGGAGT
CGACGCCTTCCTTGCCGCCGGCACACATCTGTGTGTCCTCGAGGAGAATG
TCCTGGCTGCTGTAGACGTTCTGGCACTCATCCATCCGGAATCCCTCCAC
GGCTGCCTTCAGCTTGAGGTTGCTGGCCGACAGCTGCTCCGTTTTGCCCC
AGCCGGCCACGTCCATGGTGATGCCGTCGAAGGTGGCCGACCGCAGATTG
ACGTCCAGAGGCAGGCAAATGGGTCGCACAAAGTCGGTGTACTCCACCTG
CTGGGCCAGACGCAGCAGGGCTATGTCGTTGACCTGGTTCT

BO16536.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4920-PA 1179 ea-RA 704..1176 491..19 2365 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RB 1527 CG4920-RB 1005..1477 491..19 2365 100 Minus
ea-RA 1430 CG4920-RA 908..1380 491..19 2365 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329886..15330358 491..19 2365 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:19:27 has no hits.

BO16536.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:12 Download gff for BO16536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4920-PA 704..1179 16..491 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:32:52 Download gff for BO16536.3prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 908..1380 19..491 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:43:41 Download gff for BO16536.3prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 908..1380 19..491 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:43:41 Download gff for BO16536.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15329886..15330358 19..491 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:32:52 Download gff for BO16536.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11155608..11156080 19..491 100   Minus

BO16536.5prime Sequence

544 bp (543 high quality bases) assembled on 2006-10-13

> BO16536.5prime
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAAC

BO16536.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4920-PA 1179 ea-RA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1430 CG4920-RA 205..732 17..544 2640 100 Plus
ea-RB 1527 CG4920-RB 363..829 78..544 2335 100 Plus
ea-RB 1527 CG4920-RB 205..265 17..77 305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329180..15329567 78..465 1940 100 Plus
3R 32079331 3R 15329631..15329710 465..544 400 100 Plus
3R 32079331 3R 15328933..15328993 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:19:45 has no hits.

BO16536.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:12 Download gff for BO16536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4920-PA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:32:56 Download gff for BO16536.5prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 197..732 9..544 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:46 Download gff for BO16536.5prime
Subject Subject Range Query Range Percent Splice Strand
ea-RA 197..732 9..544 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:46 Download gff for BO16536.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15328925..15328993 9..77 94 -> Plus
3R 15329180..15329566 78..464 100 -> Plus
3R 15329631..15329710 465..544 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:32:56 Download gff for BO16536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11154647..11154715 9..77 94 -> Plus
arm_3R 11154902..11155288 78..464 100 -> Plus
arm_3R 11155353..11155432 465..544 100   Plus

BO16536.complete Sequence

1210 bp assembled on 2007-03-23

GenBank Submission: FJ633852

> BO16536.complete
GAAGTTATCAGTCGACATGCTAAAGCCATCGATTATCTGCCTCTTTTTGG
GCATTTTGGCGAAATCATCGGCGGGCCAGTTCTACTTCCCCAACGAGGCG
GCCCAGGTGCCCAACTATGGGCGCTGCATAACGCCGAATCGGGAGCGTGC
GCTGTGCATCCATCTGGAGGACTGCAAGTACCTATACGGCCTGCTGACCA
CCACCCCGCTCCGGGACACGGACCGGCTTTACCTGAGTCGCAGCCAGTGC
GGCTATACGAACGGCAAGGTGCTCATCTGCTGTCCGGACCGCTACAGGGA
GAGCTCATCGGAGACGACGCCACCGCCCAAGCCCAATGTAACCAGCAACA
GCCTTCTGCCGCTGCCAGGACAATGCGGCAACATCCTGTCCAATCGCATC
TATGGCGGAATGAAGACCAAGATCGACGAGTTCCCCTGGATGGCTCTAAT
TGAATACACCAAAAGCCAGGGCAAAAAGGGTCACCATTGCGGCGGATCCT
TGATCAGCACAAGATATGTGATCACAGCCTCGCATTGTGTCAACGGAAAG
GCACTGCCCACCGACTGGCGGTTGTCCGGTGTTCGTTTGGGCGAATGGGA
CACCAACACTAATCCCGATTGCGAAGTAGATGTGCGCGGCATGAAGGACT
GCGCGCCACCGCATCTGGACGTGCCCGTGGAGCGTACTATACCCCATCCC
GACTATATACCGGCCTCCAAGAACCAGGTCAACGACATAGCCCTGCTGCG
TCTGGCCCAGCAGGTGGAGTACACCGACTTTGTGCGACCCATTTGCCTGC
CTCTGGACGTCAATCTGCGGTCGGCCACCTTCGACGGCATCACCATGGAC
GTGGCCGGCTGGGGCAAAACGGAGCAGCTGTCGGCCAGCAACCTCAAGCT
GAAGGCAGCCGTGGAGGGATTCCGGATGGATGAGTGCCAGAACGTCTACA
GCAGCCAGGACATTCTCCTCGAGGACACACAGATGTGTGCCGGCGGCAAG
GAAGGCGTCGACTCCTGTCGCGGTGACTCCGGGGGACCGCTCATCGGCTT
GGACACCAACAAGGTGAACACCTACTACTTCCTGGCCGGCGTCGTGTCAT
TTGGACCGACTCCGTGCGGTCTGGCCGGATGGCCAGGAGTTTACACGCTG
GTGGGCAAGTACGTTGATTGGATACAAAACACTATTGAGTCCGCAAGCTT
TCTAGACCAT

BO16536.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1179 CG4920-PA 1..1176 17..1192 5880 100 Plus
ea-RB 786 CG4920-PB 1..783 410..1192 3915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
ea-RA 1430 CG4920-RA 205..1380 17..1192 5880 100 Plus
ea-RB 1527 CG4920-RB 363..1477 78..1192 5575 100 Plus
ea-RB 1527 CG4920-RB 205..265 17..77 305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15329631..15330358 465..1192 3640 100 Plus
3R 32079331 3R 15329180..15329567 78..465 1940 100 Plus
3R 32079331 3R 15328933..15328993 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:07:56 has no hits.

BO16536.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:59 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 1..1179 17..1195 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:54 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 196..1379 9..1192 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:49 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 205..1380 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:59 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 196..1379 9..1192 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:09 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
ea-RA 205..1380 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:09 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15328933..15328993 17..77 100 -> Plus
3R 15329180..15329566 78..464 100 -> Plus
3R 15329631..15330358 465..1194 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:49 Download gff for BO16536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11154655..11154715 17..77 100 -> Plus
arm_3R 11154902..11155288 78..464 100 -> Plus
arm_3R 11155353..11156080 465..1194 99   Plus

BO16536.pep Sequence

Translation from 16 to 1210

> BO16536.pep
MLKPSIICLFLGILAKSSAGQFYFPNEAAQVPNYGRCITPNRERALCIHL
EDCKYLYGLLTTTPLRDTDRLYLSRSQCGYTNGKVLICCPDRYRESSSET
TPPPKPNVTSNSLLPLPGQCGNILSNRIYGGMKTKIDEFPWMALIEYTKS
QGKKGHHCGGSLISTRYVITASHCVNGKALPTDWRLSGVRLGEWDTNTNP
DCEVDVRGMKDCAPPHLDVPVERTIPHPDYIPASKNQVNDIALLRLAQQV
EYTDFVRPICLPLDVNLRSATFDGITMDVAGWGKTEQLSASNLKLKAAVE
GFRMDECQNVYSSQDILLEDTQMCAGGKEGVDSCRGDSGGPLIGLDTNKV
NTYYFLAGVVSFGPTPCGLAGWPGVYTLVGKYVDWIQNTIESASFLDH

BO16536.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
ea-PA 392 CG4920-PA 1..392 1..392 2127 100 Plus
ea-PB 261 CG4920-PB 1..261 132..392 1416 100 Plus
MP1-PA 390 CG1102-PA 26..390 34..392 1000 51 Plus
MP1-PC 399 CG1102-PC 26..399 34..392 980 49.7 Plus
SPE-PA 400 CG16705-PA 9..399 9..391 843 43.5 Plus