Clone Sequence Records
BO16541.3prime Sequence
686 bp (611 high quality bases) assembled on 2006-10-13
> BO16541.3prime
ATGGTCTAGAAAGCTTGCTGCCTTGGACTCGGCCTCGCTGGCGGTGGCCT
GCGATTGGGCATCGCTCGATTTGCCATCGTCGACCTTGCCAAAGACGCAG
CAAGGACACTTCTCCTTGAGGGCCAGGCGATATTTCGGATGGCTGATGCC
GTATACAATTGGATTGTAGCAGGCGGCCGATTTGGCGAAGCAAGCTCCCC
AAATGGTATTCAGTGGTGTAAGGCCCTCGAACTTGAACAGTCCCATGCAG
TTGATGACCAGGTATGGTGTCCACGCCATGAACCACAGCGTGATGGTGAC
CAGAGCCACCTTGGCCAGCTTGCCCTCGGCGCTCTTCTCGGCATCCTCAG
AGGAGCGGAGGGACTTGACATTCATCTTCTTGGCCTGCTCGCGCATGGCC
TTCTCGTGGGCGGAGACAGCAGCAATGATGAACCAGTAAGAGTAGCAGAT
CAGGAACAGCGGAATATAGTACACGAAGATGGAGTAGAAGATCAGGTATG
AGCGTGGGTTCCAGTCGCGTTCCAAGTAGTCAATACCGCACGAGGTCAGG
TTACCCTCCGGCACATACCTGCTCCAGCCGAAGGCGGGCGCCAGGCACCA
AATGCTCGACATGAACCAGATGTAGGCAATCTTGCCCAGGGCCAGCGGAA
TGGTCATCGGCCGGCCGGCCATGCCCTTGACGATCA
BO16541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4550-PA | 1122 | ninaE-RA | 452..1119 | 686..19 | 3340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-RA | 1588 | CG4550-RA | 628..1295 | 686..19 | 3340 | 100 | Minus |
| Rh2-RA | 1365 | CG16740-RA | 647..1128 | 567..86 | 755 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19886740..19887017 | 143..420 | 1390 | 100 | Plus |
| 3R | 32079331 | 3R | 19887075..19887225 | 420..570 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 18900165..18900586 | 567..146 | 670 | 77.3 | Minus |
| 3R | 32079331 | 3R | 19886548..19886673 | 19..144 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 19887397..19887516 | 567..686 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:47:27 has no hits.
BO16541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:16 Download gff for
BO16541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4550-PA | 453..1122 | 15..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:43 Download gff for
BO16541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 629..1305 | 10..685 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:21 Download gff for
BO16541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 629..1305 | 10..685 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:21 Download gff for
BO16541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19886538..19886671 | 10..142 | 97 | <- | Plus |
| 3R | 19886740..19887017 | 143..420 | 100 | <- | Plus |
| 3R | 19887076..19887223 | 421..568 | 100 | <- | Plus |
| 3R | 19887399..19887515 | 569..685 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:43 Download gff for
BO16541.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15712260..15712393 | 10..142 | 97 | <- | Plus |
| arm_3R | 15712462..15712739 | 143..420 | 100 | <- | Plus |
| arm_3R | 15712798..15712945 | 421..568 | 100 | <- | Plus |
| arm_3R | 15713121..15713237 | 569..685 | 100 | | Plus |
BO16541.5prime Sequence
736 bp (664 high quality bases) assembled on 2006-10-13
> BO16541.5prime
GAAGTTATCAGTCGACATGGAGAGCTTTGCAGTAGCAGCCGCGCAACTGG
GGCCACACTTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACG
CCCGACATGGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCAT
GGACCCCATTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCA
TGATTTCCTGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACC
AAATCACTGCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTC
CGACTTTGGCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGT
ATTTCGAGACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGA
CTGGGCTCGGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTC
CCTGGATCGCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGA
CCATTCCGCTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGC
ATTTGGTGCCTGGCGCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGG
TAACCTGACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCAC
GCTCATACCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTC
CTGATCTGCTACTCTTACTGGTTCATCATTGCTGCT
BO16541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4550-PA | 1122 | ninaE-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-RA | 1588 | CG4550-RA | 177..896 | 17..736 | 3600 | 100 | Plus |
| Rh2-RA | 1365 | CG16740-RA | 272..792 | 212..732 | 325 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19887397..19887961 | 587..23 | 2825 | 100 | Minus |
| 3R | 32079331 | 3R | 19887075..19887225 | 734..584 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 18899790..18900310 | 212..732 | 310 | 70.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:25:24 has no hits.
BO16541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:16 Download gff for
BO16541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4550-PA | 1..720 | 17..736 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:25 Download gff for
BO16541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..896 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:29 Download gff for
BO16541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..896 | 9..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:29 Download gff for
BO16541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19887074..19887223 | 586..736 | 99 | <- | Minus |
| 3R | 19887399..19887961 | 23..585 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:25 Download gff for
BO16541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15712796..15712945 | 586..736 | 99 | <- | Minus |
| arm_3R | 15713121..15713683 | 23..585 | 100 | | Minus |
BO16541.complete Sequence
1153 bp assembled on 2006-10-11
GenBank Submission: FJ633853
> BO16541.complete
GAAGTTATCAGTCGACATGGAGAGCTTTGCAGTAGCAGCCGCGCAACTGG
GGCCACACTTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACG
CCCGACATGGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCAT
GGACCCCATTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCA
TGATTTCCTGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACC
AAATCACTGCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTC
CGACTTTGGCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGT
ATTTCGAGACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGA
CTGGGCTCGGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTC
CCTGGATCGCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGA
CCATTCCGCTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGC
ATTTGGTGCCTGGCGCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGG
TAACCTGACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCAC
GCTCATACCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTC
CTGATCTGCTACTCTTACTGGTTCATCATTGCTGCTGTCTCCGCCCACGA
GAAGGCCATGCGCGAGCAGGCCAAGAAGATGAATGTCAAGTCCCTCCGCT
CCTCTGAGGATGCCGAGAAGAGCGCCGAGGGCAAGCTGGCCAAGGTGGCT
CTGGTCACCATCACGCTGTGGTTCATGGCGTGGACACCATACCTGGTCAT
CAACTGCATGGGACTGTTCAAGTTCGAGGGCCTTACACCACTGAATACCA
TTTGGGGAGCTTGCTTCGCCAAATCGGCCGCCTGCTACAATCCAATTGTA
TACGGCATCAGCCATCCGAAATATCGCCTGGCCCTCAAGGAGAAGTGTCC
TTGCTGCGTCTTTGGCAAGGTCGACGATGGCAAATCGAGCGATGCCCAAT
CGCAGGCCACCGCCAGCGAGGCCGAGTCCAAGGCAGCAAGCTTTCTAGAC
CAT
BO16541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-RA | 1122 | CG4550-PA | 1..1119 | 17..1135 | 5595 | 100 | Plus |
| Rh2-RA | 1146 | CG16740-PA | 217..1073 | 212..1068 | 820 | 73 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-RA | 1588 | CG4550-RA | 177..1295 | 17..1135 | 5595 | 100 | Plus |
| Rh2-RA | 1365 | CG16740-RA | 272..1128 | 212..1068 | 820 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19887397..19887961 | 587..23 | 2825 | 100 | Minus |
| 3R | 32079331 | 3R | 19886740..19887017 | 1011..734 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 19887075..19887225 | 734..584 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 18899790..18900586 | 212..1008 | 745 | 72.9 | Plus |
| 3R | 32079331 | 3R | 19886548..19886673 | 1135..1010 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:02:15 has no hits.
BO16541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:30 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 1..1122 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:35 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1305 | 9..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:31 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 177..1295 | 17..1137 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:30 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1305 | 9..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:44 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 177..1295 | 17..1137 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:44 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19886546..19886671 | 1012..1137 | 98 | <- | Minus |
| 3R | 19886740..19887017 | 734..1011 | 100 | <- | Minus |
| 3R | 19887076..19887223 | 586..733 | 100 | <- | Minus |
| 3R | 19887399..19887964 | 17..585 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:31 Download gff for
BO16541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15712268..15712393 | 1012..1137 | 98 | <- | Minus |
| arm_3R | 15712462..15712739 | 734..1011 | 100 | <- | Minus |
| arm_3R | 15712798..15712945 | 586..733 | 100 | <- | Minus |
| arm_3R | 15713121..15713686 | 17..585 | 99 | | Minus |
BO16541.pep Sequence
Translation from 16 to 1153
> BO16541.pep
MESFAVAAAQLGPHFAPLSNGSVVDKVTPDMAHLISPYWNQFPAMDPIWA
KILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIM
ITNTPMMGINLYFETWVLGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ
VIVKGMAGRPMTIPLALGKIAYIWFMSSIWCLAPAFGWSRYVPEGNLTSC
GIDYLERDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMRE
QAKKMNVKSLRSSEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGL
FKFEGLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVFG
KVDDGKSSDAQSQATASEAESKAASFLDH
BO16541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-PA | 373 | CG4550-PA | 1..373 | 1..373 | 1999 | 100 | Plus |
| Rh2-PA | 381 | CG16740-PA | 14..381 | 9..373 | 1370 | 69.6 | Plus |
| Rh6-PB | 369 | CG5192-PB | 7..369 | 13..373 | 1025 | 52.1 | Plus |
| Rh4-PA | 378 | CG9668-PA | 31..378 | 27..374 | 590 | 39.9 | Plus |
| Rh3-PA | 383 | CG10888-PA | 35..383 | 27..374 | 585 | 37.9 | Plus |
