Clone BO16547 Report

Search the DGRC for BO16547

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG17562-RA
Protein status:BO16547.pep: validated full length
Sequenced Size:1531

Clone Sequence Records

BO16547.3prime Sequence

628 bp (538 high quality bases) assembled on 2006-10-13

> BO16547.3prime
ATGGTCTAGAAAGCTTGCGACTAGGATCCTTACCAACGACCACAGTGCTA
GTAGTGCCACAAAGCAAAGGACACCTTGCAGGATATGATGGAGCAGCTTT
AAACGCTTAATGAGCTTCTTGCCCTGTGCAATGGACTCTGGGGTGGGTGC
CTCGTTTCCCAAGAACTGTCTCATGCCACGCAGAGCTTGAACGAAGTATT
CCTTCCAGTTGAGGCTGACCATATCAAAGTAGTATATCCTTCGATCCTCC
TCCGACATCTGCTGCCTCAAGTGATCCGTATTCCGCATGTCAAAGCGCCA
GCTTTTGCAGGCGAATGGGCCCAGGATGCCGAGAGTCTTGTGGATCTTTT
GGTAAACCTTTACTAGTCTGGGCTTCCGGCCACTCAGCCAGAGAGCCAGG
TCAAAAAAGTAGGCTGGCAGGGTGTGATAGAAGAAAGCTGCCAGGGGGAA
GAGCCACGGCACTGTGATGCAGTGGATGAAGGGATACCATATCATCTTTG
TCAGCGGGCAGTTGGTGCGTCCATCGAGAGCATGTCGAATGAACTCCCCG
TGGGTGATCTTGTTCTGCTCAATGGGCGCCAGTTGGTAGATGAGAGGAGT
TTCTTGTGTTCCCATCTCGTTACCTTCC

BO16547.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-PA 1500 CG17562-RA 888..1497 628..19 3050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 988..1597 628..19 3050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16616409..16616933 628..104 2625 100 Minus
3R 32079331 3R 16616992..16617077 104..19 430 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:08:54 has no hits.

BO16547.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:24 Download gff for BO16547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-PA 888..1500 16..628 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:30:41 Download gff for BO16547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 988..1597 19..628 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:36:45 Download gff for BO16547.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 988..1597 19..628 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:36:45 Download gff for BO16547.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16616409..16616933 104..628 100 -> Minus
3R 16616993..16617077 19..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:30:41 Download gff for BO16547.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12442131..12442655 104..628 100 -> Minus
arm_3R 12442715..12442799 19..103 100   Minus

BO16547.5prime Sequence

592 bp (563 high quality bases) assembled on 2006-10-13

> BO16547.5prime
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGAC

BO16547.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-PA 1500 CG17562-RA 1..576 17..592 2880 100 Plus
CG14893-PA 1491 CG14893-RA 343..416 326..399 195 90.5 Plus
CG17560-PA 1500 CG17560-RA 308..351 324..367 170 95.4 Plus
CG30427-PB 1500 CG30427-RB 425..456 429..460 135 96.8 Plus
CG30427-PA 1500 CG30427-RA 425..456 429..460 135 96.8 Plus
CG30427-PD 1500 CG30427-RD 425..456 429..460 135 96.8 Plus
CG30427-PC 1521 CG30427-RC 425..456 429..460 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 101..676 17..592 2880 100 Plus
CG17560-RA 1712 CG17560-RA 32..565 17..550 540 73.9 Plus
CG14893-RB 1688 CG14893-RB 123..606 55..538 415 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16615653..16616040 205..592 1940 100 Plus
3R 32079331 3R 16615409..16615600 17..208 960 100 Plus
3R 32079331 3R 16621289..16621501 326..538 390 78.9 Plus
3R 32079331 3R 16618320..16618621 249..550 385 75.2 Plus
3R 32079331 3R 12392072..12392238 492..326 250 76.6 Minus
Blast to na_te.dros performed on 2015-02-10 17:24:27 has no hits.

BO16547.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:24 Download gff for BO16547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-PA 1..576 17..592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:21:52 Download gff for BO16547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..676 17..592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:05 Download gff for BO16547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..676 17..592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:05 Download gff for BO16547.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16615409..16615597 17..205 100 -> Plus
3R 16615654..16616040 206..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:21:52 Download gff for BO16547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12441131..12441319 17..205 100 -> Plus
arm_3R 12441376..12441762 206..592 100   Plus

BO16547.complete Sequence

1531 bp assembled on 2007-03-23

GenBank Submission: FJ633854

> BO16547.complete
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGA
GCAAGCGCTCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCAC
TGGCGGAGGATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATC
TTCCGACCGGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTG
GATAGACAACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTG
GAGTACTGCGCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTG
CCCGTGGATTATTGTGCCAATTTGACTCTGGCCTGTACCTGGAAGACCAT
TGTGGAAGGTAACGAGATGGGAACACAAGAAACTCCTCTCATCTACCAAC
TGGCGCCCATTGAGCAGAACAAGATCACCCACGGGGAGTTCATTCGACAT
GCTCTCGATGGACGCACCAACTGCCCGCTGACAAAGATGATATGGTATCC
CTTCATCCACTGCATCACAGTGCCGTGGCTCTTCCCCCTGGCAGCTTTCT
TCTATCACACCCTGCCAGCCTACTTTTTTGACCTGGCTCTCTGGCTGAGT
GGCCGGAAGCCCAGACTAGTAAAGGTTTACCAAAAGATCCACAAGACTCT
CGGCATCCTGGGCCCATTCGCCTGCAAAAGCTGGCGCTTTGACATGCGGA
ATACGGATCACTTGAGGCAGCAGATGTCGGAGGAGGATCGAAGGATATAC
TACTTTGATATGGTCAGCCTCAACTGGAAGGAATACTTCGTTCAAGCTCT
GCGTGGCATGAGACAGTTCTTGGGAAACGAGGCACCCACCCCAGAGTCCA
TTGCACAGGGCAAGAAGCTCATTAAGCGTTTAAAGCTGCTCCATCATATC
CTGCAAGGTGTCCTTTGCTTTGTGGCACTACTAGCACTGTGGTCGTTGGT
AAGGATCCTAGTCGCAAGCTTTCTAGACCAT

BO16547.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1500 CG17562-PA 1..1497 17..1513 7485 100 Plus
CG17560-RA 1500 CG17560-PA 1..695 17..711 730 73.7 Plus
CG14893-RB 1533 CG14893-PB 72..900 55..883 470 70.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-RA 1674 CG17562-RA 101..1597 17..1513 7485 100 Plus
CG17560-RA 1712 CG17560-RA 32..726 17..711 730 73.7 Plus
CG14893-RB 1688 CG14893-RB 123..951 55..883 470 70.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16616222..16616933 717..1428 3560 100 Plus
3R 32079331 3R 16615653..16616164 205..716 2560 100 Plus
3R 32079331 3R 16615409..16615600 17..208 960 100 Plus
3R 32079331 3R 16618320..16618782 249..711 575 74.9 Plus
3R 32079331 3R 16616992..16617077 1428..1513 430 100 Plus
3R 32079331 3R 16621289..16621626 326..663 400 74.6 Plus
3R 32079331 3R 12392072..12392238 492..326 250 76.6 Minus
Blast to na_te.dros performed on 2014-11-27 01:47:01 has no hits.

BO16547.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:00 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 1..1500 17..1516 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:56 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 99..1595 17..1513 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:52 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..1597 17..1515 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:01 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 99..1595 17..1513 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:42 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
CG17562-RA 101..1597 17..1515 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:42 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16615409..16615597 17..205 100 -> Plus
3R 16615654..16616164 206..716 100 -> Plus
3R 16616222..16616933 717..1428 100 -> Plus
3R 16616993..16617077 1429..1515 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:52 Download gff for BO16547.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12441131..12441319 17..205 100 -> Plus
arm_3R 12441376..12441886 206..716 100 -> Plus
arm_3R 12441944..12442655 717..1428 100 -> Plus
arm_3R 12442715..12442799 1429..1515 97   Plus

BO16547.pep Sequence

Translation from 16 to 1531

> BO16547.pep
MDTDIQRCFRSKTVFLTGATGFLGKVVIEKLLRTTEVKRIYVLIRPKRGV
EIKDRIITWSKDAVFELLLKSKPEALQRVCPIAGDCLDFDLGISENDRRL
LASEVQIVIHGAATVRFNEPLHVALAINTRATKLMIQLAKEMRQLEAFVH
VSTAFSNCVIYNIKENFYPEHLNCSSDKVLAMAELMSDELLDNMEQALLG
SFPNTYTYTKALAEDVILKEAGGLPLCIFRPAVIIAAHKEPISGWIDNMY
GPMAILFGVARGVLRIATIDHHAEASLVPVDYCANLTLACTWKTIVEGNE
MGTQETPLIYQLAPIEQNKITHGEFIRHALDGRTNCPLTKMIWYPFIHCI
TVPWLFPLAAFFYHTLPAYFFDLALWLSGRKPRLVKVYQKIHKTLGILGP
FACKSWRFDMRNTDHLRQQMSEEDRRIYYFDMVSLNWKEYFVQALRGMRQ
FLGNEAPTPESIAQGKKLIKRLKLLHHILQGVLCFVALLALWSLVRILVA
SFLDH

BO16547.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17562-PA 499 CG17562-PA 1..499 1..499 2611 100 Plus
CG17560-PA 499 CG17560-PA 1..499 1..499 1690 62.9 Plus
CG14893-PB 510 CG14893-PB 12..510 1..499 1673 62.1 Plus
CG10096-PD 502 CG10096-PD 1..502 1..503 1492 56.5 Plus
CG10096-PB 502 CG10096-PB 1..502 1..503 1492 56.5 Plus