Clone Sequence Records
BO16547.3prime Sequence
628 bp (538 high quality bases) assembled on 2006-10-13
> BO16547.3prime
ATGGTCTAGAAAGCTTGCGACTAGGATCCTTACCAACGACCACAGTGCTA
GTAGTGCCACAAAGCAAAGGACACCTTGCAGGATATGATGGAGCAGCTTT
AAACGCTTAATGAGCTTCTTGCCCTGTGCAATGGACTCTGGGGTGGGTGC
CTCGTTTCCCAAGAACTGTCTCATGCCACGCAGAGCTTGAACGAAGTATT
CCTTCCAGTTGAGGCTGACCATATCAAAGTAGTATATCCTTCGATCCTCC
TCCGACATCTGCTGCCTCAAGTGATCCGTATTCCGCATGTCAAAGCGCCA
GCTTTTGCAGGCGAATGGGCCCAGGATGCCGAGAGTCTTGTGGATCTTTT
GGTAAACCTTTACTAGTCTGGGCTTCCGGCCACTCAGCCAGAGAGCCAGG
TCAAAAAAGTAGGCTGGCAGGGTGTGATAGAAGAAAGCTGCCAGGGGGAA
GAGCCACGGCACTGTGATGCAGTGGATGAAGGGATACCATATCATCTTTG
TCAGCGGGCAGTTGGTGCGTCCATCGAGAGCATGTCGAATGAACTCCCCG
TGGGTGATCTTGTTCTGCTCAATGGGCGCCAGTTGGTAGATGAGAGGAGT
TTCTTGTGTTCCCATCTCGTTACCTTCC
BO16547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-PA | 1500 | CG17562-RA | 888..1497 | 628..19 | 3050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1674 | CG17562-RA | 988..1597 | 628..19 | 3050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16616409..16616933 | 628..104 | 2625 | 100 | Minus |
3R | 32079331 | 3R | 16616992..16617077 | 104..19 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:08:54 has no hits.
BO16547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:24 Download gff for
BO16547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-PA | 888..1500 | 16..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:30:41 Download gff for
BO16547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 988..1597 | 19..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:36:45 Download gff for
BO16547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 988..1597 | 19..628 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:36:45 Download gff for
BO16547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16616409..16616933 | 104..628 | 100 | -> | Minus |
3R | 16616993..16617077 | 19..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:30:41 Download gff for
BO16547.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12442131..12442655 | 104..628 | 100 | -> | Minus |
arm_3R | 12442715..12442799 | 19..103 | 100 | | Minus |
BO16547.5prime Sequence
592 bp (563 high quality bases) assembled on 2006-10-13
> BO16547.5prime
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGAC
BO16547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-PA | 1500 | CG17562-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
CG14893-PA | 1491 | CG14893-RA | 343..416 | 326..399 | 195 | 90.5 | Plus |
CG17560-PA | 1500 | CG17560-RA | 308..351 | 324..367 | 170 | 95.4 | Plus |
CG30427-PB | 1500 | CG30427-RB | 425..456 | 429..460 | 135 | 96.8 | Plus |
CG30427-PA | 1500 | CG30427-RA | 425..456 | 429..460 | 135 | 96.8 | Plus |
CG30427-PD | 1500 | CG30427-RD | 425..456 | 429..460 | 135 | 96.8 | Plus |
CG30427-PC | 1521 | CG30427-RC | 425..456 | 429..460 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:24:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1674 | CG17562-RA | 101..676 | 17..592 | 2880 | 100 | Plus |
CG17560-RA | 1712 | CG17560-RA | 32..565 | 17..550 | 540 | 73.9 | Plus |
CG14893-RB | 1688 | CG14893-RB | 123..606 | 55..538 | 415 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16615653..16616040 | 205..592 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 16615409..16615600 | 17..208 | 960 | 100 | Plus |
3R | 32079331 | 3R | 16621289..16621501 | 326..538 | 390 | 78.9 | Plus |
3R | 32079331 | 3R | 16618320..16618621 | 249..550 | 385 | 75.2 | Plus |
3R | 32079331 | 3R | 12392072..12392238 | 492..326 | 250 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:24:27 has no hits.
BO16547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:24 Download gff for
BO16547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:21:52 Download gff for
BO16547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..676 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:05 Download gff for
BO16547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..676 | 17..592 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:05 Download gff for
BO16547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16615409..16615597 | 17..205 | 100 | -> | Plus |
3R | 16615654..16616040 | 206..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:21:52 Download gff for
BO16547.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12441131..12441319 | 17..205 | 100 | -> | Plus |
arm_3R | 12441376..12441762 | 206..592 | 100 | | Plus |
BO16547.complete Sequence
1531 bp assembled on 2007-03-23
GenBank Submission: FJ633854
> BO16547.complete
GAAGTTATCAGTCGACATGGATACGGATATTCAAAGATGCTTCCGGAGCA
AAACGGTGTTCCTAACTGGAGCCACCGGCTTTTTGGGTAAAGTCGTTATT
GAGAAACTTTTGCGGACCACAGAGGTGAAACGCATCTATGTGCTAATTAG
ACCAAAGCGCGGAGTTGAGATTAAGGATCGGATTATCACCTGGTCAAAAG
ATGCGGTATTTGAACTGCTGCTGAAGTCCAAGCCGGAGGCACTTCAAAGA
GTATGTCCCATCGCTGGGGATTGCCTCGACTTTGATTTGGGAATCAGCGA
GAATGATCGAAGACTTCTGGCCTCCGAGGTGCAGATTGTCATCCATGGAG
CTGCCACCGTGCGATTCAATGAGCCGCTTCACGTGGCCCTGGCCATCAAC
ACAAGGGCCACCAAGCTGATGATTCAACTGGCCAAGGAAATGAGGCAGCT
GGAGGCCTTCGTTCATGTATCGACCGCCTTCTCCAACTGCGTTATCTACA
ACATCAAGGAAAATTTCTACCCCGAGCATCTCAACTGCAGTTCCGATAAG
GTGCTTGCAATGGCAGAGCTGATGAGTGACGAGCTACTGGACAACATGGA
GCAAGCGCTCCTTGGCTCGTTTCCCAACACGTACACGTACACCAAAGCAC
TGGCGGAGGATGTGATCCTGAAGGAAGCGGGTGGCTTGCCACTTTGCATC
TTCCGACCGGCAGTCATTATTGCGGCCCACAAGGAACCCATCTCCGGCTG
GATAGACAACATGTACGGACCAATGGCAATTCTTTTCGGGGTGGCCCGTG
GAGTACTGCGCATTGCCACCATCGATCACCATGCCGAGGCAAGCCTGGTG
CCCGTGGATTATTGTGCCAATTTGACTCTGGCCTGTACCTGGAAGACCAT
TGTGGAAGGTAACGAGATGGGAACACAAGAAACTCCTCTCATCTACCAAC
TGGCGCCCATTGAGCAGAACAAGATCACCCACGGGGAGTTCATTCGACAT
GCTCTCGATGGACGCACCAACTGCCCGCTGACAAAGATGATATGGTATCC
CTTCATCCACTGCATCACAGTGCCGTGGCTCTTCCCCCTGGCAGCTTTCT
TCTATCACACCCTGCCAGCCTACTTTTTTGACCTGGCTCTCTGGCTGAGT
GGCCGGAAGCCCAGACTAGTAAAGGTTTACCAAAAGATCCACAAGACTCT
CGGCATCCTGGGCCCATTCGCCTGCAAAAGCTGGCGCTTTGACATGCGGA
ATACGGATCACTTGAGGCAGCAGATGTCGGAGGAGGATCGAAGGATATAC
TACTTTGATATGGTCAGCCTCAACTGGAAGGAATACTTCGTTCAAGCTCT
GCGTGGCATGAGACAGTTCTTGGGAAACGAGGCACCCACCCCAGAGTCCA
TTGCACAGGGCAAGAAGCTCATTAAGCGTTTAAAGCTGCTCCATCATATC
CTGCAAGGTGTCCTTTGCTTTGTGGCACTACTAGCACTGTGGTCGTTGGT
AAGGATCCTAGTCGCAAGCTTTCTAGACCAT
BO16547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1500 | CG17562-PA | 1..1497 | 17..1513 | 7485 | 100 | Plus |
CG17560-RA | 1500 | CG17560-PA | 1..695 | 17..711 | 730 | 73.7 | Plus |
CG14893-RB | 1533 | CG14893-PB | 72..900 | 55..883 | 470 | 70.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-RA | 1674 | CG17562-RA | 101..1597 | 17..1513 | 7485 | 100 | Plus |
CG17560-RA | 1712 | CG17560-RA | 32..726 | 17..711 | 730 | 73.7 | Plus |
CG14893-RB | 1688 | CG14893-RB | 123..951 | 55..883 | 470 | 70.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16616222..16616933 | 717..1428 | 3560 | 100 | Plus |
3R | 32079331 | 3R | 16615653..16616164 | 205..716 | 2560 | 100 | Plus |
3R | 32079331 | 3R | 16615409..16615600 | 17..208 | 960 | 100 | Plus |
3R | 32079331 | 3R | 16618320..16618782 | 249..711 | 575 | 74.9 | Plus |
3R | 32079331 | 3R | 16616992..16617077 | 1428..1513 | 430 | 100 | Plus |
3R | 32079331 | 3R | 16621289..16621626 | 326..663 | 400 | 74.6 | Plus |
3R | 32079331 | 3R | 12392072..12392238 | 492..326 | 250 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:47:01 has no hits.
BO16547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:00 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 1..1500 | 17..1516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:56 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 99..1595 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:52 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..1597 | 17..1515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:01 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 99..1595 | 17..1513 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:42 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17562-RA | 101..1597 | 17..1515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:42 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16615409..16615597 | 17..205 | 100 | -> | Plus |
3R | 16615654..16616164 | 206..716 | 100 | -> | Plus |
3R | 16616222..16616933 | 717..1428 | 100 | -> | Plus |
3R | 16616993..16617077 | 1429..1515 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:52 Download gff for
BO16547.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12441131..12441319 | 17..205 | 100 | -> | Plus |
arm_3R | 12441376..12441886 | 206..716 | 100 | -> | Plus |
arm_3R | 12441944..12442655 | 717..1428 | 100 | -> | Plus |
arm_3R | 12442715..12442799 | 1429..1515 | 97 | | Plus |
BO16547.pep Sequence
Translation from 16 to 1531
> BO16547.pep
MDTDIQRCFRSKTVFLTGATGFLGKVVIEKLLRTTEVKRIYVLIRPKRGV
EIKDRIITWSKDAVFELLLKSKPEALQRVCPIAGDCLDFDLGISENDRRL
LASEVQIVIHGAATVRFNEPLHVALAINTRATKLMIQLAKEMRQLEAFVH
VSTAFSNCVIYNIKENFYPEHLNCSSDKVLAMAELMSDELLDNMEQALLG
SFPNTYTYTKALAEDVILKEAGGLPLCIFRPAVIIAAHKEPISGWIDNMY
GPMAILFGVARGVLRIATIDHHAEASLVPVDYCANLTLACTWKTIVEGNE
MGTQETPLIYQLAPIEQNKITHGEFIRHALDGRTNCPLTKMIWYPFIHCI
TVPWLFPLAAFFYHTLPAYFFDLALWLSGRKPRLVKVYQKIHKTLGILGP
FACKSWRFDMRNTDHLRQQMSEEDRRIYYFDMVSLNWKEYFVQALRGMRQ
FLGNEAPTPESIAQGKKLIKRLKLLHHILQGVLCFVALLALWSLVRILVA
SFLDH
BO16547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17562-PA | 499 | CG17562-PA | 1..499 | 1..499 | 2611 | 100 | Plus |
CG17560-PA | 499 | CG17560-PA | 1..499 | 1..499 | 1690 | 62.9 | Plus |
CG14893-PB | 510 | CG14893-PB | 12..510 | 1..499 | 1673 | 62.1 | Plus |
CG10096-PD | 502 | CG10096-PD | 1..502 | 1..503 | 1492 | 56.5 | Plus |
CG10096-PB | 502 | CG10096-PB | 1..502 | 1..503 | 1492 | 56.5 | Plus |