Clone Sequence Records
BO16548.3prime Sequence
634 bp (521 high quality bases) assembled on 2006-10-13
> BO16548.3prime
ATGGTCTAGAAAGCTTGCATTGTACAGAGCTCTGTCCACTATAATGCCGT
GCTCAATCAGAAAACTCTCGACGTCGGAGGCGAAGAAGTCATCGCTGAGG
TCATCGGTAAGCCGCACAAAGTTTCCGATGACCGCTTGGGCCTTGTATAC
CAGTAGGGCGGGCAATCCTTTGGTGCGGAAGTCCCTGCTCATTCCGGCCA
CGGAACTGCAGATCTTGGCGAACTTAATGGACGGATAATCGCTGGCCAGA
CTGTCAAGGCATTTGTTCAGCGTGGCACAGGCGGCCAATTGTCGTTCGTA
TATGTGGATGATGATGGTGGTGTGCTTGTTCTCCTGCTCGACGCAGGCGA
GGAACTCCTCGTGGCTGGTCAACTGCTGCACCTGGCCAAACTGCTGGTGG
TGCCCCGTCTGGCGCAGCATCTCGGCCATCCGCTGTTTCTGGTACTGCTG
CAGGAAGTCCTCGCTCATCAGTTCGTCCAGCTCGGCGTCCAGTTCCTCCT
GCCGCTTGCGTTCCTCGTCCTCCGCCGACGTTGTCGCCGTAATGGTGAGC
TTCTTGGCCAGCGCCAGACGTTGACGTTCGGTTTCATCCCGTCGCTCCGC
CTCGAGCTGCTTGAATCTCTGCCAGTCCTTTACA
BO16548.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-PA | 831 | CG7650-RA | 213..828 | 634..19 | 3080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-RA | 1680 | CG7650-RA | 315..930 | 634..19 | 3080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15609457..15610072 | 19..634 | 3080 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:52:56 has no hits.
BO16548.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:25 Download gff for
BO16548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-PA | 214..831 | 16..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:34 Download gff for
BO16548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 316..941 | 6..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:42 Download gff for
BO16548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 316..941 | 6..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:42 Download gff for
BO16548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15609446..15610071 | 6..633 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:34 Download gff for
BO16548.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15602546..15603171 | 6..633 | 99 | | Plus |
BO16548.5prime Sequence
653 bp (576 high quality bases) assembled on 2006-10-13
> BO16548.5prime
GAAGTTATCAGTCGACATGGCCACTTTGGAAGACAAACTATTGGGCGAGA
AACTTGAGTACTACTGCAGCAGCAGCGAGGGCGAGGACAATGGTGACGAG
GGAGGCGATAATAAGGGGGCATCCGGGAAATCCCGATGCTCCGGTCTGAC
CATCGACACAAATCCGGATGCGACTCCGGCTGGTGGATTCCGGCAGCAAA
GCTCAACGAACACGGGTCCCAAGGGCGTTGTAAAGGACTGGCAGAGATTC
AAGCAGCTCGAGGCGGAGCGACGGGATGAAACCGAACGTCAACGTCTGGC
GCTGGCCAAGAAGCTCACCATTACGGCGACAACGTCGGCGGAGGACGAGG
AACGCAAGCGGCAGGAGGAACTGGACGCCGAGCTGGACGAACTGATGAGC
GAGGACTTCCTGCAGCAGTACCAGAAACAGCGGATGGCCGAGATGCTGCG
CCAGACGGGGCACCACCAGCAGTTTGGCCAGGTGCAGCAGTTGACCAGCC
ACGAGGAGTTCCTCGCCTGCGTCGAGCAGGAGAACAAGCACACCACCATC
ATCATCCACATATACGAACGACAATTGGCCGCCTGTGCCACGCTGAACAA
ATGCCTTGACAGTCTGGCCAGCGGATATCCGTCCATTAAGTTCGCCAAGA
TCT
BO16548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-PA | 831 | CG7650-RA | 1..637 | 17..653 | 3135 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-RA | 1680 | CG7650-RA | 102..739 | 16..653 | 3160 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15609648..15610285 | 653..16 | 3160 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:48:11 has no hits.
BO16548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:26 Download gff for
BO16548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-PA | 1..637 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:48 Download gff for
BO16548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 98..739 | 9..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:24 Download gff for
BO16548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 98..739 | 9..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:24 Download gff for
BO16548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15609648..15610289 | 15..653 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:48 Download gff for
BO16548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15602748..15603389 | 15..653 | 99 | -> | Minus |
BO16548.complete Sequence
862 bp assembled on 2006-10-11
GenBank Submission: FJ633855
> BO16548.complete
GAAGTTATCAGTCGACATGGCCACTTTGGAAGACAAACTATTGGGCGAGA
AACTTGAGTACTACTGCAGCAGCAGCGAGGGCGAGGACAATGGTGACGAG
GGAGGCGATAATAAGGGGGCATCCGGGAAATCCCGATGCTCCGGTCTGAC
CATCGACACAAATCCGGATGCGACTCCGGCTGGTGGATTCCGGCAGCAAA
GCTCAACGAACACGGGTCCCAAGGGCGTTGTAAAGGACTGGCAGAGATTC
AAGCAGCTCGAGGCGGAGCGACGGGATGAAACCGAACGTCAACGTCTGGC
GCTGGCCAAGAAGCTCACCATTACGGCGACAACGTCGGCGGAGGACGAGG
AACGCAAGCGGCAGGAGGAACTGGACGCCGAGCTGGACGAACTGATGAGC
GAGGACTTCCTGCAGCAGTACCAGAAACAGCGGATGGCCGAGATGCTGCG
CCAGACGGGGCACCACCAGCAGTTTGGCCAGGTGCAGCAGTTGACCAGCC
ACGAGGAGTTCCTCGCCTGCGTCGAGCAGGAGAACAAGCACACCACCATC
ATCATCCACATATACGAACGACAATTGGCCGCCTGTGCCACGCTGAACAA
ATGCCTTGACAGTCTGGCCAGCGATTATCCGTCCATTAAGTTCGCCAAGA
TCTGCAGTTCCGTGGCCGGAATGAGCAGGGACTTCCGCACCAAAGGATTG
CCCGCCCTACTGGTATACAAGGCCCAAGCGGTCATCGGAAACTTTGTGCG
GCTTACCGATGACCTCAGCGATGACTTCTTCGCCTCCGACGTCGAGAGTT
TTCTGATTGAGCACGGCATTATAGTGGACAGAGCTCTGTACAATGCAAGC
TTTCTAGACCAT
BO16548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-RA | 831 | CG7650-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-RA | 1680 | CG7650-RA | 102..930 | 16..844 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15609457..15610285 | 844..16 | 4145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:18:19 has no hits.
BO16548.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:32 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:36 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 100..935 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:53:39 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 103..930 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:32 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 100..935 | 9..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:07 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7650-RA | 103..930 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:07 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15609454..15610284 | 17..846 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:53:39 Download gff for
BO16548.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15602554..15603384 | 17..846 | 99 | | Minus |
BO16548.pep Sequence
Translation from 16 to 862
> BO16548.pep
MATLEDKLLGEKLEYYCSSSEGEDNGDEGGDNKGASGKSRCSGLTIDTNP
DATPAGGFRQQSSTNTGPKGVVKDWQRFKQLEAERRDETERQRLALAKKL
TITATTSAEDEERKRQEELDAELDELMSEDFLQQYQKQRMAEMLRQTGHH
QQFGQVQQLTSHEEFLACVEQENKHTTIIIHIYERQLAACATLNKCLDSL
ASDYPSIKFAKICSSVAGMSRDFRTKGLPALLVYKAQAVIGNFVRLTDDL
SDDFFASDVESFLIEHGIIVDRALYNASFLDH
BO16548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7650-PA | 276 | CG7650-PA | 1..276 | 1..276 | 1418 | 100 | Plus |
| viaf-PA | 240 | CG18593-PA | 65..212 | 117..269 | 152 | 26.8 | Plus |
