Clone Sequence Records
BO16550.5prime Sequence
446 bp (446 high quality bases) assembled on 2006-10-13
> BO16550.5prime
GAAGTTATCAGTCGACATGGCCATCGCCTATTTCATACCCGACCAGGCCC
AATTGTTGGCCAGAAGCTATCAGCAAAACGGCCAGCAGACAGCAGCGAGT
CCAAGGACAACTGCAACAGCTGCTGCACCATCGCAGCAGCAGCAACAATC
GCAACAACAGCAGCAGCAGCAGCGACATCATCATCAGCAACAGCGCCCAC
AATTCCGTGCCAATATTTCCGTGCCGCTGGGAAGTCAACAGGGATCGATG
ACCATGTCGGAGTTTGGATGCTGGGATCTTTTGGCCCAGATCTTCTGCTA
CGCTCTGCGAATCTACAGCTACAGTTCGAGCCAGCGTCAACCGACGGTCA
TTCAGATATCCTTCGAGATCAGCAGCGGCGGTCAGAACAACGATGAGGAC
GACGTGACTGATGCCACCTCCAAGGAGAACGCAAGCTTTCTAGACC
BO16550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4345-PA | 417 | grim-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grim-RA | 1699 | CG4345-RA | 318..732 | 16..430 | 2075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18303686..18304100 | 430..16 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:02:36 has no hits.
BO16550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:28 Download gff for
BO16550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4345-PA | 1..417 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:17 Download gff for
BO16550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 311..739 | 7..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:06 Download gff for
BO16550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 311..739 | 7..439 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:06 Download gff for
BO16550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18303679..18304107 | 7..439 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:17 Download gff for
BO16550.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18296779..18297207 | 7..439 | 98 | | Minus |
BO16550.3prime Sequence
446 bp (446 high quality bases) assembled on 2006-10-13
> BO16550.3prime
ATGGTCTAGAAAGCTTGCGCCCTCCTTGGAGGTGGCATCAGTCACGTCGT
CCTCATCGTTGTTCTGACCGCCGCTGCTGATCTCGAAGGATATCTGAATG
ACCGTCGGTTGACGCTGGCTCGAACTGTAGCTGTAGATTCGCAGAGCGTA
GCAGAAGATCTGGGCCAAAAGATCCCAGCATCCAAACTCCGACATGGTCA
TCGATCCCTGTTGACTTCCCAGCGGCACGGAAATATTGGCACGGAATTGT
GGGCGCTGTTGCTGATGATGATGTCGCTGCTGCTGCTGCTGTTGTTGCGA
TTGTTGCTGCTGCTGCGATGGTGCAGCAGCTGTTGCAGTTGTCCTTGGAC
TCGCTGCTGTCTGCTGGCCGTTTTGCTGATAGCTTCTGGCCAACAATTGG
GCCTGGTCGGGTATGAAATAGGCGATGGCCATGTCGACTGATAACT
BO16550.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4345-PA | 417 | grim-RA | 1..411 | 432..22 | 2055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grim-RA | 1699 | CG4345-RA | 318..729 | 433..22 | 2060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18303689..18304100 | 22..433 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:48:44 has no hits.
BO16550.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:27 Download gff for
BO16550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4345-PA | 1..417 | 15..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:51 Download gff for
BO16550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 311..735 | 15..442 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:28 Download gff for
BO16550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 311..735 | 15..442 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:28 Download gff for
BO16550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18303682..18304107 | 15..442 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:51 Download gff for
BO16550.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18296782..18297207 | 15..442 | 98 | | Plus |
BO16550.complete Sequence
448 bp assembled on 2006-10-11
GenBank Submission: FJ633856
> BO16550.complete
GAAGTTATCAGTCGACATGGCCATCGCCTATTTCATACCCGACCAGGCCC
AATTGTTGGCCAGAAGCTATCAGCAAAACGGCCAGCAGACAGCAGCGAGT
CCAAGGACAACTGCAACAGCTGCTGCACCATCGCAGCAGCAGCAACAATC
GCAACAACAGCAGCAGCAGCAGCGACATCATCATCAGCAACAGCGCCCAC
AATTCCGTGCCAATATTTCCGTGCCGCTGGGAAGTCAACAGGGATCGATG
ACCATGTCGGAGTTTGGATGCTGGGATCTTTTGGCCCAGATCTTCTGCTA
CGCTCTGCGAATCTACAGCTACAGTTCGAGCCAGCGTCAACCGACGGTCA
TTCAGATATCCTTCGAGATCAGCAGCGGCGGTCAGAACAACGATGAGGAC
GACGTGACTGATGCCACCTCCAAGGAGAACGCAAGCTTTCTAGACCAT
BO16550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grim-RA | 417 | CG4345-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grim-RA | 1699 | CG4345-RA | 318..732 | 16..430 | 2075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18303686..18304100 | 430..16 | 2075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:01 has no hits.
BO16550.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:34 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 1..417 | 17..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:38 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 308..736 | 7..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:16 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 319..732 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:34 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 308..736 | 7..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:42 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grim-RA | 319..732 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:42 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18303684..18304099 | 17..432 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:16 Download gff for
BO16550.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18296784..18297199 | 17..432 | 99 | | Minus |
BO16550.pep Sequence
Translation from 16 to 448
> BO16550.pep
MAIAYFIPDQAQLLARSYQQNGQQTAASPRTTATAAAPSQQQQQSQQQQQ
QQRHHHQQQRPQFRANISVPLGSQQGSMTMSEFGCWDLLAQIFCYALRIY
SYSSSQRQPTVIQISFEISSGGQNNDEDDVTDATSKENASFLDH
BO16550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grim-PA | 138 | CG4345-PA | 1..138 | 1..138 | 710 | 100 | Plus |