Clone BO16550 Report

Search the DGRC for BO16550

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptgrim-RA
Protein status:BO16550.pep: validated full length
Sequenced Size:448

Clone Sequence Records

BO16550.5prime Sequence

446 bp (446 high quality bases) assembled on 2006-10-13

> BO16550.5prime
GAAGTTATCAGTCGACATGGCCATCGCCTATTTCATACCCGACCAGGCCC
AATTGTTGGCCAGAAGCTATCAGCAAAACGGCCAGCAGACAGCAGCGAGT
CCAAGGACAACTGCAACAGCTGCTGCACCATCGCAGCAGCAGCAACAATC
GCAACAACAGCAGCAGCAGCAGCGACATCATCATCAGCAACAGCGCCCAC
AATTCCGTGCCAATATTTCCGTGCCGCTGGGAAGTCAACAGGGATCGATG
ACCATGTCGGAGTTTGGATGCTGGGATCTTTTGGCCCAGATCTTCTGCTA
CGCTCTGCGAATCTACAGCTACAGTTCGAGCCAGCGTCAACCGACGGTCA
TTCAGATATCCTTCGAGATCAGCAGCGGCGGTCAGAACAACGATGAGGAC
GACGTGACTGATGCCACCTCCAAGGAGAACGCAAGCTTTCTAGACC

BO16550.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4345-PA 417 grim-RA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
grim-RA 1699 CG4345-RA 318..732 16..430 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18303686..18304100 430..16 2075 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:02:36 has no hits.

BO16550.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:28 Download gff for BO16550.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4345-PA 1..417 17..434 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:17 Download gff for BO16550.5prime
Subject Subject Range Query Range Percent Splice Strand
grim-RA 311..739 7..439 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:15:06 Download gff for BO16550.5prime
Subject Subject Range Query Range Percent Splice Strand
grim-RA 311..739 7..439 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:15:06 Download gff for BO16550.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18303679..18304107 7..439 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:17 Download gff for BO16550.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18296779..18297207 7..439 98   Minus

BO16550.3prime Sequence

446 bp (446 high quality bases) assembled on 2006-10-13

> BO16550.3prime
ATGGTCTAGAAAGCTTGCGCCCTCCTTGGAGGTGGCATCAGTCACGTCGT
CCTCATCGTTGTTCTGACCGCCGCTGCTGATCTCGAAGGATATCTGAATG
ACCGTCGGTTGACGCTGGCTCGAACTGTAGCTGTAGATTCGCAGAGCGTA
GCAGAAGATCTGGGCCAAAAGATCCCAGCATCCAAACTCCGACATGGTCA
TCGATCCCTGTTGACTTCCCAGCGGCACGGAAATATTGGCACGGAATTGT
GGGCGCTGTTGCTGATGATGATGTCGCTGCTGCTGCTGCTGTTGTTGCGA
TTGTTGCTGCTGCTGCGATGGTGCAGCAGCTGTTGCAGTTGTCCTTGGAC
TCGCTGCTGTCTGCTGGCCGTTTTGCTGATAGCTTCTGGCCAACAATTGG
GCCTGGTCGGGTATGAAATAGGCGATGGCCATGTCGACTGATAACT

BO16550.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4345-PA 417 grim-RA 1..411 432..22 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
grim-RA 1699 CG4345-RA 318..729 433..22 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18303689..18304100 22..433 2060 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:48:44 has no hits.

BO16550.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:27 Download gff for BO16550.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4345-PA 1..417 15..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:51 Download gff for BO16550.3prime
Subject Subject Range Query Range Percent Splice Strand
grim-RA 311..735 15..442 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:28 Download gff for BO16550.3prime
Subject Subject Range Query Range Percent Splice Strand
grim-RA 311..735 15..442 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:28 Download gff for BO16550.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18303682..18304107 15..442 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:51 Download gff for BO16550.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18296782..18297207 15..442 98   Plus

BO16550.complete Sequence

448 bp assembled on 2006-10-11

GenBank Submission: FJ633856

> BO16550.complete
GAAGTTATCAGTCGACATGGCCATCGCCTATTTCATACCCGACCAGGCCC
AATTGTTGGCCAGAAGCTATCAGCAAAACGGCCAGCAGACAGCAGCGAGT
CCAAGGACAACTGCAACAGCTGCTGCACCATCGCAGCAGCAGCAACAATC
GCAACAACAGCAGCAGCAGCAGCGACATCATCATCAGCAACAGCGCCCAC
AATTCCGTGCCAATATTTCCGTGCCGCTGGGAAGTCAACAGGGATCGATG
ACCATGTCGGAGTTTGGATGCTGGGATCTTTTGGCCCAGATCTTCTGCTA
CGCTCTGCGAATCTACAGCTACAGTTCGAGCCAGCGTCAACCGACGGTCA
TTCAGATATCCTTCGAGATCAGCAGCGGCGGTCAGAACAACGATGAGGAC
GACGTGACTGATGCCACCTCCAAGGAGAACGCAAGCTTTCTAGACCAT

BO16550.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
grim-RA 417 CG4345-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
grim-RA 1699 CG4345-RA 318..732 16..430 2075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18303686..18304100 430..16 2075 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:00:01 has no hits.

BO16550.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:34 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
grim-RA 1..417 17..434 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:38 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
grim-RA 308..736 7..439 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:16 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
grim-RA 319..732 17..432 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:34 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
grim-RA 308..736 7..439 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:42 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
grim-RA 319..732 17..432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:42 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18303684..18304099 17..432 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:16 Download gff for BO16550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18296784..18297199 17..432 99   Minus

BO16550.pep Sequence

Translation from 16 to 448

> BO16550.pep
MAIAYFIPDQAQLLARSYQQNGQQTAASPRTTATAAAPSQQQQQSQQQQQ
QQRHHHQQQRPQFRANISVPLGSQQGSMTMSEFGCWDLLAQIFCYALRIY
SYSSSQRQPTVIQISFEISSGGQNNDEDDVTDATSKENASFLDH

BO16550.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
grim-PA 138 CG4345-PA 1..138 1..138 710 100 Plus