Clone Sequence Records
BO16551.3prime Sequence
715 bp (647 high quality bases) assembled on 2006-10-13
> BO16551.3prime
ATGGTCTAGAAAGCTTGCCTTGAGGAACGCTTGGAGGCGATTCTGCTGCG
TTTTGCTGGCGTCTTTAAACGCGTTCGACTTCAGCTGGGCAGCTATTTGC
AGCAGTACGTTCTGCTTCTGGGTTTTGGACTGCGTTTTTGGTGCGGTGGG
CGCTGGCTGGGCAGGCTTCTTCTTTTTCTTCTTCGATGTCTGACTTGGGT
TTTGGGAAGCTATGCCGACTGGTTGGGACGCGTTTTTGGATGGAGCTGGC
GATTTCGAAGGCTGCTGCTGTCGCTGAGGCGCTTTTTGCTGCATTTTCAG
GCCTGCATTGATATCTTTATTCGGCGCCTGAGACTTCTTCGTTTTGGCCT
TCTTTTTGTTTTGGCCCGCTGGCGCAGGTTGTGTGACTACCATTGTCTCC
TCCGTGGCTTTTACTTTGGCGCGCTTTCGGCTCTTCTCCAGAGCCAACAT
TGTCTTGTGATGGCAAACATCGCAGTCCACGGCCATGTTACTGGCCATAC
GCTTCTTGAGCCACTTGGCCCGTTTCCTGGCCCCGCTGTTCATCTCGCCC
TTTGCCATCTTGCCCTTCACGGCTTCCAGCTTGGTGATCAGTCTCCGGTT
CTTAGCACTCTGCATCAGTTCTTGTGGCTGGAGGTGGAGCTGGTAGCGGC
CACCTGTCCACTGGTTCCCGCAGCGGGAGCACATGCGTGCGGGTCCAAAG
CTCTCTTCGGGCAAC
BO16551.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-PA | 831 | CG1360-RA | 132..828 | 715..19 | 3460 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 1757 | CG1360-RA | 327..1023 | 715..19 | 3470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7588507..7588972 | 19..484 | 2330 | 100 | Plus |
2R | 25286936 | 2R | 7589266..7589498 | 483..715 | 1150 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:06:29 has no hits.
BO16551.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:28 Download gff for
BO16551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-PA | 132..831 | 18..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:56 Download gff for
BO16551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 327..1027 | 13..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:02 Download gff for
BO16551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 327..1027 | 13..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:02 Download gff for
BO16551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7588503..7588971 | 13..483 | 99 | <- | Plus |
2R | 7589267..7589498 | 484..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:56 Download gff for
BO16551.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3476008..3476476 | 13..483 | 99 | <- | Plus |
arm_2R | 3476772..3477003 | 484..715 | 99 | | Plus |
BO16551.5prime Sequence
690 bp (657 high quality bases) assembled on 2006-10-13
> BO16551.5prime
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAA
BO16551.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-PA | 831 | CG1360-RA | 1..674 | 17..690 | 3370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 1757 | CG1360-RA | 195..869 | 16..690 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7588661..7588972 | 690..379 | 1560 | 100 | Minus |
2R | 25286936 | 2R | 7589266..7589534 | 380..112 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 7589595..7589690 | 111..16 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:39:43 has no hits.
BO16551.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:29 Download gff for
BO16551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-PA | 1..669 | 17..685 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:51 Download gff for
BO16551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 183..864 | 4..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:07 Download gff for
BO16551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 183..864 | 4..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:07 Download gff for
BO16551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7589267..7589534 | 112..379 | 100 | <- | Minus |
2R | 7589595..7589702 | 4..111 | 95 | | Minus |
2R | 7588666..7588971 | 380..685 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:51 Download gff for
BO16551.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3476171..3476476 | 380..685 | 100 | <- | Minus |
arm_2R | 3476772..3477039 | 112..379 | 100 | <- | Minus |
arm_2R | 3477100..3477207 | 4..111 | 95 | | Minus |
BO16551.complete Sequence
862 bp assembled on 2006-10-11
GenBank Submission: FJ633857
> BO16551.complete
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAAGAAGAAGCCT
GCCCAGCCAGCGCCCACCGCACCAAAAACGCAGTCCAAAACCCAGAAGCA
GAACGTACTGCTGCAAATAGCTGCCCAGCTGAAGTCGAACGCGTTTAAAG
ACGCCAGCAAAACGCAGCAGAATCGCCTCCAAGCGTTCCTCAAGGCAAGC
TTTCTAGACCAT
BO16551.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 831 | CG1360-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-RA | 1757 | CG1360-RA | 195..1023 | 16..844 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7588507..7588972 | 844..379 | 2330 | 100 | Minus |
2R | 25286936 | 2R | 7589266..7589534 | 380..112 | 1345 | 100 | Minus |
2R | 25286936 | 2R | 7589595..7589690 | 111..16 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:10:35 has no hits.
BO16551.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:36 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 1..831 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:41 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 180..1024 | 4..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:20 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 196..1023 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:37 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 180..1024 | 4..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:22 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1360-RA | 196..1023 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:22 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7588503..7588971 | 380..846 | 99 | <- | Minus |
2R | 7589267..7589534 | 112..379 | 100 | <- | Minus |
2R | 7589595..7589689 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:20 Download gff for
BO16551.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3476008..3476476 | 380..846 | 99 | <- | Minus |
arm_2R | 3476772..3477039 | 112..379 | 100 | <- | Minus |
arm_2R | 3477100..3477194 | 17..111 | 100 | | Minus |
BO16551.pep Sequence
Translation from 16 to 862
> BO16551.pep
MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF
GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG
EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE
TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP
APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ
IAAQLKSNAFKDASKTQQNRLQAFLKASFLDH
BO16551.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1360-PA | 276 | CG1360-PA | 1..276 | 1..276 | 1423 | 100 | Plus |