Clone BO16551 Report

Search the DGRC for BO16551

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG1360-RA
Protein status:BO16551.pep: validated full length
Sequenced Size:862

Clone Sequence Records

BO16551.3prime Sequence

715 bp (647 high quality bases) assembled on 2006-10-13

> BO16551.3prime
ATGGTCTAGAAAGCTTGCCTTGAGGAACGCTTGGAGGCGATTCTGCTGCG
TTTTGCTGGCGTCTTTAAACGCGTTCGACTTCAGCTGGGCAGCTATTTGC
AGCAGTACGTTCTGCTTCTGGGTTTTGGACTGCGTTTTTGGTGCGGTGGG
CGCTGGCTGGGCAGGCTTCTTCTTTTTCTTCTTCGATGTCTGACTTGGGT
TTTGGGAAGCTATGCCGACTGGTTGGGACGCGTTTTTGGATGGAGCTGGC
GATTTCGAAGGCTGCTGCTGTCGCTGAGGCGCTTTTTGCTGCATTTTCAG
GCCTGCATTGATATCTTTATTCGGCGCCTGAGACTTCTTCGTTTTGGCCT
TCTTTTTGTTTTGGCCCGCTGGCGCAGGTTGTGTGACTACCATTGTCTCC
TCCGTGGCTTTTACTTTGGCGCGCTTTCGGCTCTTCTCCAGAGCCAACAT
TGTCTTGTGATGGCAAACATCGCAGTCCACGGCCATGTTACTGGCCATAC
GCTTCTTGAGCCACTTGGCCCGTTTCCTGGCCCCGCTGTTCATCTCGCCC
TTTGCCATCTTGCCCTTCACGGCTTCCAGCTTGGTGATCAGTCTCCGGTT
CTTAGCACTCTGCATCAGTTCTTGTGGCTGGAGGTGGAGCTGGTAGCGGC
CACCTGTCCACTGGTTCCCGCAGCGGGAGCACATGCGTGCGGGTCCAAAG
CTCTCTTCGGGCAAC

BO16551.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 831 CG1360-RA 132..828 715..19 3460 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1757 CG1360-RA 327..1023 715..19 3470 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7588507..7588972 19..484 2330 100 Plus
2R 25286936 2R 7589266..7589498 483..715 1150 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 09:06:29 has no hits.

BO16551.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:28 Download gff for BO16551.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-PA 132..831 18..715 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:56 Download gff for BO16551.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 327..1027 13..715 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:02 Download gff for BO16551.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 327..1027 13..715 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:02 Download gff for BO16551.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7588503..7588971 13..483 99 <- Plus
2R 7589267..7589498 484..715 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:56 Download gff for BO16551.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3476008..3476476 13..483 99 <- Plus
arm_2R 3476772..3477003 484..715 99   Plus

BO16551.5prime Sequence

690 bp (657 high quality bases) assembled on 2006-10-13

> BO16551.5prime
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAA

BO16551.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 831 CG1360-RA 1..674 17..690 3370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1757 CG1360-RA 195..869 16..690 3375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7588661..7588972 690..379 1560 100 Minus
2R 25286936 2R 7589266..7589534 380..112 1345 100 Minus
2R 25286936 2R 7589595..7589690 111..16 480 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:39:43 has no hits.

BO16551.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:29 Download gff for BO16551.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-PA 1..669 17..685 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:51 Download gff for BO16551.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 183..864 4..685 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:07 Download gff for BO16551.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 183..864 4..685 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:07 Download gff for BO16551.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7589267..7589534 112..379 100 <- Minus
2R 7589595..7589702 4..111 95   Minus
2R 7588666..7588971 380..685 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:51 Download gff for BO16551.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3476171..3476476 380..685 100 <- Minus
arm_2R 3476772..3477039 112..379 100 <- Minus
arm_2R 3477100..3477207 4..111 95   Minus

BO16551.complete Sequence

862 bp assembled on 2006-10-11

GenBank Submission: FJ633857

> BO16551.complete
GAAGTTATCAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGA
ACTGTGCCTCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAA
TCCTATTACATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTT
GCCCGAGGAGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACC
AGTGGACAGGTGGCCGCTACCAGCTCCACCTCCAGCCACAAGAACTGATG
CAGAGTGCTAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGG
CAAGATGGCAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGT
GGCTCAAGAAGCGTATGGCCAGTAACATGGCCGTGGACTGCGATGTTTGC
CATCACAAGACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGT
AAAAGCCACGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCC
AAAACAAAAAGAAGGCCAAAACGAAGAAGTCTCAGGCGCCGAATAAAGAT
ATCAATGCAGGCCTGAAAATGCAGCAAAAAGCGCCTCAGCGACAGCAGCA
GCCTTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCAACCAGTCGGCA
TAGCTTCCCAAAACCCAAGTCAGACATCGAAGAAGAAAAAGAAGAAGCCT
GCCCAGCCAGCGCCCACCGCACCAAAAACGCAGTCCAAAACCCAGAAGCA
GAACGTACTGCTGCAAATAGCTGCCCAGCTGAAGTCGAACGCGTTTAAAG
ACGCCAGCAAAACGCAGCAGAATCGCCTCCAAGCGTTCCTCAAGGCAAGC
TTTCTAGACCAT

BO16551.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 831 CG1360-PA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-RA 1757 CG1360-RA 195..1023 16..844 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7588507..7588972 844..379 2330 100 Minus
2R 25286936 2R 7589266..7589534 380..112 1345 100 Minus
2R 25286936 2R 7589595..7589690 111..16 480 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:10:35 has no hits.

BO16551.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:36 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 1..831 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:41 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 180..1024 4..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:20 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 196..1023 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:37 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 180..1024 4..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:22 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
CG1360-RA 196..1023 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:22 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7588503..7588971 380..846 99 <- Minus
2R 7589267..7589534 112..379 100 <- Minus
2R 7589595..7589689 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:20 Download gff for BO16551.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3476008..3476476 380..846 99 <- Minus
arm_2R 3476772..3477039 112..379 100 <- Minus
arm_2R 3477100..3477194 17..111 100   Minus

BO16551.pep Sequence

Translation from 16 to 862

> BO16551.pep
MSDQKTVNLLWNCASKLTDQTHTERILKSYYITTCRKLARHNVQLPEESF
GPARMCSRCGNQWTGGRYQLHLQPQELMQSAKNRRLITKLEAVKGKMAKG
EMNSGARKRAKWLKKRMASNMAVDCDVCHHKTMLALEKSRKRAKVKATEE
TMVVTQPAPAGQNKKKAKTKKSQAPNKDINAGLKMQQKAPQRQQQPSKSP
APSKNASQPVGIASQNPSQTSKKKKKKPAQPAPTAPKTQSKTQKQNVLLQ
IAAQLKSNAFKDASKTQQNRLQAFLKASFLDH

BO16551.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1360-PA 276 CG1360-PA 1..276 1..276 1423 100 Plus