Clone Sequence Records
BO16554.3prime Sequence
737 bp (660 high quality bases) assembled on 2006-10-13
> BO16554.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTGCCACCTGGCTGTCCAGAACGGGTG
TGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATGG
TTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACAC
AGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATGC
GGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTTC
TGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGCC
GAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATGT
CCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGCA
CGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGGG
CACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGGG
AGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAACG
CCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAAT
GGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGCT
TGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAAG
TCACGCGGCGGCACTGGTATCTTGTTCACAATGTACT
BO16554.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PB | 1428 | Su(var)3-9-RB | 707..1425 | 737..19 | 3595 | 100 | Minus |
CG6476-PC | 1404 | Su(var)3-9-RC | 683..1401 | 737..19 | 3595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RD | 2062 | CG43665-RD | 818..1536 | 737..19 | 3595 | 100 | Minus |
eIF-2gamma-RC | 1886 | CG43665-RC | 782..1500 | 737..19 | 3595 | 100 | Minus |
eIF-2gamma-RB | 1922 | CG43665-RB | 818..1536 | 737..19 | 3595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259155 | 92..737 | 3230 | 100 | Plus |
3R | 32079331 | 3R | 15258370..15258443 | 19..92 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:43:08 has no hits.
BO16554.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:31 Download gff for
BO16554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PC | 683..1404 | 18..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:13:18 Download gff for
BO16554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 818..1536 | 19..737 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:10 Download gff for
BO16554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RB | 818..1536 | 19..737 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:10 Download gff for
BO16554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258370..15258442 | 19..91 | 100 | <- | Plus |
3R | 15258510..15259155 | 92..737 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:13:18 Download gff for
BO16554.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084092..11084164 | 19..91 | 100 | <- | Plus |
arm_3R | 11084232..11084877 | 92..737 | 100 | | Plus |
BO16554.5prime Sequence
795 bp (636 high quality bases) assembled on 2006-10-13
> BO16554.5prime
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAAGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCCATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTTGACAAGCCAGGCTG
BO16554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6476-PC | 1404 | Su(var)3-9-RC | 1..779 | 17..795 | 3795 | 99.4 | Plus |
CG6476-PB | 1428 | Su(var)3-9-RB | 66..803 | 58..795 | 3590 | 99.4 | Plus |
CG6476-PA | 1908 | Su(var)3-9-RA | 66..241 | 58..233 | 880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RC | 1886 | CG43665-RC | 98..878 | 15..795 | 3845 | 99.5 | Plus |
eIF-2gamma-RD | 2062 | CG43665-RD | 177..914 | 58..795 | 3630 | 99.5 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 177..914 | 58..795 | 3630 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15259059..15259388 | 795..466 | 1575 | 98.5 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 471..233 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 235..58 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15262796..15262840 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:58:59 has no hits.
BO16554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:32 Download gff for
BO16554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6476-PC | 1..779 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:29:19 Download gff for
BO16554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 91..878 | 6..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:46:24 Download gff for
BO16554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 91..878 | 6..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:46:24 Download gff for
BO16554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15259059..15259383 | 471..795 | 98 | <- | Minus |
3R | 15259450..15259686 | 234..470 | 100 | <- | Minus |
3R | 15262547..15262721 | 59..233 | 100 | <- | Minus |
3R | 15262797..15262845 | 6..58 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:29:19 Download gff for
BO16554.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084781..11085105 | 471..795 | 98 | <- | Minus |
arm_3R | 11085172..11085408 | 234..470 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 59..233 | 100 | <- | Minus |
arm_3R | 11088519..11088567 | 6..58 | 92 | | Minus |
BO16554.complete Sequence
1435 bp assembled on 2007-03-23
GenBank Submission: FJ633858
> BO16554.complete
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGG
TGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTG
CTGAAGGTAGGCCAAGAGATCGAGGTGCGTCCGGGCGTTGTGACCAAGGA
TAGCGATGGCAACATCACCTGCCGTCCAATCTTCTCCCGTATCGTCTCGC
TCTTCGCCGAACAGAATGAGCTGCAGTACGCCGTGCCCGGCGGTCTGATT
GGTGTGGGCACCAAGATCGATCCTACGCTGTGCCGTGCCGATCGTTTGGT
CGGTCAGGTGCTAGGCGCCGTTGGCCAGCTGCCGGACATCTACCAGGAGC
TGGAAATCTCGTATTACCTGCTGCGTCGCCTTCTCGGCGTCCGTACCGAT
GGTGACAAGAAGGGAGCGCGCGTTGAGAAGCTGCAGAAGAACGAAATCCT
GTTGGTTAATATCGGATCCCTCAGCACTGGTGGCCGCATCTCGGCCACCA
AAGGTGATTTGGCCAAGATCGTTCTTACGACGCCTGTGTGCACGGAGAAG
GGCGAGAAGATTGCACTCAGCAGACGTGTGGAGAACCATTGGCGTTTGAT
TGGCTGGGGTCAGATCTTCGGAGGCAAGACAATCACACCCGTTCTGGACA
GCCAGGTGGCAAAGAAGGCAAGCTTTCTAGACCAT
BO16554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RC | 1404 | CG43665-PC | 1..1401 | 17..1417 | 7005 | 100 | Plus |
eIF-2gamma-RD | 1428 | CG43665-PD | 66..1425 | 58..1417 | 6800 | 100 | Plus |
eIF-2gamma-RB | 1428 | CG43665-PB | 66..1425 | 58..1417 | 6800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-RC | 1886 | CG43665-RC | 98..1500 | 15..1417 | 7015 | 100 | Plus |
eIF-2gamma-RD | 2062 | CG43665-RD | 177..1536 | 58..1417 | 6800 | 100 | Plus |
eIF-2gamma-RB | 1922 | CG43665-RB | 177..1536 | 58..1417 | 6800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15258510..15259388 | 1344..466 | 4380 | 99.9 | Minus |
3R | 32079331 | 3R | 15259449..15259687 | 471..233 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 15262545..15262722 | 235..58 | 890 | 100 | Minus |
3R | 32079331 | 3R | 15258370..15258443 | 1417..1344 | 370 | 100 | Minus |
3R | 32079331 | 3R | 15262796..15262840 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:58:53 has no hits.
BO16554.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:01 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RC | 1..1404 | 17..1418 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:58 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RC | 91..1500 | 6..1417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:44 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 100..1500 | 17..1419 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:02 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)3-9-RC | 91..1500 | 6..1417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:35 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF-2gamma-RC | 100..1500 | 17..1419 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:35 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15258368..15258442 | 1345..1419 | 97 | <- | Minus |
3R | 15258510..15259383 | 471..1344 | 100 | <- | Minus |
3R | 15259450..15259686 | 234..470 | 100 | <- | Minus |
3R | 15262547..15262721 | 59..233 | 100 | <- | Minus |
3R | 15262797..15262838 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:44 Download gff for
BO16554.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11084090..11084164 | 1345..1419 | 97 | <- | Minus |
arm_3R | 11084232..11085105 | 471..1344 | 100 | <- | Minus |
arm_3R | 11085172..11085408 | 234..470 | 100 | <- | Minus |
arm_3R | 11088269..11088443 | 59..233 | 100 | <- | Minus |
arm_3R | 11088519..11088560 | 17..58 | 100 | | Minus |
BO16554.pep Sequence
Translation from 16 to 1435
> BO16554.pep
MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK
AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK
DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI
AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK
FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI
RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI
TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG
AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG
SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI
FGGKTITPVLDSQVAKKASFLDH
BO16554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF-2gamma-PC | 467 | CG43665-PC | 1..467 | 1..467 | 2380 | 100 | Plus |
eIF-2gamma-PD | 475 | CG43665-PD | 23..475 | 15..467 | 2310 | 100 | Plus |
eIF-2gamma-PB | 475 | CG43665-PB | 23..475 | 15..467 | 2310 | 100 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 23..89 | 15..81 | 284 | 89.6 | Plus |
EfSec-PA | 511 | CG9841-PA | 6..230 | 34..287 | 201 | 27.8 | Plus |