Clone BO16554 Report

Search the DGRC for BO16554

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)3-9-RC
Protein status:BO16554.pep: validated full length
Sequenced Size:1435

Clone Sequence Records

BO16554.3prime Sequence

737 bp (660 high quality bases) assembled on 2006-10-13

> BO16554.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTGCCACCTGGCTGTCCAGAACGGGTG
TGATTGTCTTGCCTCCGAAGATCTGACCCCAGCCAATCAAACGCCAATGG
TTCTCCACACGTCTGCTGAGTGCAATCTTCTCGCCCTTCTCCGTGCACAC
AGGCGTCGTAAGAACGATCTTGGCCAAATCACCTTTGGTGGCCGAGATGC
GGCCACCAGTGCTGAGGGATCCGATATTAACCAACAGGATTTCGTTCTTC
TGCAGCTTCTCAACGCGCGCTCCCTTCTTGTCACCATCGGTACGGACGCC
GAGAAGGCGACGCAGCAGGTAATACGAGATTTCCAGCTCCTGGTAGATGT
CCGGCAGCTGGCCAACGGCGCCTAGCACCTGACCGACCAAACGATCGGCA
CGGCACAGCGTAGGATCGATCTTGGTGCCCACACCAATCAGACCGCCGGG
CACGGCGTACTGCAGCTCATTCTGTTCGGCGAAGAGCGAGACGATACGGG
AGAAGATTGGACGGCAGGTGATGTTGCCATCGCTATCCTTGGTCACAACG
CCCGGACGCACCTCGATCTCTTGGCCTACCTTCAGCACGCCGCTCAGAAT
GGAGCCACCGGCCACACCGCCCTTAAGGTCTGCCACCTCACAGCCTGGCT
TGTTCACGTCGAAGGATCGGATGACGATCAGACGGGGCGGGGCATTGAAG
TCACGCGGCGGCACTGGTATCTTGTTCACAATGTACT

BO16554.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PB 1428 Su(var)3-9-RB 707..1425 737..19 3595 100 Minus
CG6476-PC 1404 Su(var)3-9-RC 683..1401 737..19 3595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RD 2062 CG43665-RD 818..1536 737..19 3595 100 Minus
eIF-2gamma-RC 1886 CG43665-RC 782..1500 737..19 3595 100 Minus
eIF-2gamma-RB 1922 CG43665-RB 818..1536 737..19 3595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259155 92..737 3230 100 Plus
3R 32079331 3R 15258370..15258443 19..92 370 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:43:08 has no hits.

BO16554.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:31 Download gff for BO16554.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PC 683..1404 18..737 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:13:18 Download gff for BO16554.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 818..1536 19..737 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:10 Download gff for BO16554.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RB 818..1536 19..737 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:10 Download gff for BO16554.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15258370..15258442 19..91 100 <- Plus
3R 15258510..15259155 92..737 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:13:18 Download gff for BO16554.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084092..11084164 19..91 100 <- Plus
arm_3R 11084232..11084877 92..737 100   Plus

BO16554.5prime Sequence

795 bp (636 high quality bases) assembled on 2006-10-13

> BO16554.5prime
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAAGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCCATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTTGACAAGCCAGGCTG

BO16554.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6476-PC 1404 Su(var)3-9-RC 1..779 17..795 3795 99.4 Plus
CG6476-PB 1428 Su(var)3-9-RB 66..803 58..795 3590 99.4 Plus
CG6476-PA 1908 Su(var)3-9-RA 66..241 58..233 880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RC 1886 CG43665-RC 98..878 15..795 3845 99.5 Plus
eIF-2gamma-RD 2062 CG43665-RD 177..914 58..795 3630 99.5 Plus
eIF-2gamma-RB 1922 CG43665-RB 177..914 58..795 3630 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15259059..15259388 795..466 1575 98.5 Minus
3R 32079331 3R 15259449..15259687 471..233 1195 100 Minus
3R 32079331 3R 15262545..15262722 235..58 890 100 Minus
3R 32079331 3R 15262796..15262840 59..15 225 100 Minus
Blast to na_te.dros performed on 2015-01-30 18:58:59 has no hits.

BO16554.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:32 Download gff for BO16554.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6476-PC 1..779 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:29:19 Download gff for BO16554.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 91..878 6..795 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:46:24 Download gff for BO16554.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 91..878 6..795 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:46:24 Download gff for BO16554.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15259059..15259383 471..795 98 <- Minus
3R 15259450..15259686 234..470 100 <- Minus
3R 15262547..15262721 59..233 100 <- Minus
3R 15262797..15262845 6..58 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:29:19 Download gff for BO16554.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084781..11085105 471..795 98 <- Minus
arm_3R 11085172..11085408 234..470 100 <- Minus
arm_3R 11088269..11088443 59..233 100 <- Minus
arm_3R 11088519..11088567 6..58 92   Minus

BO16554.complete Sequence

1435 bp assembled on 2007-03-23

GenBank Submission: FJ633858

> BO16554.complete
GAAGTTATCAGTCGACATGCATCTGAGAGGGGATGTTTTGTTAGGGGGTG
TGGCGGCGGACGTCTCTAAACTAACGCCTCTATCACCGGAGGTCATCTCC
CGACAGGCGACCATCAACATCGGCACCATCGGTCATGTGGCTCACGGCAA
ATCCACGGTGGTCAAAGCCATATCCGGCGTGCAGACTGTGCGCTTCAAGA
ACGAACTGGAGCGCAACATCACAATCAAGCTGGGTTATGCCAACGCCAAA
ATCTACAAGTGTGACAACCCCAAGTGCCCGCGCCCGGCCAGCTTCGTATC
GGATGCATCCAGCAAGGACGACAGCTTGCCCTGCACTCGGCTCAACTGCT
CCGGCAACTTCAGACTGGTGCGACATGTGAGCTTCGTGGATTGCCCCGGT
CACGACATTCTTATGGCTACCATGTTGAACGGTGCTGCTGTGATGGACGC
TGCTCTGCTGCTCATTGCTGGCAATGAATCCTGTCCACAACCGCAAACCT
CTGAGCATTTGGCCGCCATTGAGATTATGAAGCTGAAACAGATTCTGATC
TTGCAAAACAAGATCGATCTGATCAAGGAGAGCCAGGCGAAAGAGCAGTA
CGAGGAGATCACCAAATTCGTCCAGGGCACCGTAGCTGAGGGCGCTCCGA
TCATTCCGATCTCGGCCCAGCTTAAGTACAACATCGATGTGCTCTGCGAG
TACATTGTGAACAAGATACCAGTGCCGCCGCGTGACTTCAATGCCCCGCC
CCGTCTGATCGTCATCCGATCCTTCGACGTGAACAAGCCAGGCTGTGAGG
TGGCAGACCTTAAGGGCGGTGTGGCCGGTGGCTCCATTCTGAGCGGCGTG
CTGAAGGTAGGCCAAGAGATCGAGGTGCGTCCGGGCGTTGTGACCAAGGA
TAGCGATGGCAACATCACCTGCCGTCCAATCTTCTCCCGTATCGTCTCGC
TCTTCGCCGAACAGAATGAGCTGCAGTACGCCGTGCCCGGCGGTCTGATT
GGTGTGGGCACCAAGATCGATCCTACGCTGTGCCGTGCCGATCGTTTGGT
CGGTCAGGTGCTAGGCGCCGTTGGCCAGCTGCCGGACATCTACCAGGAGC
TGGAAATCTCGTATTACCTGCTGCGTCGCCTTCTCGGCGTCCGTACCGAT
GGTGACAAGAAGGGAGCGCGCGTTGAGAAGCTGCAGAAGAACGAAATCCT
GTTGGTTAATATCGGATCCCTCAGCACTGGTGGCCGCATCTCGGCCACCA
AAGGTGATTTGGCCAAGATCGTTCTTACGACGCCTGTGTGCACGGAGAAG
GGCGAGAAGATTGCACTCAGCAGACGTGTGGAGAACCATTGGCGTTTGAT
TGGCTGGGGTCAGATCTTCGGAGGCAAGACAATCACACCCGTTCTGGACA
GCCAGGTGGCAAAGAAGGCAAGCTTTCTAGACCAT

BO16554.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RC 1404 CG43665-PC 1..1401 17..1417 7005 100 Plus
eIF-2gamma-RD 1428 CG43665-PD 66..1425 58..1417 6800 100 Plus
eIF-2gamma-RB 1428 CG43665-PB 66..1425 58..1417 6800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-RC 1886 CG43665-RC 98..1500 15..1417 7015 100 Plus
eIF-2gamma-RD 2062 CG43665-RD 177..1536 58..1417 6800 100 Plus
eIF-2gamma-RB 1922 CG43665-RB 177..1536 58..1417 6800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15258510..15259388 1344..466 4380 99.9 Minus
3R 32079331 3R 15259449..15259687 471..233 1195 100 Minus
3R 32079331 3R 15262545..15262722 235..58 890 100 Minus
3R 32079331 3R 15258370..15258443 1417..1344 370 100 Minus
3R 32079331 3R 15262796..15262840 59..15 225 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:58:53 has no hits.

BO16554.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:01 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 1..1404 17..1418 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:58 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 91..1500 6..1417 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:44 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 100..1500 17..1419 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:02 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)3-9-RC 91..1500 6..1417 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:35 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
eIF-2gamma-RC 100..1500 17..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:35 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15258368..15258442 1345..1419 97 <- Minus
3R 15258510..15259383 471..1344 100 <- Minus
3R 15259450..15259686 234..470 100 <- Minus
3R 15262547..15262721 59..233 100 <- Minus
3R 15262797..15262838 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:44 Download gff for BO16554.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11084090..11084164 1345..1419 97 <- Minus
arm_3R 11084232..11085105 471..1344 100 <- Minus
arm_3R 11085172..11085408 234..470 100 <- Minus
arm_3R 11088269..11088443 59..233 100 <- Minus
arm_3R 11088519..11088560 17..58 100   Minus

BO16554.pep Sequence

Translation from 16 to 1435

> BO16554.pep
MHLRGDVLLGGVAADVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVK
AISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSK
DDSLPCTRLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLI
AGNESCPQPQTSEHLAAIEIMKLKQILILQNKIDLIKESQAKEQYEEITK
FVQGTVAEGAPIIPISAQLKYNIDVLCEYIVNKIPVPPRDFNAPPRLIVI
RSFDVNKPGCEVADLKGGVAGGSILSGVLKVGQEIEVRPGVVTKDSDGNI
TCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIDPTLCRADRLVGQVLG
AVGQLPDIYQELEISYYLLRRLLGVRTDGDKKGARVEKLQKNEILLVNIG
SLSTGGRISATKGDLAKIVLTTPVCTEKGEKIALSRRVENHWRLIGWGQI
FGGKTITPVLDSQVAKKASFLDH

BO16554.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
eIF-2gamma-PC 467 CG43665-PC 1..467 1..467 2380 100 Plus
eIF-2gamma-PD 475 CG43665-PD 23..475 15..467 2310 100 Plus
eIF-2gamma-PB 475 CG43665-PB 23..475 15..467 2310 100 Plus
Su(var)3-9-PA 635 CG43664-PA 23..89 15..81 284 89.6 Plus
EfSec-PA 511 CG9841-PA 6..230 34..287 201 27.8 Plus