Clone BO16555 Report

Search the DGRC for BO16555

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG10741-RB
Protein status:BO16555.pep: validated full length
Sequenced Size:1180

Clone Sequence Records

BO16555.3prime Sequence

643 bp (620 high quality bases) assembled on 2006-10-13

> BO16555.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGTGCCCGCCCTGCAGCTTCTTCCAAG
TTTCGCCCAGCGCCTTGGCAAAGTGGTCGTCCACCGAGGCTTCAGTCTTG
GTGAATATCGAGATATTCGTGGACGAGGTGGGCGAAGCGGGCGGCGTCTG
CGTCGAGGAGGCAGCCACGGCCGCCAGTCCCGGTTCAGCCTTCACCCGAA
TGATGGCCGGCATGCTGGGCGTGGGCGTGGGAATCTGCGACGGCGTCGGA
TTCGGAGTTGGTGTCGGTGTCAAAGTCGGCGCCACAACGGTGGTTCCGGC
TATTCCGTAAGCCGGCGGTGGAGGCGGTGGTGTGTTGTATCTCGGCGGCG
TGTGGTGTGGCGTGTCCAGGATCCGCCTGCCCGCCACCGCTGCCTCCATC
ACCTGGCTGACGGCCGTGGGTAGCGCTGGTGCCGATCCCGTGGCCGAAGG
TGGCGGCGATGGCGGCGTTTGGGTGCGATGCAGTGCCAGCGACAGGGGAA
GCGGTTCCTCCTGCGGCGGCGGCAGTTCCGGCTGCAGCGATTCGGGCTCC
AGAATGACCCATCCCGACTTGGCCAGCGGCGAGCGTTGCTGCTGGTAGTG
CTGCGATGCCGCTGTGCTGGTTGATGAAGGCAGTCCGTAGGCC

BO16555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10741-PB 1149 CG10741-RB 522..1146 643..19 3125 100 Minus
CG10741-PA 1608 CG10741-RA 981..1605 643..19 3125 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RA 2045 CG10741-RA 981..1605 643..19 3125 100 Minus
Tgi-RB 1904 CG10741-RB 840..1464 643..19 3125 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501428..13502052 643..19 3125 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:39:57 has no hits.

BO16555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:32 Download gff for BO16555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-PA 981..1608 18..643 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:47 Download gff for BO16555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 840..1464 19..643 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:59 Download gff for BO16555.3prime
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 840..1464 19..643 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:59 Download gff for BO16555.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13501428..13502057 14..643 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:47 Download gff for BO16555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13494528..13495157 14..643 99 -> Minus

BO16555.5prime Sequence

714 bp (607 high quality bases) assembled on 2006-10-13

> BO16555.5prime
GAAGTTATCAGTCGACATGGAAACGGCGCTGGATGTACTCTCTAGAGCGG
CGACCATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTG
CTGACCACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATA
CCAGCCGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGG
ATCGAGAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACG
GGAGCTCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTT
GCCTGGGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGG
CTCCACCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCG
ATGTGCGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGC
TGCCCTGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCT
CGCCAAGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTG
CCTTCATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTC
GCCGCTGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGC
CGGAACTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTG
CATCGCACCCAAAC

BO16555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10741-PB 1149 CG10741-RB 1..698 17..714 3490 100 Plus
CG10741-PA 1608 CG10741-RA 520..1157 77..714 3190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RB 1904 CG10741-RB 318..1016 16..714 3495 100 Plus
Tgi-RA 2045 CG10741-RA 520..1157 77..714 3190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501280..13501604 390..714 1625 100 Plus
3L 28110227 3L 13500899..13501214 77..392 1580 100 Plus
3L 28110227 3L 13487669..13487730 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:40:10 has no hits.

BO16555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:33 Download gff for BO16555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-PB 1..698 17..714 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:50 Download gff for BO16555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 313..1016 7..714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:01 Download gff for BO16555.5prime
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 313..1016 7..714 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:01 Download gff for BO16555.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13487664..13487730 7..77 94 -> Plus
3L 13500900..13501214 78..392 100 -> Plus
3L 13501283..13501604 393..714 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:50 Download gff for BO16555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13480764..13480830 7..77 94 -> Plus
arm_3L 13494000..13494314 78..392 100 -> Plus
arm_3L 13494383..13494704 393..714 100   Plus

BO16555.complete Sequence

1180 bp assembled on 2006-10-11

GenBank Submission: FJ633859

> BO16555.complete
GAAGTTATCAGTCGACATGGAAACGGCGCTGGATGTACTCTCTAGAGCGG
CGACCATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTG
CTGACCACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATA
CCAGCCGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGG
ATCGAGAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACG
GGAGCTCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTT
GCCTGGGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGG
CTCCACCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCG
ATGTGCGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGC
TGCCCTGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCT
CGCCAAGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTG
CCTTCATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTC
GCCGCTGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGC
CGGAACTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTG
CATCGCACCCAAACGCCGCCATCGCCGCCACCTTCGGCCACGGGATCGGC
ACCAGCGCTACCCACGGCCGTCAGCCAGGTGATGGAGGCAGCGGTGGCGG
GCAGGCGGATCCTGGACACGCCACACCACACGCCGCCGAGATACAACACA
CCACCGCCTCCACCGCCGGCTTACGGAATAGCCGGAACCACCGTTGTGGC
GCCGACTTTGACACCGACACCAACTCCGAATCCGACGCCGTCGCAGATTC
CCACGCCCACGCCCAGCATGCCGGCCATCATTCGGGTGAAGGCTGAACCG
GGACTGGCGGCCGTGGCTGCCTCCTCGACGCAGACGCCGCCCGCTTCGCC
CACCTCGTCCACGAATATCTCGATATTCACCAAGACTGAAGCCTCGGTGG
ACGACCACTTTGCCAAGGCGCTGGGCGAAACTTGGAAGAAGCTGCAGGGC
GGGCACAAGGAGGCAAGCTTTCTAGACCAT

BO16555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RB 1149 CG10741-PB 1..1146 17..1162 5730 100 Plus
Tgi-RA 1608 CG10741-PA 520..1605 77..1162 5430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-RB 1904 CG10741-RB 318..1464 16..1162 5735 100 Plus
Tgi-RA 2045 CG10741-RA 520..1605 77..1162 5430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13501280..13502052 390..1162 3865 100 Plus
3L 28110227 3L 13500899..13501214 77..392 1580 100 Plus
3L 28110227 3L 13487669..13487730 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:23:59 has no hits.

BO16555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:38 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 1..1149 17..1163 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:07 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 312..1457 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:19 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 319..1464 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:38 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
CG10741-RB 306..1457 7..1162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:12 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
Tgi-RB 319..1464 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:12 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13487670..13487730 17..77 100 -> Plus
3L 13500900..13501214 78..392 100 -> Plus
3L 13501283..13502052 393..1164 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:19 Download gff for BO16555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13480770..13480830 17..77 100 -> Plus
arm_3L 13494000..13494314 78..392 100 -> Plus
arm_3L 13494383..13495152 393..1164 99   Plus

BO16555.pep Sequence

Translation from 16 to 1180

> BO16555.pep
METALDVLSRAATMVQNNPSEMRATSKVLTTTKWRRERRQRSAGYQPHEA
GNSERERERERDREDRDMDSPIDMSVTTGALKQRASPPPPYREPLPGTNY
AANSRPSVITQAPPKREPPEQAHSTDMAMCDIDEHFRRSLGENYAALFAK
KSPTPTPTPTPSPSGTPKQQVSPLAYGLPSSTSTAASQHYQQQRSPLAKS
GWVILEPESLQPELPPPQEEPLPLSLALHRTQTPPSPPPSATGSAPALPT
AVSQVMEAAVAGRRILDTPHHTPPRYNTPPPPPPAYGIAGTTVVAPTLTP
TPTPNPTPSQIPTPTPSMPAIIRVKAEPGLAAVAASSTQTPPASPTSSTN
ISIFTKTEASVDDHFAKALGETWKKLQGGHKEASFLDH

BO16555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tgi-PB 382 CG10741-PB 1..382 1..382 2011 100 Plus
Tgi-PA 535 CG10741-PA 173..535 20..382 1919 100 Plus
CG15021-PA 420 CG15021-PA 69..260 79..319 165 27.7 Plus
Jarid2-PD 2351 CG3654-PD 795..1114 53..357 161 26.4 Plus
CG15021-PA 420 CG15021-PA 57..206 155..319 159 32.4 Plus
CG15021-PA 420 CG15021-PA 151..386 87..349 153 26.1 Plus
CG15023-PC 168 CG15023-PC 56..151 207..316 148 35.1 Plus