Clone Sequence Records
BO16555.3prime Sequence
643 bp (620 high quality bases) assembled on 2006-10-13
> BO16555.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGTGCCCGCCCTGCAGCTTCTTCCAAG
TTTCGCCCAGCGCCTTGGCAAAGTGGTCGTCCACCGAGGCTTCAGTCTTG
GTGAATATCGAGATATTCGTGGACGAGGTGGGCGAAGCGGGCGGCGTCTG
CGTCGAGGAGGCAGCCACGGCCGCCAGTCCCGGTTCAGCCTTCACCCGAA
TGATGGCCGGCATGCTGGGCGTGGGCGTGGGAATCTGCGACGGCGTCGGA
TTCGGAGTTGGTGTCGGTGTCAAAGTCGGCGCCACAACGGTGGTTCCGGC
TATTCCGTAAGCCGGCGGTGGAGGCGGTGGTGTGTTGTATCTCGGCGGCG
TGTGGTGTGGCGTGTCCAGGATCCGCCTGCCCGCCACCGCTGCCTCCATC
ACCTGGCTGACGGCCGTGGGTAGCGCTGGTGCCGATCCCGTGGCCGAAGG
TGGCGGCGATGGCGGCGTTTGGGTGCGATGCAGTGCCAGCGACAGGGGAA
GCGGTTCCTCCTGCGGCGGCGGCAGTTCCGGCTGCAGCGATTCGGGCTCC
AGAATGACCCATCCCGACTTGGCCAGCGGCGAGCGTTGCTGCTGGTAGTG
CTGCGATGCCGCTGTGCTGGTTGATGAAGGCAGTCCGTAGGCC
BO16555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10741-PB | 1149 | CG10741-RB | 522..1146 | 643..19 | 3125 | 100 | Minus |
CG10741-PA | 1608 | CG10741-RA | 981..1605 | 643..19 | 3125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tgi-RA | 2045 | CG10741-RA | 981..1605 | 643..19 | 3125 | 100 | Minus |
Tgi-RB | 1904 | CG10741-RB | 840..1464 | 643..19 | 3125 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13501428..13502052 | 643..19 | 3125 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:39:57 has no hits.
BO16555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:32 Download gff for
BO16555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-PA | 981..1608 | 18..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:47 Download gff for
BO16555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-RB | 840..1464 | 19..643 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:59 Download gff for
BO16555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tgi-RB | 840..1464 | 19..643 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:59 Download gff for
BO16555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13501428..13502057 | 14..643 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:47 Download gff for
BO16555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13494528..13495157 | 14..643 | 99 | -> | Minus |
BO16555.5prime Sequence
714 bp (607 high quality bases) assembled on 2006-10-13
> BO16555.5prime
GAAGTTATCAGTCGACATGGAAACGGCGCTGGATGTACTCTCTAGAGCGG
CGACCATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTG
CTGACCACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATA
CCAGCCGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGG
ATCGAGAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACG
GGAGCTCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTT
GCCTGGGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGG
CTCCACCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCG
ATGTGCGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGC
TGCCCTGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCT
CGCCAAGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTG
CCTTCATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTC
GCCGCTGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGC
CGGAACTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTG
CATCGCACCCAAAC
BO16555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10741-PB | 1149 | CG10741-RB | 1..698 | 17..714 | 3490 | 100 | Plus |
CG10741-PA | 1608 | CG10741-RA | 520..1157 | 77..714 | 3190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tgi-RB | 1904 | CG10741-RB | 318..1016 | 16..714 | 3495 | 100 | Plus |
Tgi-RA | 2045 | CG10741-RA | 520..1157 | 77..714 | 3190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13501280..13501604 | 390..714 | 1625 | 100 | Plus |
3L | 28110227 | 3L | 13500899..13501214 | 77..392 | 1580 | 100 | Plus |
3L | 28110227 | 3L | 13487669..13487730 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:40:10 has no hits.
BO16555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:33 Download gff for
BO16555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-PB | 1..698 | 17..714 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:50 Download gff for
BO16555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-RB | 313..1016 | 7..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:01 Download gff for
BO16555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tgi-RB | 313..1016 | 7..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:01 Download gff for
BO16555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13487664..13487730 | 7..77 | 94 | -> | Plus |
3L | 13500900..13501214 | 78..392 | 100 | -> | Plus |
3L | 13501283..13501604 | 393..714 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:50 Download gff for
BO16555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13480764..13480830 | 7..77 | 94 | -> | Plus |
arm_3L | 13494000..13494314 | 78..392 | 100 | -> | Plus |
arm_3L | 13494383..13494704 | 393..714 | 100 | | Plus |
BO16555.complete Sequence
1180 bp assembled on 2006-10-11
GenBank Submission: FJ633859
> BO16555.complete
GAAGTTATCAGTCGACATGGAAACGGCGCTGGATGTACTCTCTAGAGCGG
CGACCATGGTGCAAAACAATCCCAGCGAGATGCGTGCGACGTCCAAGGTG
CTGACCACCACCAAATGGCGACGCGAGCGGCGTCAGCGTAGTGCCGGATA
CCAGCCGCACGAGGCAGGCAACAGCGAGAGGGAGCGGGAACGGGAGCGGG
ATCGAGAGGATCGCGACATGGACAGTCCCATTGACATGTCGGTGACGACG
GGAGCTCTGAAGCAGAGAGCCTCACCGCCGCCACCCTATCGCGAACCCTT
GCCTGGGACCAACTACGCGGCCAACAGTCGACCCAGCGTCATTACCCAGG
CTCCACCCAAGCGAGAACCACCGGAGCAGGCCCACTCTACAGATATGGCG
ATGTGCGACATTGACGAGCACTTCCGACGCTCACTGGGCGAGAACTATGC
TGCCCTGTTCGCCAAGAAGTCACCGACGCCTACGCCAACACCCACGCCCT
CGCCAAGTGGTACACCTAAGCAGCAGGTTTCGCCACTGGCCTACGGACTG
CCTTCATCAACCAGCACAGCGGCATCGCAGCACTACCAGCAGCAACGCTC
GCCGCTGGCCAAGTCGGGATGGGTCATTCTGGAGCCCGAATCGCTGCAGC
CGGAACTGCCGCCGCCGCAGGAGGAACCGCTTCCCCTGTCGCTGGCACTG
CATCGCACCCAAACGCCGCCATCGCCGCCACCTTCGGCCACGGGATCGGC
ACCAGCGCTACCCACGGCCGTCAGCCAGGTGATGGAGGCAGCGGTGGCGG
GCAGGCGGATCCTGGACACGCCACACCACACGCCGCCGAGATACAACACA
CCACCGCCTCCACCGCCGGCTTACGGAATAGCCGGAACCACCGTTGTGGC
GCCGACTTTGACACCGACACCAACTCCGAATCCGACGCCGTCGCAGATTC
CCACGCCCACGCCCAGCATGCCGGCCATCATTCGGGTGAAGGCTGAACCG
GGACTGGCGGCCGTGGCTGCCTCCTCGACGCAGACGCCGCCCGCTTCGCC
CACCTCGTCCACGAATATCTCGATATTCACCAAGACTGAAGCCTCGGTGG
ACGACCACTTTGCCAAGGCGCTGGGCGAAACTTGGAAGAAGCTGCAGGGC
GGGCACAAGGAGGCAAGCTTTCTAGACCAT
BO16555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tgi-RB | 1149 | CG10741-PB | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Tgi-RA | 1608 | CG10741-PA | 520..1605 | 77..1162 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tgi-RB | 1904 | CG10741-RB | 318..1464 | 16..1162 | 5735 | 100 | Plus |
Tgi-RA | 2045 | CG10741-RA | 520..1605 | 77..1162 | 5430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13501280..13502052 | 390..1162 | 3865 | 100 | Plus |
3L | 28110227 | 3L | 13500899..13501214 | 77..392 | 1580 | 100 | Plus |
3L | 28110227 | 3L | 13487669..13487730 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:23:59 has no hits.
BO16555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:38 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-RB | 1..1149 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:07 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-RB | 312..1457 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:19 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-RB | 319..1464 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:38 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10741-RB | 306..1457 | 7..1162 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:12 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tgi-RB | 319..1464 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:12 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13487670..13487730 | 17..77 | 100 | -> | Plus |
3L | 13500900..13501214 | 78..392 | 100 | -> | Plus |
3L | 13501283..13502052 | 393..1164 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:19 Download gff for
BO16555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13480770..13480830 | 17..77 | 100 | -> | Plus |
arm_3L | 13494000..13494314 | 78..392 | 100 | -> | Plus |
arm_3L | 13494383..13495152 | 393..1164 | 99 | | Plus |
BO16555.pep Sequence
Translation from 16 to 1180
> BO16555.pep
METALDVLSRAATMVQNNPSEMRATSKVLTTTKWRRERRQRSAGYQPHEA
GNSERERERERDREDRDMDSPIDMSVTTGALKQRASPPPPYREPLPGTNY
AANSRPSVITQAPPKREPPEQAHSTDMAMCDIDEHFRRSLGENYAALFAK
KSPTPTPTPTPSPSGTPKQQVSPLAYGLPSSTSTAASQHYQQQRSPLAKS
GWVILEPESLQPELPPPQEEPLPLSLALHRTQTPPSPPPSATGSAPALPT
AVSQVMEAAVAGRRILDTPHHTPPRYNTPPPPPPAYGIAGTTVVAPTLTP
TPTPNPTPSQIPTPTPSMPAIIRVKAEPGLAAVAASSTQTPPASPTSSTN
ISIFTKTEASVDDHFAKALGETWKKLQGGHKEASFLDH
BO16555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tgi-PB | 382 | CG10741-PB | 1..382 | 1..382 | 2011 | 100 | Plus |
Tgi-PA | 535 | CG10741-PA | 173..535 | 20..382 | 1919 | 100 | Plus |
CG15021-PA | 420 | CG15021-PA | 69..260 | 79..319 | 165 | 27.7 | Plus |
Jarid2-PD | 2351 | CG3654-PD | 795..1114 | 53..357 | 161 | 26.4 | Plus |
CG15021-PA | 420 | CG15021-PA | 57..206 | 155..319 | 159 | 32.4 | Plus |
CG15021-PA | 420 | CG15021-PA | 151..386 | 87..349 | 153 | 26.1 | Plus |
CG15023-PC | 168 | CG15023-PC | 56..151 | 207..316 | 148 | 35.1 | Plus |