Clone Sequence Records
BO16556.5prime Sequence
563 bp (563 high quality bases) assembled on 2006-10-13
> BO16556.5prime
GAAGTTATCAGTCGACATGGCTGGCATCAAGAGCCCCGACAGAATCACTC
CGTTGCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCC
CAGCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCG
TCGTGATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGT
CGGAGCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGG
ACCAAGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAA
CTGGAATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATG
CCGGCGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGT
TTGAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTC
GCTGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGC
TATGGTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACGCA
AGCTTTCTAGACC
BO16556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PA | 606 | CG5059-RA | 73..603 | 17..547 | 2655 | 100 | Plus |
| CG5059-PC | 534 | CG5059-RC | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG5059-PB | 582 | CG5059-RB | 49..579 | 17..547 | 2655 | 100 | Plus |
| CG5059-PD | 534 | CG5059-RD | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..806 | 17..547 | 2655 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 210..740 | 17..547 | 2655 | 100 | Plus |
| CG5059-RB | 1344 | CG5059-RB | 77..607 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 264..17 | 1210 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 499..316 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 318..255 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 547..498 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:09:27 has no hits.
BO16556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:34 Download gff for
BO16556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-PD | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:20 Download gff for
BO16556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 13..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:44 Download gff for
BO16556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 75..613 | 13..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:44 Download gff for
BO16556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515329..20515383 | 499..552 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 319..498 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 257..318 | 100 | <- | Minus |
| 3L | 20515861..20516102 | 13..256 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:20 Download gff for
BO16556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 499..552 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 319..498 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 257..318 | 100 | <- | Minus |
| arm_3L | 20508961..20509202 | 13..256 | 99 | | Minus |
BO16556.complete Sequence
565 bp assembled on 2006-10-11
GenBank Submission: FJ633860
> BO16556.complete
GAAGTTATCAGTCGACATGGCTGGCATCAAGAGCCCCGACAGAATCACTC
CGTTGCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCC
CAGCGCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCG
TCGTGATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGT
CGGAGCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGG
ACCAAGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAA
CTGGAATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATG
CCGGCGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGT
TTGAAGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTC
GCTGCTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGC
TATGGTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACGCA
AGCTTTCTAGACCAT
BO16556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 534 | CG5059-PE | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG5059-RD | 534 | CG5059-PD | 1..531 | 17..547 | 2655 | 100 | Plus |
| CG5059-RB | 582 | CG5059-PB | 49..579 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..806 | 17..547 | 2655 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 210..740 | 17..547 | 2655 | 100 | Plus |
| CG5059-RB | 1344 | CG5059-RB | 77..607 | 17..547 | 2655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 264..17 | 1210 | 99.2 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 499..316 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 318..255 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 547..498 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:28:51 has no hits.
BO16556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:40 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RC | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:44 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 496..1034 | 13..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:31:46 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 77..607 | 17..549 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:41 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 496..1034 | 13..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:53 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 77..607 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:53 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515332..20515383 | 499..549 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 319..498 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 257..318 | 100 | <- | Minus |
| 3L | 20515861..20516100 | 17..256 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:31:46 Download gff for
BO16556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508432..20508483 | 499..549 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 319..498 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 257..318 | 100 | <- | Minus |
| arm_3L | 20508961..20509200 | 17..256 | 100 | | Minus |
BO16556.pep Sequence
Translation from 16 to 565
> BO16556.pep
MAGIKSPDRITPLPFNNGEEYLRLLREAQRESNQSSRVVSLASSRRDTPR
DSPKSPPNSPQSELCPDDELRNVYINYWTKGGDKQNAGNEDWLKNWNQPP
SSWNIEDSSRDAGDEGEKKKTNTGYSIRLKRLGSNSLFSREILYSLLVTN
VLSLLLGAGFGLWLSKRGILLTRVVIDASFLDH
BO16556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-PE | 177 | CG5059-PE | 1..177 | 1..177 | 927 | 100 | Plus |
| CG5059-PD | 177 | CG5059-PD | 1..177 | 1..177 | 927 | 100 | Plus |
| CG5059-PC | 177 | CG5059-PC | 1..177 | 1..177 | 927 | 100 | Plus |
| CG5059-PB | 193 | CG5059-PB | 17..193 | 1..177 | 927 | 100 | Plus |
| CG5059-PA | 201 | CG5059-PA | 25..201 | 1..177 | 927 | 100 | Plus |
