Clone Sequence Records
BO16557.3prime Sequence
579 bp (486 high quality bases) assembled on 2006-10-13
> BO16557.3prime
ATGGTCTAGAAAGCTTGCCAGGGTCTCCAGGCCGGGCAGCGGGAATTTCC
TGCTGAACTGGGCCACATTCTTGCGGATCTCGTCCACCTGGGCCTTGAGC
TCCACATTCTCGGCCAGCGTCTTGTGGTAATCGGTTATCTTGGGACTGCC
GGCCAGCTTGGCTGCCTGGACGCCAACCTTTAGGGCAGCATCGATGAAGG
CCACCACCTGCTCGATGTCCTGCTCGGCAAGGCCGCGAGTGGTCAGGGCC
GGTGTGCCCAGCCGGATGCCGGAGGGATTCATGGCGGACTTGTCGCCGGG
CACAGTGTTCTTGTTGCACGCGATGCCCACCTCCTCGAGGATGTACTCGG
CCTTGGCGCCGGTCAGGCCAGCCTTACGCACATCGACCAGCACCAAATGG
ACGTCGGTGCCGCCGGTGGCCACCTGATAGCCTCGCGAAATGAGGCCATC
GCACAGGGCCTTGGCATTCTTGAGCACCTGCGTCTGGTAAGCCTTGAATT
CGGGACTCTTGGCCTGCTTGAAGGCGGTGGCAATGCCAGCCACGGCGGTG
TTGTGCGGACCACCCTGGAGTGATGGAAA
BO16557.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-PA | 1614 | CG3011-RA | 1051..1611 | 579..19 | 2755 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RC | 1592 | CG3011-RC | 899..1459 | 579..19 | 2775 | 99.6 | Minus |
| CG3011-RB | 2054 | CG3011-RB | 1361..1921 | 579..19 | 2775 | 99.6 | Minus |
| CG3011-RA | 2001 | CG3011-RA | 1308..1868 | 579..19 | 2775 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913200..5913760 | 19..579 | 2775 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:24:33 has no hits.
BO16557.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:35 Download gff for
BO16557.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-PA | 1054..1614 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:06:30 Download gff for
BO16557.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 1311..1868 | 19..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:47:15 Download gff for
BO16557.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 1311..1868 | 19..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:47:15 Download gff for
BO16557.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5913200..5913757 | 19..576 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:06:30 Download gff for
BO16557.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5807233..5807790 | 19..576 | 99 | | Plus |
BO16557.5prime Sequence
633 bp (495 high quality bases) assembled on 2006-10-13
> BO16557.5prime
GAAGTTATCAGTCGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGC
TTCGGTTTTGCCTTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTT
AACTTCGAGACTGGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAA
AAAACAACCATCACCAACGCCATTCTTACCGGCGATCAGACGATATTCGG
ACTCCAAGCAGAGCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAA
ACCCCGCTGGCACAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGA
GAAGGAGCGCCAGCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCA
CCTCGGTGGCGGTTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTAC
TCCGAGGGATATCCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGA
CCGCATAGAGCTGCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGG
ACGATGAGAAGTGGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCC
AATCTGGCTGTCTACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGG
CCTGGATCTGCCCGATGGCGGTCACTTGACGCA
BO16557.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-PA | 1614 | CG3011-RA | 1..617 | 17..633 | 3085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 2001 | CG3011-RA | 255..874 | 14..633 | 3100 | 100 | Plus |
| CG3011-RC | 1592 | CG3011-RC | 1..465 | 169..633 | 2325 | 100 | Plus |
| CG3011-RB | 2054 | CG3011-RB | 516..927 | 222..633 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5914194..5914405 | 633..422 | 1060 | 100 | Minus |
| X | 23542271 | X | 5916263..5916472 | 223..14 | 1050 | 100 | Minus |
| X | 23542271 | X | 5914579..5914782 | 425..222 | 1020 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4955..4981 | 407..381 | 108 | 88.9 | Minus |
BO16557.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:36 Download gff for
BO16557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-PA | 1..616 | 17..632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:34 Download gff for
BO16557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 248..873 | 5..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:23 Download gff for
BO16557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 248..873 | 5..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:23 Download gff for
BO16557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5916263..5916481 | 3..223 | 98 | | Minus |
| X | 5914195..5914403 | 424..632 | 100 | <- | Minus |
| X | 5914581..5914780 | 224..423 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:34 Download gff for
BO16557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5808228..5808436 | 424..632 | 100 | <- | Minus |
| arm_X | 5808614..5808813 | 224..423 | 100 | <- | Minus |
| arm_X | 5810296..5810514 | 3..223 | 98 | | Minus |
BO16557.complete Sequence
1645 bp assembled on 2007-03-23
GenBank Submission: FJ633861
> BO16557.complete
GAAGTTATCAGTCGACATGCAGCGGGCGCGCTCTACACTGACACAAAAGC
TTCGGTTTTGCCTTAGTCGGGACCTGAACACCAAAGTTGGCAACCCGGTT
AACTTCGAGACTGGAAAGCTTAGCGGAGCTTTAACTCGCATCGCCGCCAA
AAAACAACCATCACCAACGCCATTCTTACCGGCGATCAGACGATATTCGG
ACTCCAAGCAGAGCACTTTGAAGAATATGGCCGATCAGAAACTGCTGCAA
ACCCCGCTGGCACAGGGCGATCCGGAGCTGGCCGAGCTGATCAAGAAGGA
GAAGGAGCGCCAGCGCGAAGGACTCGAGATGATCGCCAGTGAGAACTTCA
CCTCGGTGGCGGTTCTCGAGAGCCTGAGCTCCTGCCTGACCAACAAGTAC
TCCGAGGGATATCCCGGCAAGAGGTACTACGGTGGCAACGAGTACATCGA
CCGCATAGAGCTGCTCGCCCAGCAACGCGGACGCGAGCTGTTCAACCTGG
ACGATGAGAAGTGGGGCGTTAATGTGCAGCCTTATTCCGGATCCCCGGCC
AATCTGGCTGTCTACACGGGCGTCTGCCGGCCCCACGATCGCATCATGGG
CCTGGATCTGCCCGATGGCGGTCACTTGACGCACGGTTTCTTCACGCCCA
CCAAGAAGATATCGGCCACATCGATCTTCTTCGAGAGCATGCCGTACAAA
GTGAACCCGGAGACGGGCATCATCGATTACGATAAGTTGGCGGAGGCGGC
GAAGAATTTCCGGCCGCAGATCATCATTGCTGGCATATCGTGCTACTCCC
GTCTGCTGGACTATGCGCGTTTCCGACAGATTTGCGATGATGTGGGCGCC
TACCTGATGGCCGACATGGCCCATGTGGCGGGCATTGTGGCCGCGGGATT
GATACCATCGCCGTTCGAATGGGCCGACATTGTGACCACCACCACGCACA
AGACACTGCGAGGTCCGCGCGCCGGCGTGATCTTCTTCCGCAAGGGCGTG
CGCAGCACCAAGGCCAATGGAGACAAGGTACTCTACGATCTGGAGGAGCG
CATCAACCAGGCGGTGTTTCCATCACTCCAGGGTGGTCCGCACAACAACG
CCGTGGCTGGCATTGCCACCGCCTTCAAGCAGGCCAAGAGTCCCGAATTC
AAGGCCTACCAGACGCAGGTGCTCAAGAATGCCAAGGCCCTGTGCGATGG
CCTCATTTCGCGAGGCTATCAGGTGGCCACCGGCGGCACCGACGTCCATT
TGGTGCTGGTCGATGTGCGTAAGGCTGGCCTGACCGGCGCCAAGGCCGAG
TACATCCTCGAGGAGGTGGGCATCGCGTGCAACAAGAACACTGTGCCCGG
CGACAAGTCCGCCATGAATCCCTCCGGCATCCGGCTGGGCACACCGGCCC
TGACCACTCGCGGCCTTGCCGAGCAGGACATCGAGCAGGTGGTGGCCTTC
ATCGATGCTGCCCTAAAGGTTGGCGTCCAGGCAGCCAAGCTGGCCGGCAG
TCCCAAGATAACCGATTACCACAAGACGCTGGCCGAGAATGTGGAGCTCA
AGGCCCAGGTGGACGAGATCCGCAAGAATGTGGCCCAGTTCAGCAGGAAA
TTCCCGCTGCCCGGCCTGGAGACCCTGGCAAGCTTTCTAGACCAT
BO16557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 1614 | CG3011-PA | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| CG3011-RC | 1404 | CG3011-PC | 1..1401 | 227..1627 | 7005 | 100 | Plus |
| CG3011-RB | 1404 | CG3011-PB | 1..1401 | 227..1627 | 7005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 2001 | CG3011-RA | 255..1868 | 14..1627 | 8070 | 100 | Plus |
| CG3011-RC | 1592 | CG3011-RC | 1..1459 | 169..1627 | 7295 | 100 | Plus |
| CG3011-RB | 2054 | CG3011-RB | 516..1921 | 222..1627 | 7030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913200..5914405 | 1627..422 | 6030 | 100 | Minus |
| X | 23542271 | X | 5916263..5916472 | 223..14 | 1050 | 100 | Minus |
| X | 23542271 | X | 5914579..5914782 | 425..222 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:04:33 has no hits.
BO16557.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:48 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 1..1614 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:42 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 244..1864 | 5..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:15 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 258..1868 | 17..1629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:48 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 244..1864 | 5..1627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:50 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 258..1868 | 17..1629 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:50 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5913198..5914403 | 424..1629 | 99 | <- | Minus |
| X | 5914581..5914780 | 224..423 | 100 | <- | Minus |
| X | 5916263..5916469 | 17..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:15 Download gff for
BO16557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5807231..5808436 | 424..1629 | 99 | <- | Minus |
| arm_X | 5808614..5808813 | 224..423 | 100 | <- | Minus |
| arm_X | 5810296..5810502 | 17..223 | 100 | | Minus |
BO16557.pep Sequence
Translation from 16 to 1645
> BO16557.pep
MQRARSTLTQKLRFCLSRDLNTKVGNPVNFETGKLSGALTRIAAKKQPSP
TPFLPAIRRYSDSKQSTLKNMADQKLLQTPLAQGDPELAELIKKEKERQR
EGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGGNEYIDRIELL
AQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD
GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRP
QIIIAGISCYSRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPF
EWADIVTTTTHKTLRGPRAGVIFFRKGVRSTKANGDKVLYDLEERINQAV
FPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVLKNAKALCDGLISRG
YQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGDKSAM
NPSGIRLGTPALTTRGLAEQDIEQVVAFIDAALKVGVQAAKLAGSPKITD
YHKTLAENVELKAQVDEIRKNVAQFSRKFPLPGLETLASFLDH
BO16557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-PA | 537 | CG3011-PA | 1..537 | 1..537 | 2756 | 100 | Plus |
| CG3011-PC | 467 | CG3011-PC | 1..467 | 71..537 | 2402 | 100 | Plus |
| CG3011-PB | 467 | CG3011-PB | 1..467 | 71..537 | 2402 | 100 | Plus |
