Clone BO16560 Report

Search the DGRC for BO16560

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptHerp-RA
Protein status:BO16560.pep: validated full length
Sequenced Size:1429

Clone Sequence Records

BO16560.3prime Sequence

676 bp (665 high quality bases) assembled on 2006-10-13

> BO16560.3prime
ATGGTCTAGAAAGCTTGCGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTGA
AGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGCA
TTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAGC
AGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCAT
CTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTCA
TTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCAT
GCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTAT
TGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGACA
CCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAACA
ACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAATC
GCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTCC
TGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGATC
AGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGTA
CCTCCCCGAAGTTTCGCCCAGCAATC

BO16560.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 738..1395 676..19 3290 100 Minus
CG14536-PB 777 CG14536-RB 117..774 676..19 3290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 1284..1941 676..19 3290 100 Minus
Herp-RA 2117 CG14536-RA 1073..1730 676..19 3290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7796933..7797326 19..412 1970 100 Plus
2L 23513712 2L 7797397..7797660 413..676 1320 100 Plus
Blast to na_te.dros performed 2015-02-11 09:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 581..722 282..141 124 56.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 148..220 122 63 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 148..250 112 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6879 148..244 107 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2373 164..231 106 61.8 Plus

BO16560.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:40 Download gff for BO16560.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PB 117..777 18..676 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:01 Download gff for BO16560.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1073..1730 19..676 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:15 Download gff for BO16560.3prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1073..1730 19..676 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:15 Download gff for BO16560.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7796933..7797326 19..412 100 <- Plus
2L 7797397..7797660 413..676 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:01 Download gff for BO16560.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7796933..7797326 19..412 100 <- Plus
arm_2L 7797397..7797660 413..676 100   Plus

BO16560.5prime Sequence

781 bp (737 high quality bases) assembled on 2006-10-13

> BO16560.5prime
GAAGTTATCAGTCGACATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAA
CAGCCGCGGGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGT
GTCCGGCTGCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGT
GGACTCCGATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTC
TTATCTATCCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCG
GGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTA
CAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCA
AGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGAT
GCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACA
ACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCAC
ACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAG
CAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGC
TTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTA

BO16560.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14536-PA 1398 CG14536-RA 1..765 17..781 3825 100 Plus
CG14536-PB 777 CG14536-RB 1..144 638..781 720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 547..1311 17..781 3825 100 Plus
Herp-RA 2117 CG14536-RA 336..1100 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7798163..7798624 681..220 2310 100 Minus
2L 23513712 2L 7799309..7799512 220..17 1020 100 Minus
2L 23513712 2L 7797633..7797733 781..681 505 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:43:28 has no hits.

BO16560.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:40 Download gff for BO16560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14536-PA 1..764 17..780 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:24 Download gff for BO16560.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 328..1099 8..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:47 Download gff for BO16560.5prime
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 328..1099 8..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:47 Download gff for BO16560.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7797634..7797732 682..780 100 <- Minus
2L 7798163..7798623 221..681 100 <- Minus
2L 7799309..7799520 8..220 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:24 Download gff for BO16560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7797634..7797732 682..780 100 <- Minus
arm_2L 7798163..7798623 221..681 100 <- Minus
arm_2L 7799309..7799520 8..220 98   Minus

BO16560.complete Sequence

1429 bp assembled on 2006-10-11

GenBank Submission: FJ633862

> BO16560.complete
GAAGTTATCAGTCGACATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAA
CAGCCGCGGGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGT
GTCCGGCTGCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGT
GGACTCCGATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTC
TTATCTATCCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCG
GGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTA
CAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCA
AGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGAT
GCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACA
ACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCAC
ACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAG
CAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGC
TTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAG
CTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAGATTAATGGAGCG
CCGCAGAACAGAAATTTTCCCAACATTCAGGAGGAACCGGAAATGCACGA
CTGGCTGGATAGTTTCTTTAGCTTTACGCGATTGGCCATTTTTGTGACTG
TCCTGTACTTTAACTCCTCAGCGCTGCGTTGTTTACTGGTGGTGCTCATC
GCGGGTGCGATTTATCTATATCACATTGGTGTCCTTCGACGTCGCCGCGA
GCGGAACAATAACAACATAAATCGTAACAATAATGCTGGCGATGCGGCCG
CCTTTGCTGCAGTGCAGCAAATTCAGCGCATGATGGATGCGGCCGTGCAG
CGGGAGAACAACGATCCCCAGGCGGCCAATGAGCCTGGTGCAGTGCCAGC
GGCTGGACCTGCTGCTGCTGGTGAACAAGATGCAATCGATGCACCTCCGG
CTGGGGCTCCCGTTGCTCCAGCATCCGCTGCTAATCCAGAACCGACTGAC
GTTTCCGCGGAAGCTGTGGAACCACCAAATGCCAATAATTCTGTGATTTC
CGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCGCTGCTGCCCGAGG
CGCCGGCGCTCGCAAGCTTTCTAGACCAT

BO16560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 1398 CG14536-PC 1..1395 17..1411 6975 100 Plus
Herp-RA 1398 CG14536-PA 1..1395 17..1411 6975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-RC 2560 CG14536-RC 547..1941 17..1411 6975 100 Plus
Herp-RA 2117 CG14536-RA 336..1730 17..1411 6975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7798163..7798624 681..220 2310 100 Minus
2L 23513712 2L 7796933..7797326 1411..1018 1970 100 Minus
2L 23513712 2L 7797397..7797733 1017..681 1685 100 Minus
2L 23513712 2L 7799309..7799512 220..17 1020 100 Minus
Blast to na_te.dros performed 2014-11-26 21:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2419 1282..1210 122 63 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6834 1282..1180 112 58.3 Minus

BO16560.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:42 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 1..1398 17..1412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:46 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 327..1729 8..1411 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:17 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 336..1730 17..1413 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:42 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 327..1729 8..1411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:55 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
Herp-RA 336..1730 17..1413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:55 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7797397..7797732 682..1017 100 <- Minus
2L 7799309..7799512 17..220 100   Minus
2L 7796931..7797326 1018..1413 99 <- Minus
2L 7798163..7798623 221..681 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:17 Download gff for BO16560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7799309..7799512 17..220 100   Minus
arm_2L 7796931..7797326 1018..1413 99 <- Minus
arm_2L 7797397..7797732 682..1017 100 <- Minus
arm_2L 7798163..7798623 221..681 100 <- Minus

BO16560.pep Sequence

Translation from 16 to 1429

> BO16560.pep
MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC
WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ
QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH
QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ
ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR
NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF
FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN
INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA
AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF
VITFFTSLLPEAPALASFLDH

BO16560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Herp-PC 465 CG14536-PC 1..465 1..465 2411 100 Plus
Herp-PA 465 CG14536-PA 1..465 1..465 2411 100 Plus