Clone Sequence Records
BO16560.3prime Sequence
676 bp (665 high quality bases) assembled on 2006-10-13
> BO16560.3prime
ATGGTCTAGAAAGCTTGCGAGCGCCGGCGCCTCGGGCAGCAGCGAGGTGA
AGAACGTGATGACAAAGGTGCGCACAACGGAAATCACAGAATTATTGGCA
TTTGGTGGTTCCACAGCTTCCGCGGAAACGTCAGTCGGTTCTGGATTAGC
AGCGGATGCTGGAGCAACGGGAGCCCCAGCCGGAGGTGCATCGATTGCAT
CTTGTTCACCAGCAGCAGCAGGTCCAGCCGCTGGCACTGCACCAGGCTCA
TTGGCCGCCTGGGGATCGTTGTTCTCCCGCTGCACGGCCGCATCCATCAT
GCGCTGAATTTGCTGCACTGCAGCAAAGGCGGCCGCATCGCCAGCATTAT
TGTTACGATTTATGTTGTTATTGTTCCGCTCGCGGCGACGTCGAAGGACA
CCAATGTGATATAGATAAATCGCACCCGCGATGAGCACCACCAGTAAACA
ACGCAGCGCTGAGGAGTTAAAGTACAGGACAGTCACAAAAATGGCCAATC
GCGTAAAGCTAAAGAAACTATCCAGCCAGTCGTGCATTTCCGGTTCCTCC
TGAATGTTGGGAAAATTTCTGTTCTGCGGCGCTCCATTAATCTGAGGATC
AGCAGGTACCTGTGCCGCTGGGGCAGCAGCTGCTCCTGCCACTTGTTGTA
CCTCCCCGAAGTTTCGCCCAGCAATC
BO16560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 738..1395 | 676..19 | 3290 | 100 | Minus |
CG14536-PB | 777 | CG14536-RB | 117..774 | 676..19 | 3290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 1284..1941 | 676..19 | 3290 | 100 | Minus |
Herp-RA | 2117 | CG14536-RA | 1073..1730 | 676..19 | 3290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7796933..7797326 | 19..412 | 1970 | 100 | Plus |
2L | 23513712 | 2L | 7797397..7797660 | 413..676 | 1320 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 581..722 | 282..141 | 124 | 56.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 148..220 | 122 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 148..250 | 112 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6879 | 148..244 | 107 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2373 | 164..231 | 106 | 61.8 | Plus |
BO16560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:40 Download gff for
BO16560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PB | 117..777 | 18..676 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:01 Download gff for
BO16560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 1073..1730 | 19..676 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:15 Download gff for
BO16560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 1073..1730 | 19..676 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:15 Download gff for
BO16560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7796933..7797326 | 19..412 | 100 | <- | Plus |
2L | 7797397..7797660 | 413..676 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:01 Download gff for
BO16560.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7796933..7797326 | 19..412 | 100 | <- | Plus |
arm_2L | 7797397..7797660 | 413..676 | 100 | | Plus |
BO16560.5prime Sequence
781 bp (737 high quality bases) assembled on 2006-10-13
> BO16560.5prime
GAAGTTATCAGTCGACATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAA
CAGCCGCGGGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGT
GTCCGGCTGCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGT
GGACTCCGATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTC
TTATCTATCCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCG
GGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTA
CAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCA
AGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGAT
GCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACA
ACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCAC
ACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAG
CAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGC
TTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTA
BO16560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14536-PA | 1398 | CG14536-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
CG14536-PB | 777 | CG14536-RB | 1..144 | 638..781 | 720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 547..1311 | 17..781 | 3825 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 336..1100 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7798163..7798624 | 681..220 | 2310 | 100 | Minus |
2L | 23513712 | 2L | 7799309..7799512 | 220..17 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 7797633..7797733 | 781..681 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:43:28 has no hits.
BO16560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:40 Download gff for
BO16560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14536-PA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:24 Download gff for
BO16560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 328..1099 | 8..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:47 Download gff for
BO16560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 328..1099 | 8..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:47 Download gff for
BO16560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7797634..7797732 | 682..780 | 100 | <- | Minus |
2L | 7798163..7798623 | 221..681 | 100 | <- | Minus |
2L | 7799309..7799520 | 8..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:24 Download gff for
BO16560.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7797634..7797732 | 682..780 | 100 | <- | Minus |
arm_2L | 7798163..7798623 | 221..681 | 100 | <- | Minus |
arm_2L | 7799309..7799520 | 8..220 | 98 | | Minus |
BO16560.complete Sequence
1429 bp assembled on 2006-10-11
GenBank Submission: FJ633862
> BO16560.complete
GAAGTTATCAGTCGACATGGAGGAGAACGCCGCCCCACCCGCAGCCGCAA
CAGCCGCGGGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGT
GTCCGGCTGCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGT
GGACTCCGATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTC
TTATCTATCCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCG
GGCAAGCTATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTA
CAAGGATGTCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCA
AGCAAGTGATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGAT
GCGGTTCCAGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACA
ACGTCATGCTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCAC
ACGTGACGGGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAG
CAGAGCCAGGGAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGC
TTTGTTCCAGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTT
ACGCGCAGTACATGCAGCAGTTGACTCTACGTTCTACGTTGCCCGGTTCG
AACCAATCTGGCTTGCCGCCACCGACTCAACCCCTGTTGCCCTCAGTCCC
ACTGATTGCTGGGCGAAACTTCGGGGAGGTACAACAAGTGGCAGGAGCAG
CTGCTGCCCCAGCGGCACAGGTACCTGCTGATCCTCAGATTAATGGAGCG
CCGCAGAACAGAAATTTTCCCAACATTCAGGAGGAACCGGAAATGCACGA
CTGGCTGGATAGTTTCTTTAGCTTTACGCGATTGGCCATTTTTGTGACTG
TCCTGTACTTTAACTCCTCAGCGCTGCGTTGTTTACTGGTGGTGCTCATC
GCGGGTGCGATTTATCTATATCACATTGGTGTCCTTCGACGTCGCCGCGA
GCGGAACAATAACAACATAAATCGTAACAATAATGCTGGCGATGCGGCCG
CCTTTGCTGCAGTGCAGCAAATTCAGCGCATGATGGATGCGGCCGTGCAG
CGGGAGAACAACGATCCCCAGGCGGCCAATGAGCCTGGTGCAGTGCCAGC
GGCTGGACCTGCTGCTGCTGGTGAACAAGATGCAATCGATGCACCTCCGG
CTGGGGCTCCCGTTGCTCCAGCATCCGCTGCTAATCCAGAACCGACTGAC
GTTTCCGCGGAAGCTGTGGAACCACCAAATGCCAATAATTCTGTGATTTC
CGTTGTGCGCACCTTTGTCATCACGTTCTTCACCTCGCTGCTGCCCGAGG
CGCCGGCGCTCGCAAGCTTTCTAGACCAT
BO16560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 1398 | CG14536-PC | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Herp-RA | 1398 | CG14536-PA | 1..1395 | 17..1411 | 6975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-RC | 2560 | CG14536-RC | 547..1941 | 17..1411 | 6975 | 100 | Plus |
Herp-RA | 2117 | CG14536-RA | 336..1730 | 17..1411 | 6975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7798163..7798624 | 681..220 | 2310 | 100 | Minus |
2L | 23513712 | 2L | 7796933..7797326 | 1411..1018 | 1970 | 100 | Minus |
2L | 23513712 | 2L | 7797397..7797733 | 1017..681 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 7799309..7799512 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2419 | 1282..1210 | 122 | 63 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6834 | 1282..1180 | 112 | 58.3 | Minus |
BO16560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:42 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 1..1398 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:46 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 327..1729 | 8..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:17 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 336..1730 | 17..1413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:42 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 327..1729 | 8..1411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:55 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Herp-RA | 336..1730 | 17..1413 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:55 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7797397..7797732 | 682..1017 | 100 | <- | Minus |
2L | 7799309..7799512 | 17..220 | 100 | | Minus |
2L | 7796931..7797326 | 1018..1413 | 99 | <- | Minus |
2L | 7798163..7798623 | 221..681 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:17 Download gff for
BO16560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7799309..7799512 | 17..220 | 100 | | Minus |
arm_2L | 7796931..7797326 | 1018..1413 | 99 | <- | Minus |
arm_2L | 7797397..7797732 | 682..1017 | 100 | <- | Minus |
arm_2L | 7798163..7798623 | 221..681 | 100 | <- | Minus |
BO16560.pep Sequence
Translation from 16 to 1429
> BO16560.pep
MEENAAPPAAATAAGCDAATRQKNPETSVRLLIKSSNQQYEDLNVDSDLC
WTVQRLKKHLSLIYPGKPLIQDQKLIYSGKLLDDSQKISEVIRSYKDVYQ
QHHIFHLVCASKQVIRPAAKAPTVPQKDAVPAGPEVTGNANELRQRHAPH
QQQAQQGNAGPHVTGDIGLANPWTHFWQQSQGAAPAANASASPHALFQQQ
ALIYNAWMQQAYAQYMQQLTLRSTLPGSNQSGLPPPTQPLLPSVPLIAGR
NFGEVQQVAGAAAAPAAQVPADPQINGAPQNRNFPNIQEEPEMHDWLDSF
FSFTRLAIFVTVLYFNSSALRCLLVVLIAGAIYLYHIGVLRRRRERNNNN
INRNNNAGDAAAFAAVQQIQRMMDAAVQRENNDPQAANEPGAVPAAGPAA
AGEQDAIDAPPAGAPVAPASAANPEPTDVSAEAVEPPNANNSVISVVRTF
VITFFTSLLPEAPALASFLDH
BO16560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Herp-PC | 465 | CG14536-PC | 1..465 | 1..465 | 2411 | 100 | Plus |
Herp-PA | 465 | CG14536-PA | 1..465 | 1..465 | 2411 | 100 | Plus |