Clone Sequence Records
BO16562.5prime Sequence
344 bp (344 high quality bases) assembled on 2006-10-13
> BO16562.5prime
GAAGTTATCAGTCGACATGAGGGCACTGAAAACGAAAATTGCCAACGAAT
TTCATTCATTTGTCATGCCCTTTTATGGCCAACCGATGAAATGTTCGAGA
ACAGTAACAGCCATAAACAATTTCCAGCGTTTTTCAGCTGTTTACAAACA
GCAAAGAAATGGTTTGTGGGCTAAAATGATTTTGTTGTTTGCCTCGTTTG
AATTGAGCCATTTTACCGGCTGTGATTTGGCTAAAAGTTCAATGTACATA
AATGTGAATAGTGTGGATGGGGCTAATTTCCGATTTGCACTCACTTCCTC
TCGCGGGAAATGCAATCATAATCTCGACGCAAGCTTTCTAGACC
BO16562.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30477-PA | 315 | CG30477-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 03:50:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14642724..14643035 | 17..328 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:50:04 has no hits.
BO16562.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:43 Download gff for
BO16562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30477-PA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:50 Download gff for
BO16562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14642724..14643041 | 17..336 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:50 Download gff for
BO16562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14642724..14643041 | 17..336 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:30 Download gff for
BO16562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10530229..10530546 | 17..336 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:30 Download gff for
BO16562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10530229..10530546 | 17..336 | 98 | | Plus |
BO16562.3prime Sequence
344 bp (344 high quality bases) assembled on 2006-10-13
> BO16562.3prime
ATGGTCTAGAAAGCTTGCGTCGAGATTATGATTGCATTTCCCGCGAGAGG
AAGTGAGTGCAAATCGGAAATTAGCCCCATCCACACTATTCACATTTATG
TACATTGAACTTTTAGCCAAATCACAGCCGGTAAAATGGCTCAATTCAAA
CGAGGCAAACAACAAAATCATTTTAGCCCACAAACCATTTCTTTGCTGTT
TGTAAACAGCTGAAAAACGCTGGAAATTGTTTATGGCTGTTACTGTTCTC
GAACATTTCATCGGTTGGCCATAAAAGGGCATGACAAATGAATGAAATTC
GTTGGCAATTTTCGTTTTCAGTGCCCTCATGTCGACTGATAACT
BO16562.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30477-PA | 315 | CG30477-RA | 1..312 | 330..19 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-08 11:43:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14642724..14643035 | 330..19 | 1560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:43:42 has no hits.
BO16562.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:43 Download gff for
BO16562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30477-PA | 1..315 | 15..330 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:48 Download gff for
BO16562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14642724..14643041 | 11..330 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:48 Download gff for
BO16562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14642724..14643041 | 11..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:26 Download gff for
BO16562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10530229..10530546 | 11..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:26 Download gff for
BO16562.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10530229..10530546 | 11..330 | 98 | | Minus |
BO16562.complete Sequence
346 bp assembled on 2006-10-11
GenBank Submission: FJ633863
> BO16562.complete
GAAGTTATCAGTCGACATGAGGGCACTGAAAACGAAAATTGCCAACGAAT
TTCATTCATTTGTCATGCCCTTTTATGGCCAACCGATGAAATGTTCGAGA
ACAGTAACAGCCATAAACAATTTCCAGCGTTTTTCAGCTGTTTACAAACA
GCAAAGAAATGGTTTGTGGGCTAAAATGATTTTGTTGTTTGCCTCGTTTG
AATTGAGCCATTTTACCGGCTGTGATTTGGCTAAAAGTTCAATGTACATA
AATGTGAATAGTGTGGATGGGGCTAATTTCCGATTTGCACTCACTTCCTC
TCGCGGGAAATGCAATCATAATCTCGACGCAAGCTTTCTAGACCAT
BO16562.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 16:06:51 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 16:06:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14642724..14643035 | 17..328 | 1560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:06:50 has no hits.
BO16562.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:26:44 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:30 Download gff for
BO16562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14642724..14643035 | 17..330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:30 Download gff for
BO16562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14642724..14643035 | 17..330 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:38 Download gff for
BO16562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10530229..10530540 | 17..330 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:38 Download gff for
BO16562.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10530229..10530540 | 17..330 | 99 | | Plus |
BO16562.pep Sequence
Translation from 16 to 346
> BO16562.pep
MRALKTKIANEFHSFVMPFYGQPMKCSRTVTAINNFQRFSAVYKQQRNGL
WAKMILLFASFELSHFTGCDLAKSSMYINVNSVDGANFRFALTSSRGKCN
HNLDASFLDH
Sequence BO16562.pep has no blast hits.
