Clone BO16564 Report

Search the DGRC for BO16564

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptDrep-1-RA
Protein status:BO16564.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO16564.3prime Sequence

698 bp (568 high quality bases) assembled on 2006-10-13

> BO16564.3prime
ATGGTCTAGAAAGCTTGCGATGTCGCCGTTGGCATTTGGATTTCTATTTG
GATTGGCATTGGCCTCATTGGCAGCCGCTTCGGCAGCGGAGGATCCCATC
GCTCCACTGGCTGTGGCGCAAGTGGTGGTGGCCTCGCCCACCGTAATTGT
TATCGTCGTGTTTTGATTGTCGCACTGCACCACCTCGATGGTGCGGGTGT
TGCTCGTCGTTGTGGTGCTCATCTGTCCACTCTCCGCCTCGTTCAACTGC
CGTCCAATCTCCCGGTCAATGGCCTCCGCATCCTCGGGATAACGTTCCGA
GCAGAAAATGGCACCAGCTTTCAATAGCTTCAGCAGATTTAAACGATCCT
CGGCATTCCGCTTGGCACACAATGGCCTTCCCGCATCCTTGAGCTGCTCC
ATAAACTCCTTTCCCGTGATGTCCACCAACGAGTTGGGATCCATGTTGGA
GAGTGAGTCCAGATCGGCATCGTTCATCACGGACACGTTGCAGAGGTTGT
TCTGCAGCTGGCCCACCAACTGGCGGATGCGAGCCGACTCCGAGTTGTTG
GCATCGGTGGTGTCGCCCTCGCCTCCTCCGTTCAGCTCTCCGTTTCCAGT
TTCTGCCTCGTTGCCATGTGGAGTGGTTATCGTCACGTAGTGAGTGGGAT
CGATCCAATGTTCTCCGGGAAAGACGGCCACCAGTTCCGTATTCTCGT

BO16564.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8357-PA 894 Rep1-RA 212..891 698..19 3375 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 2153 CG8357-RB 464..1143 698..19 3385 99.9 Minus
Drep-1-RA 2153 CG8357-RA 464..1143 698..19 3385 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048803..12049162 378..19 1800 100 Minus
2R 25286936 2R 12048475..12048747 648..376 1350 99.6 Minus
2R 25286936 2R 12048142..12048191 698..649 250 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:05:45 has no hits.

BO16564.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:46 Download gff for BO16564.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8357-PA 212..894 16..698 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:51 Download gff for BO16564.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 464..1148 12..698 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:28 Download gff for BO16564.3prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 464..1148 12..698 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:28 Download gff for BO16564.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12048142..12048191 649..698 100 -> Minus
2R 12048475..12048746 377..648 99 -> Minus
2R 12048805..12049167 12..376 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:51 Download gff for BO16564.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7935647..7935696 649..698 100 -> Minus
arm_2R 7935980..7936251 377..648 99 -> Minus
arm_2R 7936310..7936672 12..376 98   Minus

BO16564.5prime Sequence

763 bp (650 high quality bases) assembled on 2006-10-13

> BO16564.5prime
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAA

BO16564.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8357-PA 894 Rep1-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 2153 CG8357-RB 252..999 16..763 3740 100 Plus
Drep-1-RA 2153 CG8357-RA 252..999 16..763 3740 100 Plus
Drep-3-RA 1799 CG8364-RA 649..765 173..289 180 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048475..12048747 278..550 1365 100 Plus
2R 25286936 2R 12047976..12048191 62..277 1080 100 Plus
2R 25286936 2R 12048803..12049018 548..763 1080 100 Plus
2R 25286936 2R 12044863..12044910 16..63 240 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:44:07 has no hits.

BO16564.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:47 Download gff for BO16564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8357-PA 1..745 17..761 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:28 Download gff for BO16564.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 249..997 10..761 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:50 Download gff for BO16564.5prime
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 249..997 10..761 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:50 Download gff for BO16564.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12044860..12044908 10..61 94 -> Plus
2R 12047976..12048191 62..277 100 -> Plus
2R 12048475..12048746 278..549 100 -> Plus
2R 12048805..12049016 550..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:28 Download gff for BO16564.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7932365..7932413 10..61 94 -> Plus
arm_2R 7935481..7935696 62..277 100 -> Plus
arm_2R 7935980..7936251 278..549 100 -> Plus
arm_2R 7936310..7936521 550..761 100   Plus

BO16564.complete Sequence

925 bp assembled on 2006-10-11

GenBank Submission: FJ633864

> BO16564.complete
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAAAACACGACGATAACAATTACGGTGGGCGAGGCCACCA
CCACTTGCGCCACAGCCAGTGGAGCGATGGGATCCTCCGCTGCCGAAGCG
GCTGCCAATGAGGCCAATGCCAATCCAAATAGAAATCCAAATGCCAACGG
CGACATCGCAAGCTTTCTAGACCAT

BO16564.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 921 CG8357-PB 1..891 17..907 4455 100 Plus
Drep-1-RA 894 CG8357-PA 1..891 17..907 4455 100 Plus
Drep-3-RA 801 CG8364-PA 472..588 173..289 180 76.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-RB 2153 CG8357-RB 252..1143 16..907 4460 100 Plus
Drep-1-RA 2153 CG8357-RA 252..1143 16..907 4460 100 Plus
Drep-3-RA 1799 CG8364-RA 649..765 173..289 180 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12048803..12049162 548..907 1800 100 Plus
2R 25286936 2R 12048475..12048747 278..550 1365 100 Plus
2R 25286936 2R 12047976..12048191 62..277 1080 100 Plus
2R 25286936 2R 12044863..12044910 16..63 240 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:49:25 has no hits.

BO16564.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:08 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 1..894 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:14 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 247..1146 10..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:53 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 253..1143 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:09 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
Rep1-RA 247..1146 10..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:45 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
Drep-1-RA 253..1143 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:45 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12044864..12044908 17..61 100 -> Plus
2R 12047976..12048191 62..277 100 -> Plus
2R 12048475..12048746 278..549 100 -> Plus
2R 12048805..12049162 550..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:53 Download gff for BO16564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7932369..7932413 17..61 100 -> Plus
arm_2R 7935481..7935696 62..277 100 -> Plus
arm_2R 7935980..7936251 278..549 100 -> Plus
arm_2R 7936310..7936667 550..909 99   Plus

BO16564.pep Sequence

Translation from 16 to 925

> BO16564.pep
METAANSGDSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP
TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWIDPTHYVTITTPHGN
EAGTGNGELNGGGEGDTTDANNSESARIRQLVGQLQNNLCNVSVMNDADL
DSLSNMDPNSLVDITGKEFMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGA
IFCSERYPEDAEAIDREIGRQLNEAESGQMSTTTTSNTRTIEVVQCDNQN
TTITITVGEATTTCATASGAMGSSAAEAAANEANANPNRNPNANGDIASF
LDH

BO16564.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
Drep-1-PA 297 CG8357-PA 1..297 1..297 1538 100 Plus
Drep-1-PB 306 CG8357-PB 1..297 1..297 1538 100 Plus
Drep-3-PA 266 CG8364-PA 116..245 9..168 382 51.9 Plus
Drep-3-PB 266 CG8364-PB 116..245 9..168 382 51.9 Plus