Clone Sequence Records
BO16564.3prime Sequence
698 bp (568 high quality bases) assembled on 2006-10-13
> BO16564.3prime
ATGGTCTAGAAAGCTTGCGATGTCGCCGTTGGCATTTGGATTTCTATTTG
GATTGGCATTGGCCTCATTGGCAGCCGCTTCGGCAGCGGAGGATCCCATC
GCTCCACTGGCTGTGGCGCAAGTGGTGGTGGCCTCGCCCACCGTAATTGT
TATCGTCGTGTTTTGATTGTCGCACTGCACCACCTCGATGGTGCGGGTGT
TGCTCGTCGTTGTGGTGCTCATCTGTCCACTCTCCGCCTCGTTCAACTGC
CGTCCAATCTCCCGGTCAATGGCCTCCGCATCCTCGGGATAACGTTCCGA
GCAGAAAATGGCACCAGCTTTCAATAGCTTCAGCAGATTTAAACGATCCT
CGGCATTCCGCTTGGCACACAATGGCCTTCCCGCATCCTTGAGCTGCTCC
ATAAACTCCTTTCCCGTGATGTCCACCAACGAGTTGGGATCCATGTTGGA
GAGTGAGTCCAGATCGGCATCGTTCATCACGGACACGTTGCAGAGGTTGT
TCTGCAGCTGGCCCACCAACTGGCGGATGCGAGCCGACTCCGAGTTGTTG
GCATCGGTGGTGTCGCCCTCGCCTCCTCCGTTCAGCTCTCCGTTTCCAGT
TTCTGCCTCGTTGCCATGTGGAGTGGTTATCGTCACGTAGTGAGTGGGAT
CGATCCAATGTTCTCCGGGAAAGACGGCCACCAGTTCCGTATTCTCGT
BO16564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8357-PA | 894 | Rep1-RA | 212..891 | 698..19 | 3375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 2153 | CG8357-RB | 464..1143 | 698..19 | 3385 | 99.9 | Minus |
Drep-1-RA | 2153 | CG8357-RA | 464..1143 | 698..19 | 3385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12048803..12049162 | 378..19 | 1800 | 100 | Minus |
2R | 25286936 | 2R | 12048475..12048747 | 648..376 | 1350 | 99.6 | Minus |
2R | 25286936 | 2R | 12048142..12048191 | 698..649 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:05:45 has no hits.
BO16564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:46 Download gff for
BO16564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8357-PA | 212..894 | 16..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:51 Download gff for
BO16564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 464..1148 | 12..698 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:28 Download gff for
BO16564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 464..1148 | 12..698 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:28 Download gff for
BO16564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12048142..12048191 | 649..698 | 100 | -> | Minus |
2R | 12048475..12048746 | 377..648 | 99 | -> | Minus |
2R | 12048805..12049167 | 12..376 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:51 Download gff for
BO16564.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7935647..7935696 | 649..698 | 100 | -> | Minus |
arm_2R | 7935980..7936251 | 377..648 | 99 | -> | Minus |
arm_2R | 7936310..7936672 | 12..376 | 98 | | Minus |
BO16564.5prime Sequence
763 bp (650 high quality bases) assembled on 2006-10-13
> BO16564.5prime
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAA
BO16564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8357-PA | 894 | Rep1-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 2153 | CG8357-RB | 252..999 | 16..763 | 3740 | 100 | Plus |
Drep-1-RA | 2153 | CG8357-RA | 252..999 | 16..763 | 3740 | 100 | Plus |
Drep-3-RA | 1799 | CG8364-RA | 649..765 | 173..289 | 180 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12048475..12048747 | 278..550 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 12047976..12048191 | 62..277 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 12048803..12049018 | 548..763 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 12044863..12044910 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:44:07 has no hits.
BO16564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:47 Download gff for
BO16564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8357-PA | 1..745 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:28 Download gff for
BO16564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 249..997 | 10..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:50 Download gff for
BO16564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 249..997 | 10..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:50 Download gff for
BO16564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12044860..12044908 | 10..61 | 94 | -> | Plus |
2R | 12047976..12048191 | 62..277 | 100 | -> | Plus |
2R | 12048475..12048746 | 278..549 | 100 | -> | Plus |
2R | 12048805..12049016 | 550..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:28 Download gff for
BO16564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7932365..7932413 | 10..61 | 94 | -> | Plus |
arm_2R | 7935481..7935696 | 62..277 | 100 | -> | Plus |
arm_2R | 7935980..7936251 | 278..549 | 100 | -> | Plus |
arm_2R | 7936310..7936521 | 550..761 | 100 | | Plus |
BO16564.complete Sequence
925 bp assembled on 2006-10-11
GenBank Submission: FJ633864
> BO16564.complete
GAAGTTATCAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAA
AGCCTTTCAAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGC
GCCTCCAGTCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAA
GTGCGACCACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCG
ATGATGAGGAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCC
GTCTTTCCCGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAAC
CACTCCACATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAG
GAGGCGAGGGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATC
CGCCAGTTGGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGAT
GAACGATGCCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGG
TGGACATCACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGG
CCATTGTGTGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCT
ATTGAAAGCTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGG
AGGCCATTGACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGA
CAGATGAGCACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCA
GTGCGACAATCAAAACACGACGATAACAATTACGGTGGGCGAGGCCACCA
CCACTTGCGCCACAGCCAGTGGAGCGATGGGATCCTCCGCTGCCGAAGCG
GCTGCCAATGAGGCCAATGCCAATCCAAATAGAAATCCAAATGCCAACGG
CGACATCGCAAGCTTTCTAGACCAT
BO16564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 921 | CG8357-PB | 1..891 | 17..907 | 4455 | 100 | Plus |
Drep-1-RA | 894 | CG8357-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Drep-3-RA | 801 | CG8364-PA | 472..588 | 173..289 | 180 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-RB | 2153 | CG8357-RB | 252..1143 | 16..907 | 4460 | 100 | Plus |
Drep-1-RA | 2153 | CG8357-RA | 252..1143 | 16..907 | 4460 | 100 | Plus |
Drep-3-RA | 1799 | CG8364-RA | 649..765 | 173..289 | 180 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12048803..12049162 | 548..907 | 1800 | 100 | Plus |
2R | 25286936 | 2R | 12048475..12048747 | 278..550 | 1365 | 100 | Plus |
2R | 25286936 | 2R | 12047976..12048191 | 62..277 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 12044863..12044910 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:25 has no hits.
BO16564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:08 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep1-RA | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:14 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep1-RA | 247..1146 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:53 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 253..1143 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:09 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rep1-RA | 247..1146 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:45 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drep-1-RA | 253..1143 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:45 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12044864..12044908 | 17..61 | 100 | -> | Plus |
2R | 12047976..12048191 | 62..277 | 100 | -> | Plus |
2R | 12048475..12048746 | 278..549 | 100 | -> | Plus |
2R | 12048805..12049162 | 550..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:53 Download gff for
BO16564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7932369..7932413 | 17..61 | 100 | -> | Plus |
arm_2R | 7935481..7935696 | 62..277 | 100 | -> | Plus |
arm_2R | 7935980..7936251 | 278..549 | 100 | -> | Plus |
arm_2R | 7936310..7936667 | 550..909 | 99 | | Plus |
BO16564.pep Sequence
Translation from 16 to 925
> BO16564.pep
METAANSGDSKKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP
TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWIDPTHYVTITTPHGN
EAGTGNGELNGGGEGDTTDANNSESARIRQLVGQLQNNLCNVSVMNDADL
DSLSNMDPNSLVDITGKEFMEQLKDAGRPLCAKRNAEDRLNLLKLLKAGA
IFCSERYPEDAEAIDREIGRQLNEAESGQMSTTTTSNTRTIEVVQCDNQN
TTITITVGEATTTCATASGAMGSSAAEAAANEANANPNRNPNANGDIASF
LDH
BO16564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drep-1-PA | 297 | CG8357-PA | 1..297 | 1..297 | 1538 | 100 | Plus |
Drep-1-PB | 306 | CG8357-PB | 1..297 | 1..297 | 1538 | 100 | Plus |
Drep-3-PA | 266 | CG8364-PA | 116..245 | 9..168 | 382 | 51.9 | Plus |
Drep-3-PB | 266 | CG8364-PB | 116..245 | 9..168 | 382 | 51.9 | Plus |