Clone Sequence Records
BO16569.3prime Sequence
821 bp (806 high quality bases) assembled on 2006-10-13
> BO16569.3prime
ATGGTCTAGAAAGCTTGCCGCATCGTAGATCTGAAGATTGTCAAAGTCAT
CGAGCGTGTCCTCCGACCCCGAAGTGGTCAAGTCCGACAGCTCATCAAGG
CACTTCTGCCGCTTGCGGACATTCCAGTGCAGACCCTCGGCCAGGGAGTC
AAACCAATCGGAGATTTGGTCCTGGGAGCAAATGCTGGGCACGGGATAGA
TTGAGGTGGTCACTCGCAGGCTGTCCCCATGGTTCAGCTCCTGGTCGTTG
CGTCCGTCGAAGGAAACGCGTGAGGTGTTGCGGCTATCAGGTGAAATTGA
TATCTTTAGCTCCACTCCGGCGGGCACCACAATGGGCCTGAAGCTCAGCG
AGTGCGGGCAAATGGGCGTCACCAAAATGGCCGGCACGGAGGGATGGATC
ATGGAGGCACCGGCTGCTGCCGCATATGCTGTACTTCCCGTGGGCGTCGA
TACGATCAGGCCATCGCCCTGCACCGACGTAATGTATTTGCCCTCCAAGA
AGATATCAATGTTGCTCAGGTACGGCGAGGGTCCTCGGTTGATGACCACC
TCGTTAAGCACCAGGATGCTATTGTTGTGGCCATTGTTATTATTGCTGCC
AGCTTTTCCTGTTTGTCCGTTGTTAAGCTCCACGTAGTTGAGCTGCCTTT
GGAAACTCGGTATCAGGAGATTACCACCCACCGAGTGCAGAAGCGATTCC
TTGCGGCGTTCGCCCTTGCGGTGGATGGAGCAGCGCAGGCGACTACGTAG
CGTTAGGGCAGCATGACCCTCCAGGACATTGGTCACCTGTTCCTGGAAGT
TGTCGCACTGGAAGGGCGTAA
BO16569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PA | 1563 | CG6145-RA | 758..1560 | 821..19 | 4015 | 100 | Minus |
| CG6145-PC | 1647 | CG6145-RC | 842..1644 | 821..19 | 4015 | 100 | Minus |
| CG6145-PB | 1263 | CG6145-RB | 458..1260 | 821..19 | 4015 | 100 | Minus |
| CG33156-PC | 1128 | CG33156-RC | 664..846 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 901..1083 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 1009..1191 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 898..1080 | 480..298 | 465 | 90.1 | Minus |
| CG33156-PC | 1128 | CG33156-RC | 912..1061 | 232..83 | 200 | 85.3 | Minus |
| CG33156-PA | 1365 | CG33156-RA | 1149..1298 | 232..83 | 200 | 85.3 | Minus |
| CG33156-PE | 1473 | CG33156-RE | 1257..1406 | 232..83 | 200 | 85.3 | Minus |
| CG33156-PB | 1362 | CG33156-RB | 1146..1295 | 232..83 | 200 | 85.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RF | 1989 | CG6145-RF | 793..1595 | 821..19 | 4015 | 100 | Minus |
| CG6145-RE | 1843 | CG6145-RE | 647..1449 | 821..19 | 4015 | 100 | Minus |
| CG6145-RB | 1826 | CG6145-RB | 630..1432 | 821..19 | 4015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538198..13538715 | 304..821 | 2590 | 100 | Plus |
| 2R | 25286936 | 2R | 13537765..13538051 | 19..305 | 1435 | 100 | Plus |
| 2R | 25286936 | 2R | 13548954..13549224 | 304..574 | 770 | 85.6 | Plus |
| 2R | 25286936 | 2R | 13548644..13548896 | 53..305 | 545 | 81 | Plus |
| 2R | 25286936 | 2R | 13549306..13549391 | 731..816 | 205 | 82.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 08:55:47 has no hits.
BO16569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:53 Download gff for
BO16569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PB | 460..1263 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 15:04:14 Download gff for
BO16569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 630..1435 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:49:59 Download gff for
BO16569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RB | 630..1435 | 15..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:49:59 Download gff for
BO16569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13537762..13538049 | 15..303 | 99 | <- | Plus |
| 2R | 13538198..13538715 | 304..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 15:04:14 Download gff for
BO16569.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425267..9425554 | 15..303 | 99 | <- | Plus |
| arm_2R | 9425703..9426220 | 304..821 | 100 | | Plus |
BO16569.5prime Sequence
764 bp (713 high quality bases) assembled on 2006-10-13
> BO16569.5prime
GAAGTTATCAGTCGACATGACGTGCCTGTCGGACATTGACCTGGCCACCC
TGCACCAGCATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGT
GGCACTGGCCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAA
TGCGTCGCTAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCA
GCACAAGGGCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGT
CCAGGAAACATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTT
CGATTCCACGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAA
GTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATT
ATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCG
TTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGG
ACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAG
GAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCT
GCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAG
TGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGNATCTCCGTGAA
AAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGA
CTTTATCGTCTGCC
BO16569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PC | 1647 | CG6145-RC | 1..748 | 17..764 | 3721 | 99.8 | Plus |
| CG6145-PA | 1563 | CG6145-RA | 240..664 | 340..764 | 2106 | 99.7 | Plus |
| CG6145-PB | 1263 | CG6145-RB | 1..364 | 401..764 | 1801 | 99.7 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 206..326 | 372..492 | 330 | 90.9 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 209..329 | 372..492 | 330 | 90.9 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 317..437 | 372..492 | 330 | 90.9 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 1..92 | 401..492 | 260 | 91.3 | Plus |
| CG33156-PB | 1362 | CG33156-RB | 367..422 | 530..585 | 155 | 91 | Plus |
| CG33156-PA | 1365 | CG33156-RA | 370..425 | 530..585 | 155 | 91 | Plus |
| CG33156-PE | 1473 | CG33156-RE | 478..533 | 530..585 | 155 | 91 | Plus |
| CG33156-PC | 1128 | CG33156-RC | 133..188 | 530..585 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 2260 | CG6145-RC | 221..970 | 15..764 | 3739 | 99.9 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 111..536 | 339..764 | 2119 | 99.8 | Plus |
| CG6145-RF | 1989 | CG6145-RF | 275..699 | 340..764 | 2114 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538972..13539349 | 717..340 | 1879 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13542160..13542485 | 340..15 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 13549668..13549916 | 585..340 | 580 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13538809..13538855 | 764..718 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 19:01:45 has no hits.
BO16569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:54 Download gff for
BO16569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-PC | 1..748 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:30:04 Download gff for
BO16569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 221..970 | 15..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:47:02 Download gff for
BO16569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 221..970 | 15..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:47:02 Download gff for
BO16569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13538809..13538855 | 718..764 | 100 | <- | Minus |
| 2R | 13538972..13539349 | 340..717 | 99 | <- | Minus |
| 2R | 13542161..13542485 | 15..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:30:04 Download gff for
BO16569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9426314..9426360 | 718..764 | 100 | <- | Minus |
| arm_2R | 9426477..9426854 | 340..717 | 99 | <- | Minus |
| arm_2R | 9429666..9429990 | 15..339 | 100 | | Minus |
BO16569.complete Sequence
1678 bp assembled on 2007-10-05
GenBank Submission: FJ633865
> BO16569.complete
GAAGTTATCAGTCGACATGACGTGCCTGTCGGACATTGACCTGGCCACCC
TGCACCAGCATCGCCTGGAGGAGATCTTCAGCTACAAGCTGGCTTGGAGT
GGCACTGGCCATCAGCAGACCCAGTACAATGATCTCCTCGTGCGCCACAA
TGCGTCGCTAAAGCGACAGAGAATCATCCAACACACGGCCAATAGGGCCA
GCACAAGGGCCAAGGATCAAGCATCCACTGATGATTGTGTGGCCACCAGT
CCAGGAAACATTCAGGCCAAATCCGAACAGGATCCGGATGACGGCTACTT
CGATTCCACGACACGACGCACGCGTAGTGGCACTTGGCCGCGCACTAGAA
GTCTGAATGCTCCGTCGCCATTCCAGCATTTCGGGCCATGTGGTCGCATT
ATGAAGAACTCCGCCATGGTGATGCAGATTCAGGATCCGGCCAGTCAGCG
TTTGACCTGGTACAAGCCACCTCTCACCGTACTCGTGATCAAAAAGAAGG
ACTCACAGGTCCTGCCGCCCTTCGTTCAGCTGGTGGAGTGGCTGGTGCAG
GAGAAGCACATGGTCGTCTGGGTGGAGTCAGCCGTCTTAGAGGACAAGCT
GCTACGGGATGATGTTAAGCTGGAGCAGGAGAGCTCCAAGTTCCAAAAAG
TGCATCAACAGTACGCCGGAGTAAGAGCGCGTTTCCTGGATCTCCGTGAA
AAGCTAGTGACCTTTAAAGATGGCCGCGATGACCTGACCGATCGGATTGA
CTTTATCGTCTGCCTGGGAGGCGATGGCACTCTGCTGTACGCCTCACAGC
TGTTCCAGCAATCTGTCCCACCGGTGATGGCCTTCTATCTGGGCTCCCTT
GGGTTTCTTACGCCCTTCCAGTGCGACAACTTCCAGGAACAGGTGACCAA
TGTCCTGGAGGGTCATGCTGCCCTAACGCTACGTAGTCGCCTGCGCTGCT
CCATCCACCGCAAGGGCGAACGCCGCAAGGAATCGCTTCTGCACTCGGTG
GGTGGTAATCTCCTGATACCGAGTTTCCAAAGGCAGCTCAACTACGTGGA
GCTTAACAACGGACAAACAGGAAAAGCTGGCAGCAATAATAACAATGGCC
ACAACAATAGCATCCTGGTGCTTAACGAGGTGGTCATCAACCGAGGACCC
TCGCCGTACCTGAGCAACATTGATATCTTCTTGGAGGGCAAATACATTAC
GTCGGTGCAGGGCGATGGCCTGATCGTATCGACGCCCACGGGAAGTACAG
CATATGCGGCAGCAGCCGGTGCCTCCATGATCCATCCCTCCGTGCCGGCC
ATTTTGGTGACGCCCATTTGCCCGCACTCGCTGAGCTTCAGGCCCATTGT
GGTGCCCGCCGGAGTGGAGCTAAAGATATCAATTTCACCTGATAGCCGCA
ACACCTCACGCGTTTCCTTCGACGGACGCAACGACCAGGAGCTGAACCAT
GGGGACAGCCTGCGAGTGACCACCTCAATCTATCCCGTGCCCAGCATTTG
CTCCCAGGACCAAATCTCCGATTGGTTTGACTCCCTGGCCGAGGGTCTGC
ACTGGAATGTCCGCAAGCGGCAGAAGTGCCTTGATGAGCTGTCGGACTTG
ACCACTTCGGGGTCGGAGGACACGCTCGATGACTTTGACAATCTTCAGAT
CTACGATGCGGCAAGCTTTCTAGACCAT
BO16569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 1647 | CG6145-PC | 1..1644 | 17..1660 | 8220 | 100 | Plus |
| CG6145-RF | 1455 | CG6145-PF | 132..1452 | 340..1660 | 6605 | 100 | Plus |
| CG6145-RE | 1452 | CG6145-PE | 129..1449 | 340..1660 | 6605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-RC | 2260 | CG6145-RC | 221..1866 | 15..1660 | 8230 | 100 | Plus |
| CG6145-RB | 1826 | CG6145-RB | 111..1432 | 339..1660 | 6610 | 100 | Plus |
| CG6145-RF | 1989 | CG6145-RF | 275..1595 | 340..1660 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13538198..13538855 | 1375..718 | 3290 | 100 | Minus |
| 2R | 25286936 | 2R | 13538972..13539349 | 717..340 | 1890 | 100 | Minus |
| 2R | 25286936 | 2R | 13542160..13542485 | 340..15 | 1630 | 100 | Minus |
| 2R | 25286936 | 2R | 13537765..13538051 | 1660..1374 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 13548954..13549224 | 1375..1105 | 770 | 85.6 | Minus |
| 2R | 25286936 | 2R | 13549306..13549536 | 948..718 | 585 | 83.5 | Minus |
| 2R | 25286936 | 2R | 13549668..13549916 | 585..340 | 580 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13548644..13548896 | 1626..1374 | 545 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:09:03 has no hits.
BO16569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:52 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 1..1647 | 17..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:45 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 214..1862 | 15..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:28 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 223..1866 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:52 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 214..1862 | 15..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:43 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6145-RC | 223..1866 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:43 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13537763..13538049 | 1376..1662 | 99 | <- | Minus |
| 2R | 13538198..13538855 | 718..1375 | 100 | <- | Minus |
| 2R | 13538972..13539349 | 340..717 | 100 | <- | Minus |
| 2R | 13542161..13542483 | 17..339 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:28 Download gff for
BO16569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9425268..9425554 | 1376..1662 | 99 | <- | Minus |
| arm_2R | 9425703..9426360 | 718..1375 | 100 | <- | Minus |
| arm_2R | 9426477..9426854 | 340..717 | 100 | <- | Minus |
| arm_2R | 9429666..9429988 | 17..339 | 100 | | Minus |
BO16569.pep Sequence
Translation from 16 to 1678
> BO16569.pep
MTCLSDIDLATLHQHRLEEIFSYKLAWSGTGHQQTQYNDLLVRHNASLKR
QRIIQHTANRASTRAKDQASTDDCVATSPGNIQAKSEQDPDDGYFDSTTR
RTRSGTWPRTRSLNAPSPFQHFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKKDSQVLPPFVQLVEWLVQEKHMVVWVESAVLEDKLLRDDV
KLEQESSKFQKVHQQYAGVRARFLDLREKLVTFKDGRDDLTDRIDFIVCL
GGDGTLLYASQLFQQSVPPVMAFYLGSLGFLTPFQCDNFQEQVTNVLEGH
AALTLRSRLRCSIHRKGERRKESLLHSVGGNLLIPSFQRQLNYVELNNGQ
TGKAGSNNNNGHNNSILVLNEVVINRGPSPYLSNIDIFLEGKYITSVQGD
GLIVSTPTGSTAYAAAAGASMIHPSVPAILVTPICPHSLSFRPIVVPAGV
ELKISISPDSRNTSRVSFDGRNDQELNHGDSLRVTTSIYPVPSICSQDQI
SDWFDSLAEGLHWNVRKRQKCLDELSDLTTSGSEDTLDDFDNLQIYDAAS
FLDH
BO16569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6145-PC | 548 | CG6145-PC | 1..548 | 1..548 | 2860 | 100 | Plus |
| CG6145-PA | 520 | CG6145-PA | 79..520 | 107..548 | 2293 | 99.8 | Plus |
| CG6145-PF | 484 | CG6145-PF | 35..484 | 100..548 | 2292 | 98.9 | Plus |
| CG6145-PE | 483 | CG6145-PE | 8..483 | 64..548 | 2292 | 92.6 | Plus |
| CG6145-PB | 420 | CG6145-PB | 1..420 | 129..548 | 2173 | 100 | Plus |
