Clone BO16572 Report

Search the DGRC for BO16572

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptjdp-RC
Protein status:BO16572.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO16572.3prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO16572.3prime
ATGGTCTAGAAAGCTTGCAAAAACAAGGCCAAGCGTTGACGCAGTGCAGC
GGGACACAAGGACGACTTTAAGGGATCGGGGCTCCCGCCGTGCCGAAGTG
AGGAAGTGAGAGGGCAGACAGAGTGAGGGAGACGGGGCGACTACTTCTCT
GTATTCGCTGAGTTCCTGGCCCATATCGCATACCTCTTTATCCACTTTCT
CGGCAATCGTGTATCTTCTCACCTGACCGACATGCTCCTTCATGCCCAGC
CACTGTTTGTAGCTCATCGAGATGCCGCTGTTGCGCCACTTGTCGTAGAT
GGCCCTCTTTTCGGGATCGCACAAGGTTTCCTTGGCCTCCTTTAACTGCT
GGAACTTGGCCTCCGCCTCCTTGTCGCCGGAGTTCTTGTCGGGATGGTAC
TGAAGGGCCAGGACTTTGTACTCGGCCTGGATCTGCTCGGGCGATGAGTT
CTCATCGCAATGGAGCAGACCGTAGAAGTCCTCGTTGGGACTGCGCTTGT
AATTGATTATAGCATCAACGGCGCTCATGTCGACTGATAACT

BO16572.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PC 513 jdp-RC 1..510 528..19 2550 100 Minus
CG2239-PA 588 jdp-RA 1..345 528..184 1725 100 Minus
CG2239-PB 549 jdp-RB 1..306 528..223 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 663 CG2239-RC 101..610 528..19 2550 100 Minus
jdp-RA 1960 CG2239-RA 101..445 528..184 1725 100 Minus
jdp-RB 1921 CG2239-RB 101..406 528..223 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30519443..30519765 19..341 1615 100 Plus
3R 32079331 3R 30523227..30523330 339..442 520 100 Plus
3R 32079331 3R 30526243..30526329 442..528 435 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:40:34 has no hits.

BO16572.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:56 Download gff for BO16572.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PC 1..513 15..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:56 Download gff for BO16572.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 8..528 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:04 Download gff for BO16572.3prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 8..528 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:04 Download gff for BO16572.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30526243..30526329 442..528 100   Plus
3R 30523228..30523329 340..441 100 <- Plus
3R 30519434..30519763 8..339 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:56 Download gff for BO16572.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26348950..26349051 340..441 100 <- Plus
arm_3R 26351965..26352051 442..528 100   Plus
arm_3R 26345156..26345485 8..339 98 <- Plus

BO16572.5prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO16572.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTGCAAGCTTTCTAGACC

BO16572.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2239-PC 513 jdp-RC 1..510 17..526 2550 100 Plus
CG2239-PA 588 jdp-RA 1..345 17..361 1725 100 Plus
CG2239-PB 549 jdp-RB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 663 CG2239-RC 101..610 17..526 2550 100 Plus
jdp-RA 1960 CG2239-RA 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30519443..30519765 526..204 1615 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:50:17 has no hits.

BO16572.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:57 Download gff for BO16572.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2239-PC 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:33 Download gff for BO16572.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 17..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:17 Download gff for BO16572.5prime
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..619 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:17 Download gff for BO16572.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30519434..30519763 206..537 98 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:33 Download gff for BO16572.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26345156..26345485 206..537 98 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BO16572.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ633866

> BO16572.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTGCAAGCTTTCTAGACCAT

BO16572.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 513 CG2239-PC 1..510 17..526 2550 100 Plus
jdp-RA 588 CG2239-PA 1..345 17..361 1725 100 Plus
jdp-RB 549 CG2239-PB 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-RC 663 CG2239-RC 101..610 17..526 2550 100 Plus
jdp-RA 1960 CG2239-RA 101..445 17..361 1725 100 Plus
jdp-RB 1921 CG2239-RB 101..406 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30519443..30519765 526..204 1615 100 Minus
3R 32079331 3R 30523227..30523330 206..103 520 100 Minus
3R 32079331 3R 30526243..30526329 103..17 435 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:14:22 has no hits.

BO16572.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:11 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:16 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 103..621 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:20 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..610 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:11 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 103..621 17..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:47 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
jdp-RC 101..610 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:47 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30519441..30519763 206..528 99 <- Minus
3R 30523228..30523329 104..205 100 <- Minus
3R 30526243..30526329 17..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:20 Download gff for BO16572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26345163..26345485 206..528 99 <- Minus
arm_3R 26348950..26349051 104..205 100 <- Minus
arm_3R 26351965..26352051 17..103 100   Minus

BO16572.pep Sequence

Translation from 16 to 544

> BO16572.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKEVCDMGQELSEYREVVAPSPSLCLPSHFLTSARREP
RSLKVVLVSRCTASTLGLVFASFLDH

BO16572.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
jdp-PC 170 CG2239-PC 1..170 1..170 890 100 Plus
jdp-PA 195 CG2239-PA 1..115 1..115 611 100 Plus
jdp-PB 182 CG2239-PB 1..120 1..120 553 86.7 Plus
DnaJ-1-PA 334 CG10578-PA 3..72 16..86 152 40.8 Plus
DnaJ-1-PB 334 CG10578-PB 3..72 16..86 152 40.8 Plus