Clone Sequence Records
BO16572.3prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO16572.3prime
ATGGTCTAGAAAGCTTGCAAAAACAAGGCCAAGCGTTGACGCAGTGCAGC
GGGACACAAGGACGACTTTAAGGGATCGGGGCTCCCGCCGTGCCGAAGTG
AGGAAGTGAGAGGGCAGACAGAGTGAGGGAGACGGGGCGACTACTTCTCT
GTATTCGCTGAGTTCCTGGCCCATATCGCATACCTCTTTATCCACTTTCT
CGGCAATCGTGTATCTTCTCACCTGACCGACATGCTCCTTCATGCCCAGC
CACTGTTTGTAGCTCATCGAGATGCCGCTGTTGCGCCACTTGTCGTAGAT
GGCCCTCTTTTCGGGATCGCACAAGGTTTCCTTGGCCTCCTTTAACTGCT
GGAACTTGGCCTCCGCCTCCTTGTCGCCGGAGTTCTTGTCGGGATGGTAC
TGAAGGGCCAGGACTTTGTACTCGGCCTGGATCTGCTCGGGCGATGAGTT
CTCATCGCAATGGAGCAGACCGTAGAAGTCCTCGTTGGGACTGCGCTTGT
AATTGATTATAGCATCAACGGCGCTCATGTCGACTGATAACT
BO16572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PC | 513 | jdp-RC | 1..510 | 528..19 | 2550 | 100 | Minus |
CG2239-PA | 588 | jdp-RA | 1..345 | 528..184 | 1725 | 100 | Minus |
CG2239-PB | 549 | jdp-RB | 1..306 | 528..223 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 663 | CG2239-RC | 101..610 | 528..19 | 2550 | 100 | Minus |
jdp-RA | 1960 | CG2239-RA | 101..445 | 528..184 | 1725 | 100 | Minus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 528..223 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30519443..30519765 | 19..341 | 1615 | 100 | Plus |
3R | 32079331 | 3R | 30523227..30523330 | 339..442 | 520 | 100 | Plus |
3R | 32079331 | 3R | 30526243..30526329 | 442..528 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:40:34 has no hits.
BO16572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:56 Download gff for
BO16572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PC | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:56 Download gff for
BO16572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 8..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:04 Download gff for
BO16572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 8..528 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:04 Download gff for
BO16572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30526243..30526329 | 442..528 | 100 | | Plus |
3R | 30523228..30523329 | 340..441 | 100 | <- | Plus |
3R | 30519434..30519763 | 8..339 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:56 Download gff for
BO16572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26348950..26349051 | 340..441 | 100 | <- | Plus |
arm_3R | 26351965..26352051 | 442..528 | 100 | | Plus |
arm_3R | 26345156..26345485 | 8..339 | 98 | <- | Plus |
BO16572.5prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO16572.5prime
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTGCAAGCTTTCTAGACC
BO16572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2239-PC | 513 | jdp-RC | 1..510 | 17..526 | 2550 | 100 | Plus |
CG2239-PA | 588 | jdp-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
CG2239-PB | 549 | jdp-RB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 663 | CG2239-RC | 101..610 | 17..526 | 2550 | 100 | Plus |
jdp-RA | 1960 | CG2239-RA | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30519443..30519765 | 526..204 | 1615 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:50:17 has no hits.
BO16572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:57 Download gff for
BO16572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2239-PC | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:33 Download gff for
BO16572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:17 Download gff for
BO16572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..619 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:17 Download gff for
BO16572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30519434..30519763 | 206..537 | 98 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:33 Download gff for
BO16572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26345156..26345485 | 206..537 | 98 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BO16572.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ633866
> BO16572.complete
GAAGTTATCAGTCGACATGAGCGCCGTTGATGCTATAATCAATTACAAGC
GCAGTCCCAACGAGGACTTCTACGGTCTGCTCCATTGCGATGAGAACTCA
TCGCCCGAGCAGATCCAGGCCGAGTACAAAGTCCTGGCCCTTCAGTACCA
TCCCGACAAGAACTCCGGCGACAAGGAGGCGGAGGCCAAGTTCCAGCAGT
TAAAGGAGGCCAAGGAAACCTTGTGCGATCCCGAAAAGAGGGCCATCTAC
GACAAGTGGCGCAACAGCGGCATCTCGATGAGCTACAAACAGTGGCTGGG
CATGAAGGAGCATGTCGGTCAGGTGAGAAGATACACGATTGCCGAGAAAG
TGGATAAAGAGGTATGCGATATGGGCCAGGAACTCAGCGAATACAGAGAA
GTAGTCGCCCCGTCTCCCTCACTCTGTCTGCCCTCTCACTTCCTCACTTC
GGCACGGCGGGAGCCCCGATCCCTTAAAGTCGTCCTTGTGTCCCGCTGCA
CTGCGTCAACGCTTGGCCTTGTTTTTGCAAGCTTTCTAGACCAT
BO16572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 513 | CG2239-PC | 1..510 | 17..526 | 2550 | 100 | Plus |
jdp-RA | 588 | CG2239-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 549 | CG2239-PB | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-RC | 663 | CG2239-RC | 101..610 | 17..526 | 2550 | 100 | Plus |
jdp-RA | 1960 | CG2239-RA | 101..445 | 17..361 | 1725 | 100 | Plus |
jdp-RB | 1921 | CG2239-RB | 101..406 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30519443..30519765 | 526..204 | 1615 | 100 | Minus |
3R | 32079331 | 3R | 30523227..30523330 | 206..103 | 520 | 100 | Minus |
3R | 32079331 | 3R | 30526243..30526329 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:14:22 has no hits.
BO16572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:11 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:16 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 103..621 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:20 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..610 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:11 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 103..621 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:47 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
jdp-RC | 101..610 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:47 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30519441..30519763 | 206..528 | 99 | <- | Minus |
3R | 30523228..30523329 | 104..205 | 100 | <- | Minus |
3R | 30526243..30526329 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:20 Download gff for
BO16572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26345163..26345485 | 206..528 | 99 | <- | Minus |
arm_3R | 26348950..26349051 | 104..205 | 100 | <- | Minus |
arm_3R | 26351965..26352051 | 17..103 | 100 | | Minus |
BO16572.pep Sequence
Translation from 16 to 544
> BO16572.pep
MSAVDAIINYKRSPNEDFYGLLHCDENSSPEQIQAEYKVLALQYHPDKNS
GDKEAEAKFQQLKEAKETLCDPEKRAIYDKWRNSGISMSYKQWLGMKEHV
GQVRRYTIAEKVDKEVCDMGQELSEYREVVAPSPSLCLPSHFLTSARREP
RSLKVVLVSRCTASTLGLVFASFLDH
BO16572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jdp-PC | 170 | CG2239-PC | 1..170 | 1..170 | 890 | 100 | Plus |
jdp-PA | 195 | CG2239-PA | 1..115 | 1..115 | 611 | 100 | Plus |
jdp-PB | 182 | CG2239-PB | 1..120 | 1..120 | 553 | 86.7 | Plus |
DnaJ-1-PA | 334 | CG10578-PA | 3..72 | 16..86 | 152 | 40.8 | Plus |
DnaJ-1-PB | 334 | CG10578-PB | 3..72 | 16..86 | 152 | 40.8 | Plus |