Clone Sequence Records
BO16573.3prime Sequence
598 bp (507 high quality bases) assembled on 2006-10-13
> BO16573.3prime
ATGGTCTAGAAAGCTTGCGATAGCCACACTCTGCTTGGCCTCGTTCTCCC
GCTGCTGCTTGTTGACCGCCGATATGCACTTGGCCATGGTGGGCGAGGCG
CGCGAAATGGCGTCGGTCATGAAGTAGTCGCGCAGCTCCTTTAGCTTAAT
ATCGATGGCGCCACCGCCGATGGATTTGCTAATAGTGCCCGCTGCTCCGG
CATCGCCGGCTGGCTCCAATTGGCCCAGGCGCGTTAGATGTGGCGCCACA
TCCTCCAGACGGTTGCGCAGCTCGTCCAGGTTGTCGTACGGCAGCGGCTT
GCCCACCACCTCGGACAGAGCGCGCAGGATCTTCCAGTCCTCGCGAGCCA
TACCCGGTGGCGAAACACCAGGCAGCGTCTGCTGCGGCCTGCCCTCCGTG
TTCACGTAGATGCCCTGCTTCTCTGTGTAGGCGGCACCAGGCAGAACGGC
ATCGGCAATGGAGGCGCCGTTGTCACCATGCGATCCAATGTACACCACGA
AGCAGTCCTTGGGCAGCTGCTCGCGAGTCACCTTGCCAGCGTCGGCGTTC
AACAGGAACAGCACCTTGGGCTGAGCCTTCACAGCGGTCTGTGCACCG
BO16573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2286-PA | 2196 | ND75-RA | 1614..2193 | 598..19 | 2900 | 100 | Minus |
| CG2286-PB | 2196 | ND75-RB | 1614..2193 | 598..19 | 2900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 1682..2261 | 598..19 | 2900 | 100 | Minus |
| ND75-RA | 2571 | CG2286-RA | 1710..2289 | 598..19 | 2900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 07:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8249154..8249571 | 181..598 | 2090 | 100 | Plus |
| X | 23542271 | X | 8248933..8249094 | 19..180 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 07:24:29 has no hits.
BO16573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:58 Download gff for
BO16573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2286-PB | 1614..2196 | 18..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 22:24:11 Download gff for
BO16573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 1710..2294 | 13..598 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 07:52:06 Download gff for
BO16573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 1710..2294 | 13..598 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 07:52:06 Download gff for
BO16573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8248928..8249094 | 13..180 | 98 | <- | Plus |
| X | 8249154..8249571 | 181..598 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 22:24:11 Download gff for
BO16573.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8142961..8143127 | 13..180 | 98 | <- | Plus |
| arm_X | 8143187..8143604 | 181..598 | 100 | | Plus |
BO16573.5prime Sequence
593 bp (537 high quality bases) assembled on 2006-10-13
> BO16573.5prime
GAAGTTATCAGTCGACATGATACGGGCACCGCTAGTCAAGGCGCTGGGCG
CTCTGGGCTCGCCCACACATCAGATGGCCAGCCGGGCGGTGCGAACCAGC
GCCATGGTGGCCCAGACACCGGCGAAAGCGCCCGAGAAGATCGAGGTCTT
TGTGGATGACATTCCCGTGCAGGTGGTACCCGGCACCACTGTCCTCCAGG
CTGCTGCTCAGATCGGCGTGGAGATACCCAGATTCTGCTACCACGAACGT
CTTGCGGTGGCCGGCAACTGCAGGATGTGCCTCGTCGAGGTGGAGAAGAG
TCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGTGATGAAGGGCTGGCGCA
TCAAGACCAACTCGGATTTGACCCGCAAGGCGCGCGAGGGCGTCATGGAG
TTCCTGCTGATGAACCATCCGCTGGATTGCCCCATCTGCGATCAGGGCGG
CGAGTGCGATCTGCAGGATCAGGCCATGGCCTTCGGTTCCGATCGATCCC
GCTTCACGGACATTAACTACACGGGCAAGCGCGCTGTCGAGGGACAAGAC
ATCGGACCGCTAGTCAAGACCATCATGACACGCTGCATCCACT
BO16573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2286-PA | 2196 | ND75-RA | 1..577 | 17..593 | 2810 | 99.6 | Plus |
| CG2286-PB | 2196 | ND75-RB | 1..577 | 17..593 | 2810 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 69..645 | 17..593 | 2840 | 99.7 | Plus |
| ND75-RA | 2571 | CG2286-RA | 97..673 | 17..593 | 2840 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8250798..8251131 | 531..198 | 1670 | 100 | Minus |
| X | 23542271 | X | 8251200..8251383 | 200..17 | 920 | 100 | Minus |
| X | 23542271 | X | 8250668..8250730 | 593..531 | 255 | 93.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:58:20 has no hits.
BO16573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:59 Download gff for
BO16573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2286-PB | 1..577 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 17:59:37 Download gff for
BO16573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..673 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:02 Download gff for
BO16573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..673 | 17..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:02 Download gff for
BO16573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8250668..8250729 | 532..593 | 96 | <- | Minus |
| X | 8250798..8251129 | 200..531 | 100 | <- | Minus |
| X | 8251201..8251391 | 9..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 17:59:37 Download gff for
BO16573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8144701..8144762 | 532..593 | 96 | <- | Minus |
| arm_X | 8144831..8145162 | 200..531 | 100 | <- | Minus |
| arm_X | 8145234..8145424 | 9..199 | 97 | | Minus |
BO16573.complete Sequence
2227 bp assembled on 2007-03-23
GenBank Submission: FJ633867
> BO16573.complete
GAAGTTATCAGTCGACATGATACGGGCACCGCTAGTCAAGGCGCTGGGCG
CTCTGGGCTCGCCCACACATCAGATGGCCAGCCGGGCGGTGCGAACCAGC
GCCATGGTGGCCCAGACACCGGCGAAAGCGCCCGAGAAGATCGAGGTCTT
TGTGGATGACATTCCCGTGCAGGTGGTACCCGGCACCACTGTCCTCCAGG
CTGCTGCTCAGATCGGCGTGGAGATACCCAGATTCTGCTACCACGAACGT
CTTGCGGTGGCCGGCAACTGCAGGATGTGCCTCGTCGAGGTGGAGAAGAG
TCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGTGATGAAGGGCTGGCGCA
TCAAGACCAACTCGGATTTGACCCGCAAGGCGCGCGAGGGCGTCATGGAG
TTCCTGCTGATGAACCATCCGCTGGATTGCCCCATCTGCGATCAGGGCGG
CGAGTGCGATCTGCAGGATCAGGCCATGGCCTTCGGTTCCGATCGATCCC
GCTTCACGGACATTAACTACACGGGCAAGCGCGCTGTCGAGGACAAGGAC
ATCGGACCGCTAGTCAAGACCATCATGACACGCTGCATCCACTGCACCCG
CTGTGTGCGTTTCGCCTCCGAGATTGCCGGCGTTGATGACCTGGGCACCA
CTGGCCGTGGCAACGACATGCAGATCGGCACCTACGTGGAGAAGCTCTTC
CTTACCGAACTGTCCGGCAACGTGATCGACCTGTGCCCCGTGGGAGCGCT
GACCAACAAGCCCTACAGTTTTGTGGCCCGTCCCTGGGAGATCCGTAAGG
TGAGCAGCATCGATGTGCTGGACGCCGTCGGCAGCAACATTGTCGTCAGC
ACCCGCACCAATGAGGTGCTGCGCATCCTGCCCCGTGAGAACGAGGACGT
CAACGAGGAATGGCTTGCTGACAAATCGCGCTTCGCCTGCGACGGTCTGA
AGCGCCAGCGCCTGGTGGCTCCCATGGTGCGCATGCCCAACGGCGAACTA
CAGGCCGTAGAGTGGGAGGGTGCCCTCATCGCCGTGGCCAAGGCCATTAA
GGCAGCCGGTGGACAGATTGCCGGTATTTCTGGCCAACTTGCCGACCTGG
AGGCTCAGGTGGCCCTGAAGGATCTGCTGAACCGTCTGGGCAGCGAAGTG
GTCGCCACTGAACAAGGATTTATTGCCGGAGGCACCGACAACCGTGCTAA
TTACCTCTTGAACAGCACCATTGCCGGTTTGGAGGAGGCCGACGCCGTTC
TCCTGGTGGGCACCAATCCCCGTTACGAGGCTCCATTGGTCAACACCCGT
TTGCGCAAGGCCTATGTGCACAACGAACTGCAGATTGCCTCGATTGGACC
CAAGATCGATCTGTCCTACGACCACGAGAACCTTGGCGCCGATGCCGCTT
TAGTCAAGGACGTGTGCTCCGGAGCTCATGCCTTCTCCAAGGTCTTGGAG
GGTGCCAAGAAGCCGGCCATCATTATTGGAGCCGATTTGTTGGAGCGTGC
CGATGGTGCCGCCATTCACGCCACCGTTGCCGAGTACTGCAAGAAGCTGA
AGAAGCCGAACTGGAACCCCTTCAATGTGCTGCAGACCAACGCCGCCCAG
GTGGGCGCCCTCGATGTGGGCTACAAGGCCGGTGCACAGACCGCTGTGAA
GGCTCAGCCCAAGGTGCTGTTCCTGTTGAACGCCGACGCTGGCAAGGTGA
CTCGCGAGCAGCTGCCCAAGGACTGCTTCGTGGTGTACATTGGATCGCAT
GGTGACAACGGCGCCTCCATTGCCGATGCCGTTCTGCCTGGTGCCGCCTA
CACAGAGAAGCAGGGCATCTACGTGAACACGGAGGGCAGGCCGCAGCAGA
CGCTGCCTGGTGTTTCGCCACCGGGTATGGCTCGCGAGGACTGGAAGATC
CTGCGCGCTCTGTCCGAGGTGGTGGGCAAGCCGCTGCCGTACGACAACCT
GGACGAGCTGCGCAACCGTCTGGAGGATGTGGCGCCACATCTAACGCGCC
TGGGCCAATTGGAGCCAGCCGGCGATGCCGGAGCAGCGGGCACTATTAGC
AAATCCATCGGCGGTGGCGCCATCGATATTAAGCTAAAGGAGCTGCGCGA
CTACTTCATGACCGACGCCATTTCGCGCGCCTCGCCCACCATGGCCAAGT
GCATATCGGCGGTCAACAAGCAGCAGCGGGAGAACGAGGCCAAGCAGAGT
GTGGCTATCGCAAGCTTTCTAGACCAT
BO16573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2196 | CG2286-PB | 1..2193 | 17..2209 | 10965 | 100 | Plus |
| ND75-RA | 2196 | CG2286-PA | 1..2193 | 17..2209 | 10965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 69..2261 | 17..2209 | 10965 | 100 | Plus |
| ND75-RA | 2571 | CG2286-RA | 97..2289 | 17..2209 | 10965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8249703..8250730 | 1558..531 | 5140 | 100 | Minus |
| X | 23542271 | X | 8249154..8249643 | 2047..1558 | 2450 | 100 | Minus |
| X | 23542271 | X | 8250798..8251131 | 531..198 | 1670 | 100 | Minus |
| X | 23542271 | X | 8251200..8251383 | 200..17 | 920 | 100 | Minus |
| X | 23542271 | X | 8248933..8249094 | 2209..2048 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:25 has no hits.
BO16573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:53 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RB | 1..2196 | 17..2210 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:23 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RB | 259..2464 | 9..2215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:10 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..2289 | 17..2211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:53 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RB | 259..2464 | 9..2215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:01 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..2289 | 17..2211 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:01 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8248931..8249094 | 2048..2211 | 98 | <- | Minus |
| X | 8249154..8249642 | 1559..2047 | 100 | <- | Minus |
| X | 8249703..8250729 | 532..1558 | 100 | <- | Minus |
| X | 8250798..8251129 | 200..531 | 100 | <- | Minus |
| X | 8251201..8251383 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:10 Download gff for
BO16573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8142964..8143127 | 2048..2211 | 98 | <- | Minus |
| arm_X | 8143187..8143675 | 1559..2047 | 100 | <- | Minus |
| arm_X | 8143736..8144762 | 532..1558 | 100 | <- | Minus |
| arm_X | 8144831..8145162 | 200..531 | 100 | <- | Minus |
| arm_X | 8145234..8145416 | 17..199 | 100 | | Minus |
BO16573.pep Sequence
Translation from 16 to 2227
> BO16573.pep
MIRAPLVKALGALGSPTHQMASRAVRTSAMVAQTPAKAPEKIEVFVDDIP
VQVVPGTTVLQAAAQIGVEIPRFCYHERLAVAGNCRMCLVEVEKSPKPVA
ACAMPVMKGWRIKTNSDLTRKAREGVMEFLLMNHPLDCPICDQGGECDLQ
DQAMAFGSDRSRFTDINYTGKRAVEDKDIGPLVKTIMTRCIHCTRCVRFA
SEIAGVDDLGTTGRGNDMQIGTYVEKLFLTELSGNVIDLCPVGALTNKPY
SFVARPWEIRKVSSIDVLDAVGSNIVVSTRTNEVLRILPRENEDVNEEWL
ADKSRFACDGLKRQRLVAPMVRMPNGELQAVEWEGALIAVAKAIKAAGGQ
IAGISGQLADLEAQVALKDLLNRLGSEVVATEQGFIAGGTDNRANYLLNS
TIAGLEEADAVLLVGTNPRYEAPLVNTRLRKAYVHNELQIASIGPKIDLS
YDHENLGADAALVKDVCSGAHAFSKVLEGAKKPAIIIGADLLERADGAAI
HATVAEYCKKLKKPNWNPFNVLQTNAAQVGALDVGYKAGAQTAVKAQPKV
LFLLNADAGKVTREQLPKDCFVVYIGSHGDNGASIADAVLPGAAYTEKQG
IYVNTEGRPQQTLPGVSPPGMAREDWKILRALSEVVGKPLPYDNLDELRN
RLEDVAPHLTRLGQLEPAGDAGAAGTISKSIGGGAIDIKLKELRDYFMTD
AISRASPTMAKCISAVNKQQRENEAKQSVAIASFLDH
BO16573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-PB | 731 | CG2286-PB | 1..731 | 1..731 | 3745 | 100 | Plus |
| ND75-PA | 731 | CG2286-PA | 1..731 | 1..731 | 3745 | 100 | Plus |
