Clone Sequence Records
BO16576.3prime Sequence
630 bp (569 high quality bases) assembled on 2006-10-13
> BO16576.3prime
ATGGTCTAGAAAGCTTGCCGCCTTGGCCCCCGGTATCTTGGACAGAACCT
TGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGCC
ACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGAC
AATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTGG
GCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTTG
TACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCAA
CTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCCT
CGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGTC
TGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGAG
CTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTGC
GTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCGG
ATCTTGGCTGCCTGCAGCTCGTANGCCAACTGCGATTCGGCCTTGGCCGT
GTTGATCTCCTGATCGAAATTGGCCTTCTG
BO16576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32593-PD | 846 | Flo-2-RD | 232..843 | 630..19 | 3041 | 99.8 | Minus |
CG32593-PA | 1317 | Flo-2-RA | 703..1314 | 630..19 | 3041 | 99.8 | Minus |
CG32593-PB | 1278 | Flo-2-RB | 664..1275 | 630..19 | 3041 | 99.8 | Minus |
CG32593-PE | 1317 | Flo-2-RE | 703..1314 | 630..19 | 3041 | 99.8 | Minus |
CG32593-PF | 1278 | Flo-2-RF | 664..1275 | 630..19 | 3041 | 99.8 | Minus |
CG32593-PC | 1206 | Flo-2-RC | 592..1203 | 630..19 | 3041 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RM | 2602 | CG32593-RM | 1202..1813 | 630..19 | 3049 | 99.8 | Minus |
Flo2-RA | 2819 | CG32593-RA | 849..1460 | 630..19 | 3049 | 99.8 | Minus |
Flo2-RH | 2429 | CG32593-RH | 459..1070 | 630..19 | 3049 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14931064..14931314 | 630..380 | 1244 | 99.6 | Minus |
X | 23542271 | X | 14931802..14931985 | 379..196 | 920 | 100 | Minus |
X | 23542271 | X | 14932046..14932224 | 197..19 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 16:55:40 has no hits.
BO16576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:59 Download gff for
BO16576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32593-PC | 592..1206 | 16..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:33:56 Download gff for
BO16576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RG | 792..1411 | 12..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:17 Download gff for
BO16576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RH | 459..1078 | 12..630 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:17 Download gff for
BO16576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14931064..14931314 | 380..630 | 99 | -> | Minus |
X | 14931802..14931985 | 196..379 | 100 | -> | Minus |
X | 14932048..14932232 | 12..195 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:33:56 Download gff for
BO16576.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14825097..14825347 | 380..630 | 99 | -> | Minus |
arm_X | 14825835..14826018 | 196..379 | 100 | -> | Minus |
arm_X | 14826081..14826265 | 12..195 | 98 | | Minus |
BO16576.5prime Sequence
588 bp (526 high quality bases) assembled on 2006-10-13
> BO16576.5prime
GAAGTTATCAGTCGACATGGGCAACATACACACGACGGGTCCCAATGAGG
CGTTAATTGTTTCAGGTGGCTGCTGTGGATCGACCAAGAAGCGCACGATT
GTGGGCGGCTGGGCGTGGGCGTGGTGGCTGGTAACCGATGTCCAGCGACT
GTCCCTCAATGTGATGACCCTGAATCCGATGTGCGAGAATGTGGAAACGT
CGCAAGGTGTTCCGCTAACGGTGACCGGAGTGGCTCAATGCAAGATCATG
AAGGCCGACGAGCTTCTAGGCACTGCCAGCGAGCAATTCCTTGGAAAGAG
CGTCAAGGAGATCAAGCAGACGATCCTGCAAACCCTCGAAGGACATTTGA
GAGCCATATTGGGAACGCTTACAGTAGAAGAGGTGTACAAGGACCGCGAC
CAATTCGCTGCCTTGGTGCGCGAGGTGGCCGCACCGGACGTGGGTCGTAT
GGGCATCGAGATTCTCTCGTTTACGATCAAGGACGTCTACGATGATGTGC
AGTACCTGGCCTCGTTGGGCAAGGCCCAGACCGCCGTGGTCAAGCGGGAT
GCAGATGCCGGCGTGGCGGAGGCCAATCGAGATGCCGG
BO16576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32593-PB | 1278 | Flo-2-RB | 1..572 | 17..588 | 2860 | 100 | Plus |
CG32593-PF | 1278 | Flo-2-RF | 1..572 | 17..588 | 2860 | 100 | Plus |
CG32593-PA | 1317 | Flo-2-RA | 275..611 | 252..588 | 1685 | 100 | Plus |
CG32593-PE | 1317 | Flo-2-RE | 275..611 | 252..588 | 1685 | 100 | Plus |
CG32593-PC | 1206 | Flo-2-RC | 164..500 | 252..588 | 1685 | 100 | Plus |
CG32593-PA | 1317 | Flo-2-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
CG32593-PE | 1317 | Flo-2-RE | 1..237 | 17..253 | 1185 | 100 | Plus |
CG32593-PD | 846 | Flo-2-RD | 1..140 | 449..588 | 700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RB | 2780 | CG32593-RB | 147..718 | 17..588 | 2860 | 100 | Plus |
Flo2-RF | 2892 | CG32593-RF | 259..830 | 17..588 | 2860 | 100 | Plus |
Flo2-RL | 2780 | CG32593-RL | 147..718 | 17..588 | 2860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930746..14930972 | 362..588 | 1135 | 100 | Plus |
X | 23542271 | X | 14924220..14924414 | 60..254 | 975 | 100 | Plus |
X | 23542271 | X | 14926764..14926875 | 252..363 | 560 | 100 | Plus |
X | 23542271 | X | 14840971..14841022 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:39:13 has no hits.
BO16576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:00 Download gff for
BO16576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32593-PF | 1..572 | 17..588 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:06:02 Download gff for
BO16576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RL | 141..718 | 12..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:14 Download gff for
BO16576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RL | 141..718 | 12..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:14 Download gff for
BO16576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14840965..14841019 | 12..65 | 96 | -> | Plus |
X | 14924226..14924413 | 66..253 | 100 | -> | Plus |
X | 14926766..14926874 | 254..362 | 100 | -> | Plus |
X | 14930747..14930972 | 363..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:06:02 Download gff for
BO16576.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14734998..14735052 | 12..65 | 96 | -> | Plus |
arm_X | 14818259..14818446 | 66..253 | 100 | -> | Plus |
arm_X | 14820799..14820907 | 254..362 | 100 | -> | Plus |
arm_X | 14824780..14825005 | 363..588 | 100 | | Plus |
BO16576.complete Sequence
1309 bp assembled on 2007-03-23
GenBank Submission: FJ633868
> BO16576.complete
GAAGTTATCAGTCGACATGGGCAACATACACACGACGGGTCCCAATGAGG
CGTTAATTGTTTCAGGTGGCTGCTGTGGATCGACCAAGAAGCGCACGATT
GTGGGCGGCTGGGCGTGGGCGTGGTGGCTGGTAACCGATGTCCAGCGACT
GTCCCTCAATGTGATGACCCTGAATCCGATGTGCGAGAATGTGGAAACGT
CGCAAGGTGTTCCGCTAACGGTGACCGGAGTGGCTCAATGCAAGATCATG
AAGGCCGACGAGCTTCTAGGCACTGCCAGCGAGCAATTCCTTGGAAAGAG
CGTCAAGGAGATCAAGCAGACGATCCTGCAAACCCTCGAAGGACATTTGA
GAGCCATATTGGGAACGCTTACAGTAGAAGAGGTGTACAAGGACCGCGAC
CAATTCGCTGCCTTGGTGCGCGAGGTGGCCGCACCGGACGTGGGTCGTAT
GGGCATCGAGATTCTCTCGTTTACGATCAAGGACGTCTACGATGATGTGC
AGTACCTGGCCTCGTTGGGCAAGGCCCAGACCGCCGTGGTCAAGCGGGAT
GCAGATGCCGGCGTGGCGGAGGCCAATCGAGATGCCGGTATCCGTGAGGC
GGAGTGCGAAAAGAGCGCCATGGATGTGAAATACTCGACGGACACGAAAA
TCGAGGACAACACCAGGATGTACAAGCTGCAGAAGGCCAATTTCGATCAG
GAGATCAACACGGCCAAGGCCGAATCGCAGTTGGCCTACGAGCTGCAGGC
AGCCAAGATCCGCCAGCGCATCCGTAACGAGGAGATTCAGATCGAGGTGG
TGGAGCGACGCAAGCAGATCGAGATTGAGTCGCAGGAAGTGCAGCGCAAG
GATCGCGAGCTCACTGGCACAGTCAAGCTGCCCGCCGAGGCCGAGGCCTT
CCGCCTCCAGACCCTTGCGCAGGCCAAGCAATGTCAGACCATCGAGGGTG
CCCGTGCCGAGGCGGAGCGCATACGCAAGATCGGATCGGCGGAGGCCCAT
GCCATCGAGTTGGTGGGCAAGGCGGAGGCGGAACGCATGCGGATGAAGGC
CCATGTGTACAAGCAGTACGGCGATGCAGCAATTATGAATATTGTACTCG
AATCGCTGCCCAAGATTGCCGCTGAGGTGGCTGCACCACTGGCCAAAACC
GATGAGATTGTCCTAATTGGCGGCAACGATAATATAACCAACGATGTGAC
TCGCTTGGTGGCCCAGCTACCGCCATCGATCAACGCCTTGACCGGAGTGG
ATTTGTCCAAGGTTCTGTCCAAGATACCGGGGGCCAAGGCGGCAAGCTTT
CTAGACCAT
BO16576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RB | 1278 | CG32593-PB | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Flo2-RF | 1278 | CG32593-PF | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Flo2-RL | 1323 | CG32593-PL | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-RB | 2780 | CG32593-RB | 147..1421 | 17..1291 | 6375 | 100 | Plus |
Flo2-RF | 2892 | CG32593-RF | 259..1533 | 17..1291 | 6375 | 100 | Plus |
Flo2-RL | 2780 | CG32593-RL | 147..1421 | 17..1291 | 6375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14930746..14931314 | 362..930 | 2845 | 100 | Plus |
X | 23542271 | X | 14924220..14924414 | 60..254 | 975 | 100 | Plus |
X | 23542271 | X | 14931802..14931985 | 931..1114 | 920 | 100 | Plus |
X | 23542271 | X | 14932046..14932224 | 1113..1291 | 895 | 100 | Plus |
X | 23542271 | X | 14926764..14926875 | 252..363 | 560 | 100 | Plus |
X | 23542271 | X | 14840971..14841022 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:10:14 has no hits.
BO16576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:50 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RB | 1..1278 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:37 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RB | 145..1419 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:18 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RL | 147..1421 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:50 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo-2-RB | 139..1427 | 12..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:28 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Flo2-RL | 147..1421 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:28 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14840971..14841019 | 17..65 | 100 | -> | Plus |
X | 14924226..14924413 | 66..253 | 100 | -> | Plus |
X | 14926766..14926874 | 254..362 | 100 | -> | Plus |
X | 14930747..14931314 | 363..930 | 100 | -> | Plus |
X | 14931802..14931985 | 931..1114 | 100 | -> | Plus |
X | 14932048..14932224 | 1115..1293 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:18 Download gff for
BO16576.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14735004..14735052 | 17..65 | 100 | -> | Plus |
arm_X | 14818259..14818446 | 66..253 | 100 | -> | Plus |
arm_X | 14820799..14820907 | 254..362 | 100 | -> | Plus |
arm_X | 14824780..14825347 | 363..930 | 100 | -> | Plus |
arm_X | 14825835..14826018 | 931..1114 | 100 | -> | Plus |
arm_X | 14826081..14826257 | 1115..1293 | 98 | | Plus |
BO16576.pep Sequence
Translation from 16 to 1309
> BO16576.pep
MGNIHTTGPNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVM
TLNPMCENVETSQGVPLTVTGVAQCKIMKADELLGTASEQFLGKSVKEIK
QTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEIL
SFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAECEKS
AMDVKYSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQ
RIRNEEIQIEVVERRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTL
AQAKQCQTIEGARAEAERIRKIGSAEAHAIELVGKAEAERMRMKAHVYKQ
YGDAAIMNIVLESLPKIAAEVAAPLAKTDEIVLIGGNDNITNDVTRLVAQ
LPPSINALTGVDLSKVLSKIPGAKAASFLDH
BO16576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Flo2-PL | 440 | CG32593-PL | 1..430 | 1..430 | 2124 | 98.8 | Plus |
Flo2-PB | 425 | CG32593-PB | 1..425 | 1..425 | 2120 | 100 | Plus |
Flo2-PF | 425 | CG32593-PF | 1..425 | 1..425 | 2120 | 100 | Plus |
Flo2-PI | 435 | CG32593-PI | 1..435 | 1..425 | 2099 | 97.7 | Plus |
Flo2-PA | 438 | CG32593-PA | 1..438 | 1..425 | 2096 | 97 | Plus |