Clone BO16576 Report

Search the DGRC for BO16576

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptFlo-2-RB
Protein status:BO16576.pep: validated full length
Sequenced Size:1309

Clone Sequence Records

BO16576.3prime Sequence

630 bp (569 high quality bases) assembled on 2006-10-13

> BO16576.3prime
ATGGTCTAGAAAGCTTGCCGCCTTGGCCCCCGGTATCTTGGACAGAACCT
TGGACAAATCCACTCCGGTCAAGGCGTTGATCGATGGCGGTAGCTGGGCC
ACCAAGCGAGTCACATCGTTGGTTATATTATCGTTGCCGCCAATTAGGAC
AATCTCATCGGTTTTGGCCAGTGGTGCAGCCACCTCAGCGGCAATCTTGG
GCAGCGATTCGAGTACAATATTCATAATTGCTGCATCGCCGTACTGCTTG
TACACATGGGCCTTCATCCGCATGCGTTCCGCCTCCGCCTTGCCCACCAA
CTCGATGGCATGGGCCTCCGCCGATCCGATCTTGCGTATGCGCTCCGCCT
CGGCACGGGCACCCTCGATGGTCTGACATTGCTTGGCCTGCGCAAGGGTC
TGGAGGCGGAAGGCCTCGGCCTCGGCGGGCAGCTTGACTGTGCCAGTGAG
CTCGCGATCCTTGCGCTGCACTTCCTGCGACTCAATCTCGATCTGCTTGC
GTCGCTCCACCACCTCGATCTGAATCTCCTCGTTACGGATGCGCTGGCGG
ATCTTGGCTGCCTGCAGCTCGTANGCCAACTGCGATTCGGCCTTGGCCGT
GTTGATCTCCTGATCGAAATTGGCCTTCTG

BO16576.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PD 846 Flo-2-RD 232..843 630..19 3041 99.8 Minus
CG32593-PA 1317 Flo-2-RA 703..1314 630..19 3041 99.8 Minus
CG32593-PB 1278 Flo-2-RB 664..1275 630..19 3041 99.8 Minus
CG32593-PE 1317 Flo-2-RE 703..1314 630..19 3041 99.8 Minus
CG32593-PF 1278 Flo-2-RF 664..1275 630..19 3041 99.8 Minus
CG32593-PC 1206 Flo-2-RC 592..1203 630..19 3041 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RM 2602 CG32593-RM 1202..1813 630..19 3049 99.8 Minus
Flo2-RA 2819 CG32593-RA 849..1460 630..19 3049 99.8 Minus
Flo2-RH 2429 CG32593-RH 459..1070 630..19 3049 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14931064..14931314 630..380 1244 99.6 Minus
X 23542271 X 14931802..14931985 379..196 920 100 Minus
X 23542271 X 14932046..14932224 197..19 895 100 Minus
Blast to na_te.dros performed on 2015-02-02 16:55:40 has no hits.

BO16576.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:53:59 Download gff for BO16576.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PC 592..1206 16..630 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:33:56 Download gff for BO16576.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RG 792..1411 12..630 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:17 Download gff for BO16576.3prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RH 459..1078 12..630 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:17 Download gff for BO16576.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14931064..14931314 380..630 99 -> Minus
X 14931802..14931985 196..379 100 -> Minus
X 14932048..14932232 12..195 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:33:56 Download gff for BO16576.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14825097..14825347 380..630 99 -> Minus
arm_X 14825835..14826018 196..379 100 -> Minus
arm_X 14826081..14826265 12..195 98   Minus

BO16576.5prime Sequence

588 bp (526 high quality bases) assembled on 2006-10-13

> BO16576.5prime
GAAGTTATCAGTCGACATGGGCAACATACACACGACGGGTCCCAATGAGG
CGTTAATTGTTTCAGGTGGCTGCTGTGGATCGACCAAGAAGCGCACGATT
GTGGGCGGCTGGGCGTGGGCGTGGTGGCTGGTAACCGATGTCCAGCGACT
GTCCCTCAATGTGATGACCCTGAATCCGATGTGCGAGAATGTGGAAACGT
CGCAAGGTGTTCCGCTAACGGTGACCGGAGTGGCTCAATGCAAGATCATG
AAGGCCGACGAGCTTCTAGGCACTGCCAGCGAGCAATTCCTTGGAAAGAG
CGTCAAGGAGATCAAGCAGACGATCCTGCAAACCCTCGAAGGACATTTGA
GAGCCATATTGGGAACGCTTACAGTAGAAGAGGTGTACAAGGACCGCGAC
CAATTCGCTGCCTTGGTGCGCGAGGTGGCCGCACCGGACGTGGGTCGTAT
GGGCATCGAGATTCTCTCGTTTACGATCAAGGACGTCTACGATGATGTGC
AGTACCTGGCCTCGTTGGGCAAGGCCCAGACCGCCGTGGTCAAGCGGGAT
GCAGATGCCGGCGTGGCGGAGGCCAATCGAGATGCCGG

BO16576.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32593-PB 1278 Flo-2-RB 1..572 17..588 2860 100 Plus
CG32593-PF 1278 Flo-2-RF 1..572 17..588 2860 100 Plus
CG32593-PA 1317 Flo-2-RA 275..611 252..588 1685 100 Plus
CG32593-PE 1317 Flo-2-RE 275..611 252..588 1685 100 Plus
CG32593-PC 1206 Flo-2-RC 164..500 252..588 1685 100 Plus
CG32593-PA 1317 Flo-2-RA 1..237 17..253 1185 100 Plus
CG32593-PE 1317 Flo-2-RE 1..237 17..253 1185 100 Plus
CG32593-PD 846 Flo-2-RD 1..140 449..588 700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RB 2780 CG32593-RB 147..718 17..588 2860 100 Plus
Flo2-RF 2892 CG32593-RF 259..830 17..588 2860 100 Plus
Flo2-RL 2780 CG32593-RL 147..718 17..588 2860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14930972 362..588 1135 100 Plus
X 23542271 X 14924220..14924414 60..254 975 100 Plus
X 23542271 X 14926764..14926875 252..363 560 100 Plus
X 23542271 X 14840971..14841022 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:39:13 has no hits.

BO16576.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:00 Download gff for BO16576.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32593-PF 1..572 17..588 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:06:02 Download gff for BO16576.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RL 141..718 12..588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:46:14 Download gff for BO16576.5prime
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 141..718 12..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:46:14 Download gff for BO16576.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14840965..14841019 12..65 96 -> Plus
X 14924226..14924413 66..253 100 -> Plus
X 14926766..14926874 254..362 100 -> Plus
X 14930747..14930972 363..588 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:06:02 Download gff for BO16576.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14734998..14735052 12..65 96 -> Plus
arm_X 14818259..14818446 66..253 100 -> Plus
arm_X 14820799..14820907 254..362 100 -> Plus
arm_X 14824780..14825005 363..588 100   Plus

BO16576.complete Sequence

1309 bp assembled on 2007-03-23

GenBank Submission: FJ633868

> BO16576.complete
GAAGTTATCAGTCGACATGGGCAACATACACACGACGGGTCCCAATGAGG
CGTTAATTGTTTCAGGTGGCTGCTGTGGATCGACCAAGAAGCGCACGATT
GTGGGCGGCTGGGCGTGGGCGTGGTGGCTGGTAACCGATGTCCAGCGACT
GTCCCTCAATGTGATGACCCTGAATCCGATGTGCGAGAATGTGGAAACGT
CGCAAGGTGTTCCGCTAACGGTGACCGGAGTGGCTCAATGCAAGATCATG
AAGGCCGACGAGCTTCTAGGCACTGCCAGCGAGCAATTCCTTGGAAAGAG
CGTCAAGGAGATCAAGCAGACGATCCTGCAAACCCTCGAAGGACATTTGA
GAGCCATATTGGGAACGCTTACAGTAGAAGAGGTGTACAAGGACCGCGAC
CAATTCGCTGCCTTGGTGCGCGAGGTGGCCGCACCGGACGTGGGTCGTAT
GGGCATCGAGATTCTCTCGTTTACGATCAAGGACGTCTACGATGATGTGC
AGTACCTGGCCTCGTTGGGCAAGGCCCAGACCGCCGTGGTCAAGCGGGAT
GCAGATGCCGGCGTGGCGGAGGCCAATCGAGATGCCGGTATCCGTGAGGC
GGAGTGCGAAAAGAGCGCCATGGATGTGAAATACTCGACGGACACGAAAA
TCGAGGACAACACCAGGATGTACAAGCTGCAGAAGGCCAATTTCGATCAG
GAGATCAACACGGCCAAGGCCGAATCGCAGTTGGCCTACGAGCTGCAGGC
AGCCAAGATCCGCCAGCGCATCCGTAACGAGGAGATTCAGATCGAGGTGG
TGGAGCGACGCAAGCAGATCGAGATTGAGTCGCAGGAAGTGCAGCGCAAG
GATCGCGAGCTCACTGGCACAGTCAAGCTGCCCGCCGAGGCCGAGGCCTT
CCGCCTCCAGACCCTTGCGCAGGCCAAGCAATGTCAGACCATCGAGGGTG
CCCGTGCCGAGGCGGAGCGCATACGCAAGATCGGATCGGCGGAGGCCCAT
GCCATCGAGTTGGTGGGCAAGGCGGAGGCGGAACGCATGCGGATGAAGGC
CCATGTGTACAAGCAGTACGGCGATGCAGCAATTATGAATATTGTACTCG
AATCGCTGCCCAAGATTGCCGCTGAGGTGGCTGCACCACTGGCCAAAACC
GATGAGATTGTCCTAATTGGCGGCAACGATAATATAACCAACGATGTGAC
TCGCTTGGTGGCCCAGCTACCGCCATCGATCAACGCCTTGACCGGAGTGG
ATTTGTCCAAGGTTCTGTCCAAGATACCGGGGGCCAAGGCGGCAAGCTTT
CTAGACCAT

BO16576.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RB 1278 CG32593-PB 1..1275 17..1291 6375 100 Plus
Flo2-RF 1278 CG32593-PF 1..1275 17..1291 6375 100 Plus
Flo2-RL 1323 CG32593-PL 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-RB 2780 CG32593-RB 147..1421 17..1291 6375 100 Plus
Flo2-RF 2892 CG32593-RF 259..1533 17..1291 6375 100 Plus
Flo2-RL 2780 CG32593-RL 147..1421 17..1291 6375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14930746..14931314 362..930 2845 100 Plus
X 23542271 X 14924220..14924414 60..254 975 100 Plus
X 23542271 X 14931802..14931985 931..1114 920 100 Plus
X 23542271 X 14932046..14932224 1113..1291 895 100 Plus
X 23542271 X 14926764..14926875 252..363 560 100 Plus
X 23542271 X 14840971..14841022 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:10:14 has no hits.

BO16576.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:50 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 1..1278 17..1294 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:37 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 145..1419 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:18 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RL 147..1421 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:50 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-2-RB 139..1427 12..1298 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:28 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
Flo2-RL 147..1421 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:28 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
X 14840971..14841019 17..65 100 -> Plus
X 14924226..14924413 66..253 100 -> Plus
X 14926766..14926874 254..362 100 -> Plus
X 14930747..14931314 363..930 100 -> Plus
X 14931802..14931985 931..1114 100 -> Plus
X 14932048..14932224 1115..1293 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:18 Download gff for BO16576.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14735004..14735052 17..65 100 -> Plus
arm_X 14818259..14818446 66..253 100 -> Plus
arm_X 14820799..14820907 254..362 100 -> Plus
arm_X 14824780..14825347 363..930 100 -> Plus
arm_X 14825835..14826018 931..1114 100 -> Plus
arm_X 14826081..14826257 1115..1293 98   Plus

BO16576.pep Sequence

Translation from 16 to 1309

> BO16576.pep
MGNIHTTGPNEALIVSGGCCGSTKKRTIVGGWAWAWWLVTDVQRLSLNVM
TLNPMCENVETSQGVPLTVTGVAQCKIMKADELLGTASEQFLGKSVKEIK
QTILQTLEGHLRAILGTLTVEEVYKDRDQFAALVREVAAPDVGRMGIEIL
SFTIKDVYDDVQYLASLGKAQTAVVKRDADAGVAEANRDAGIREAECEKS
AMDVKYSTDTKIEDNTRMYKLQKANFDQEINTAKAESQLAYELQAAKIRQ
RIRNEEIQIEVVERRKQIEIESQEVQRKDRELTGTVKLPAEAEAFRLQTL
AQAKQCQTIEGARAEAERIRKIGSAEAHAIELVGKAEAERMRMKAHVYKQ
YGDAAIMNIVLESLPKIAAEVAAPLAKTDEIVLIGGNDNITNDVTRLVAQ
LPPSINALTGVDLSKVLSKIPGAKAASFLDH

BO16576.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Flo2-PL 440 CG32593-PL 1..430 1..430 2124 98.8 Plus
Flo2-PB 425 CG32593-PB 1..425 1..425 2120 100 Plus
Flo2-PF 425 CG32593-PF 1..425 1..425 2120 100 Plus
Flo2-PI 435 CG32593-PI 1..435 1..425 2099 97.7 Plus
Flo2-PA 438 CG32593-PA 1..438 1..425 2096 97 Plus