Clone BO16578 Report

Search the DGRC for BO16578

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptTg-RA
Protein status:BO16578.pep: validated full length
Sequenced Size:2362

Clone Sequence Records

BO16578.3prime Sequence

663 bp (609 high quality bases) assembled on 2006-10-13

> BO16578.3prime
ATGGTCTAGAAAGCTTGCAGCTATTACATCGGTGCGCCTGCGTATGATGT
TGCTGCTTCGGTGGCTTCCATTCGGCTGCAGCAGATCCTCCGGTCGTGGC
TCAATCTCGTAGTGCCTATAGCCATCCACATCGTCCAGTTCCTTGGACGT
GAATTTGGCTAACATGGTGCCACGCCCCGCGTAGGGCGGAGTGTACTTGA
AGGTAGCCGCCGCAGTGCCACCCACTGGAATTTCAGCGATCTTGAACTTG
AGAGGCTGCTCGATGCCAGGACCCTCCACTGTGAACACACCCTTGTGCAG
CGGTATGGGCAGCGGGTTCTCCAGTCGCAGAATAACGTCCAGCTCCTTCT
GGGCCACAATGGCAGCCTCACCCAGCTGGAACTTAATGTCCGGCTTGCGC
ACACGGAAATCATCCTGGGCATAGTAATCATAGTCGGTGTCCTTGACCTT
GGCGGCCGCCGAGATCTGGAATGCCGCCTGCGAGGACAACTTATCGTAGT
ATTCCTCGAAGATCACCTCCATGCGAACGTAATCGCTGCTCTTGGGCTCC
AATTCCAGTTCAAAGCCCAGTGTCTTCACCTCCACGGCACCCACTCCCGT
GTAGAGCACGGCATCGCAACTGATCTGACCCGTGGCCATGTGTGTGCGAC
TCTCGCTCTTGTT

BO16578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7356-PA 2331 CG7356-RA 1684..2328 663..19 3225 100 Minus
CG7356-PB 2307 CG7356-RB 1660..2304 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-RB 2601 CG7356-RB 1877..2521 663..19 3225 100 Minus
Tg-RA 2797 CG7356-RA 2024..2668 663..19 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8026061..8026483 663..241 2115 100 Minus
2L 23513712 2L 8026546..8026769 242..19 1120 100 Minus
Blast to na_te.dros performed on 2015-02-02 16:55:52 has no hits.

BO16578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:01 Download gff for BO16578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7356-PB 1660..2307 18..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:33:58 Download gff for BO16578.3prime
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 2024..2674 12..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:04:18 Download gff for BO16578.3prime
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 2024..2674 12..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:04:18 Download gff for BO16578.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8026061..8026483 241..663 100 -> Minus
2L 8026548..8026775 12..240 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:33:58 Download gff for BO16578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8026061..8026483 241..663 100 -> Minus
arm_2L 8026548..8026775 12..240 98   Minus

BO16578.5prime Sequence

709 bp (646 high quality bases) assembled on 2006-10-13

> BO16578.5prime
GAAGTTATCAGTCGACATGGGTCAAAAACTATCGTGTTGCCAAAAGTGCG
GCGATTGGAAGTGGTGTACATCTAAGGACAACGAGGAGTCAACGCTGCGT
ATACGCAATGCCAATGCCAACTATTTTACGGGCATTCCACAAGGCGACAA
AACAGATGGCGCCAGCTCAGCAGTATTGGGCGTTTTGAAGGTCGATCTGT
GCCTGGAGGACAACCATGAGGAGCACCATACGAGTCACTTCTATGCGGCA
GCTGCCAAGGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAA
GATCCACTTCAATCGAGACTACAGTCCCAGCAAGGACGCCATCAGTTTCA
TTTTCACAGTAGCGGATGACACCAAGCCGAGTCCCGGTCATGGAACACTC
AATGCCCTGGTGCCGCACGATGGCATCGATTATCTGGGCGACACTTTGGA
ATGGGGAGCCGGCATCGAATCGCATGAGGGTCAAACGCTTACGGTGCTAA
TCAAGCCACCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATCGAC
ACGAAGCTGCTGGGCGATGGATCGCGAAGCTATCCCCTGCCGTTGCCCAT
CTATGTACTCTTTAATCCCTGGTGTCCGGATGATCAGGTGTATCTGGAAG
ATCGTGATCAGCGCAAGGAGTACTTGATGCACGATACCACGCTCATCTGG
AGGGGATCG

BO16578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7356-PA 2331 CG7356-RA 1..693 17..709 3390 99.5 Plus
CG7356-PB 2307 CG7356-RB 114..669 154..709 2705 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-RA 2797 CG7356-RA 338..1033 14..709 3435 99.6 Plus
Tg-RB 2601 CG7356-RB 331..886 154..709 2735 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8024512..8025070 151..709 2750 99.5 Plus
2L 23513712 2L 8011742..8011883 14..155 710 100 Plus
Blast to na_te.dros performed on 2015-01-30 19:02:21 has no hits.

BO16578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:02 Download gff for BO16578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7356-PA 1..693 17..709 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:30:10 Download gff for BO16578.5prime
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 338..1033 14..709 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:47:08 Download gff for BO16578.5prime
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 338..1033 14..709 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:47:08 Download gff for BO16578.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8011742..8011883 14..155 100 -> Plus
2L 8024517..8025070 156..709 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:30:10 Download gff for BO16578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8011742..8011883 14..155 100 -> Plus
arm_2L 8024517..8025070 156..709 99   Plus

BO16578.complete Sequence

2362 bp assembled on 2007-03-23

GenBank Submission: FJ633869

> BO16578.complete
GAAGTTATCAGTCGACATGGGTCAAAAACTATCGTGTTGCCAAAAGTGCG
GCGATTGGAAGTGGTGTACATCTAAGGACAACGAGGAGTCAACGCTGCGT
ATACGCAATGCCAATGCCAACTATTTTACGGGCATTCCACAAGGCGACAA
AACAGATGGCGCCAGCTCAGCAGTATTGGGCGTTTTGAAGGTCGATCTGT
GCCTGGAGGACAACCATGAGGAGCACCATACGAGTCACTTCTATGCGGCA
GCTGCCAAGGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAA
GATCCACTTCAATCGAGACTACAGTCCCAGCAAGGACGCCATCAGTTTCA
TTTTCACAGTAGCGGATGACACCAAGCCGAGTCCCGGTCATGGAACACTC
AATGCCCTGGTGCCGCACGATGGCATCGATTATCTGGGCGACACTTTGGA
ATGGGGAGCCGGCATCGAATCGCATGAGGGTCAAACGCTTACGGTGCTAA
TCAAGCCACCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATCGAC
ACGAAGCTGCTGGGCGATGGATCGCGAAGCTATCCCCTGCCGTTGCCCAT
CTATGTACTCTTTAATCCCTGGTGTCCGGATGATCAGGTGTATCTGGAGG
ATCGTGATCAGCGCAAGGAGTACGTGATGCACGATACCACGCTCATCTGG
AGGGGATCGTACAACAGATTGCGTCCATCGGTTTGGAAAATCGGGCAATT
CGAACGACATGTGCTCGAGTGCAGCCTAAAGGTATTGGGTACGGTGGGCA
GGATTCCGCCAGCCTACAGAGGCGATCCCGTGAGAGTTGCTCGCGCCTTG
TCCGCACTGGTGAATTCGGTGGATGATGACGGTGTTTTGCTGGGCAACTG
GTCAGAGGACTTCTCCGGCGGCGTGGCACCCACCAAGTGGACTGGGTCCG
TGGAGATTCTTCAGCAATTCTACAAGACCCAGAAGTCGGTGAAGTTTGCA
CAGTGCTGGAATTTCAGCGGTGTTCTGACCACCATTGCCAGGAGTCTGGG
AATACCGTCTAGGATCATCACTTGCTACTCCTCCGCCCACGATACACAGG
CCTCACTCACCGTGGACGTGTTCATCGACGCGAACAACAAGAAGTTGGAT
GCAGAGACCACGGACTCGATCTGGAACTATCACGTGTGGAATGAGCTCTG
GATGCAGAGACCGGATTTGGGCGTGGGTGAGCACGGGACCTTCGATGGCT
GGCAGGTGGTGGACGCCACTCCGCAGGAGGCCTCCGATAATATGTATCGC
GTGGGACCCGCCTCCGTTGCGGCGGTGAAAAACGGTGACATCTTGCGACC
ATTCGATGGTGGTTTCGTCTTCGCGGAGGTGAATGCGGATAAGCTCTATT
GGCGCTACAATGGACCCAGCCAGCCGCTTAAGCTGCTCAGGAAGGATACG
CTGGCCATAGGGCATCTCATCAGCACGAAAGCGGTACTCAAATGGGAAAG
GGAGGACATCACCGATACGTATAAGCATGCCGAGCGCTCCGAGGAGGAGA
GAAGCACCATGCTCAAGGCCCTCAAGCAATCCCGACATGCGTTCAGTAGA
TACTATCTGAATGATAATTTCAATGATATTGAATTTGATATGGAGCTAAA
GGACGACATTAAGATTGGGCAGAGCTTCAGTGTGGTCCTGAAGGTGAGCA
ACAAGAGCGAGAGTCGCACACACATGGCCACGGGTCAGATCAGTTGCGAT
GCCGTGCTCTACACGGGAGTGGGTGCCGTGGAGGTGAAGACACTGGGCTT
TGAACTGGAATTGGAGCCCAAGAGCAGCGATTACGTTCGCATGGAGGTGA
TCTTCGAGGAATACTACGATAAGTTGTCCTCGCAGGCGGCATTCCAGATC
TCGGCGGCCGCCAAGGTCAAGGACACCGACTATGATTACTATGCCCAGGA
TGATTTCCGTGTGCGCAAGCCGGACATTAAGTTCCAGCTGGGTGAGGCTG
CCATTGTGGCCCAGAAGGAGCTGGACGTTATTCTGCGACTGGAGAACCCG
CTGCCCATACCGCTGCACAAGGGTGTGTTCACAGTGGAGGGTCCTGGCAT
CGAGCAGCCTCTCAAGTTCAAGATCGCTGAAATTCCAGTGGGTGGCACTG
CGGCGGCTACCTTCAAGTACACTCCGCCCTACGCGGGGCGTGGCACCATG
TTAGCCAAATTCACGTCCAAGGAACTGGACGATGTGGATGGCTATAGGCA
CTACGAGATTGAGCCACGACCGGAGGATCTGCTGCAGCCGAATGGAAGCC
ACCGAAGCAGCAACATCATACGCAGGCGCACCGATGTAATAGCTGCAAGC
TTTCTAGACCAT

BO16578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-RA 2331 CG7356-PA 1..2328 17..2344 11625 100 Plus
Tg-RB 2307 CG7356-PB 114..2304 154..2344 10940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-RA 2797 CG7356-RA 338..2668 14..2344 11640 100 Plus
Tg-RB 2601 CG7356-RB 331..2521 154..2344 10940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8024512..8026483 151..2122 9845 99.9 Plus
2L 23513712 2L 8026546..8026769 2121..2344 1120 100 Plus
2L 23513712 2L 8011742..8011883 14..155 710 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:09:16 has no hits.

BO16578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:34 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 1..2331 17..2345 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:26 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 339..2666 17..2346 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:14 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 341..2668 17..2346 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:34 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
CG7356-RA 336..2672 14..2351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:03 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
Tg-RA 341..2668 17..2346 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:03 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8011745..8011883 17..155 100 -> Plus
2L 8024517..8026483 156..2122 99 -> Plus
2L 8026548..8026769 2123..2346 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:14 Download gff for BO16578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8011745..8011883 17..155 100 -> Plus
arm_2L 8024517..8026483 156..2122 99 -> Plus
arm_2L 8026548..8026769 2123..2346 99   Plus

BO16578.pep Sequence

Translation from 16 to 2362

> BO16578.pep
MGQKLSCCQKCGDWKWCTSKDNEESTLRIRNANANYFTGIPQGDKTDGAS
SAVLGVLKVDLCLEDNHEEHHTSHFYAAAAKEALVVRRGEPFRLKIHFNR
DYSPSKDAISFIFTVADDTKPSPGHGTLNALVPHDGIDYLGDTLEWGAGI
ESHEGQTLTVLIKPPSTCPVTEWKLDIDTKLLGDGSRSYPLPLPIYVLFN
PWCPDDQVYLEDRDQRKEYVMHDTTLIWRGSYNRLRPSVWKIGQFERHVL
ECSLKVLGTVGRIPPAYRGDPVRVARALSALVNSVDDDGVLLGNWSEDFS
GGVAPTKWTGSVEILQQFYKTQKSVKFAQCWNFSGVLTTIARSLGIPSRI
ITCYSSAHDTQASLTVDVFIDANNKKLDAETTDSIWNYHVWNELWMQRPD
LGVGEHGTFDGWQVVDATPQEASDNMYRVGPASVAAVKNGDILRPFDGGF
VFAEVNADKLYWRYNGPSQPLKLLRKDTLAIGHLISTKAVLKWEREDITD
TYKHAERSEEERSTMLKALKQSRHAFSRYYLNDNFNDIEFDMELKDDIKI
GQSFSVVLKVSNKSESRTHMATGQISCDAVLYTGVGAVEVKTLGFELELE
PKSSDYVRMEVIFEEYYDKLSSQAAFQISAAAKVKDTDYDYYAQDDFRVR
KPDIKFQLGEAAIVAQKELDVILRLENPLPIPLHKGVFTVEGPGIEQPLK
FKIAEIPVGGTAAATFKYTPPYAGRGTMLAKFTSKELDDVDGYRHYEIEP
RPEDLLQPNGSHRSSNIIRRRTDVIAASFLDH

BO16578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Tg-PA 776 CG7356-PA 1..776 1..776 4119 100 Plus
Tg-PB 768 CG7356-PB 33..768 41..776 3864 99.5 Plus