Clone BO16579 Report

Search the DGRC for BO16579

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptVha16-1-RA
Protein status:BO16579.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO16579.3prime Sequence

509 bp (509 high quality bases) assembled on 2006-10-13

> BO16579.3prime
ATGGTCTAGAAAGCTTGCTTTCGTGTACAGGTAAATGGCCACAATCAAGC
CGTAGAGACCCAACACTTCGGCGAAGATGAGAATCAGGATCATGCCCACG
AACAGTCTAGGCTGCTGTGCTGTGCCACGGACACCGGCGTCTCCCACGAT
GCCGATCGCAAAACCAGCTGCCAGACCAGAGAAGCCCACCGCCAGACCGG
CTCCCAAGTGAATGAAGCCCCTGTATAGTGAGTACTTTGATGGCTCTTCC
AGCGCGCCGGCAATAAGCACAGCCACCACCAGACCGTAAATGGCAATGAT
ACCCGCCATGACCACAGGAATGATGGATTTCATGATCAGTTCAGGCCGCA
TCACTGACATGGCAGCAATACCGGTACCAGACTTAGCAGTGCCATAAGCA
GCGCCCAGGGCCGAGAAGATGATGGCGGAGGCGGCTCCCATAACTCCGAA
GAAGGGGCCATAGATGGGGTTGTCGCTGCTCACTTCAGAAGACATGTCGA
CTGATAACT

BO16579.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3161-PA 480 Vha16-RA 1..477 495..19 2385 100 Minus
CG3161-PB 480 Vha16-RB 1..477 495..19 2385 100 Minus
CG3161-PC 480 Vha16-RC 1..477 495..19 2385 100 Minus
CG3161-PD 480 Vha16-RD 1..477 495..19 2385 100 Minus
CG6737-PA 582 CG6737-RA 256..314 333..275 195 93.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 2798 CG3161-RB 91..567 495..19 2385 100 Minus
Vha16-1-RA 2833 CG3161-RA 126..602 495..19 2385 100 Minus
Vha16-1-RD 2816 CG3161-RD 109..585 495..19 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6627473..6627677 19..223 1025 100 Plus
2R 25286936 2R 6627731..6627922 220..411 960 100 Plus
3L 28110227 3L 11473465..11473877 441..23 515 75.4 Minus
2R 25286936 2R 6632027..6632111 411..495 425 100 Plus
2L 23513712 2L 10736644..10736723 275..354 265 88.8 Plus
3L 28110227 3L 11475385..11475464 102..23 205 83.8 Minus
Blast to na_te.dros performed on 2015-02-12 19:24:19 has no hits.

BO16579.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:02 Download gff for BO16579.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3161-PD 1..480 15..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:34:03 Download gff for BO16579.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..588 15..502 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:07:56 Download gff for BO16579.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..588 15..502 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:07:56 Download gff for BO16579.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6627469..6627674 15..220 99 <- Plus
2R 6627732..6627921 221..410 100 <- Plus
2R 6632027..6632117 411..502 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:34:03 Download gff for BO16579.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2514974..2515179 15..220 99 <- Plus
arm_2R 2515237..2515426 221..410 100 <- Plus
arm_2R 2519532..2519622 411..502 96   Plus

BO16579.5prime Sequence

509 bp (509 high quality bases) assembled on 2006-10-13

> BO16579.5prime
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAAGCAAGCT
TTCTAGACC

BO16579.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3161-PA 480 Vha16-RA 1..477 17..493 2385 100 Plus
CG3161-PB 480 Vha16-RB 1..477 17..493 2385 100 Plus
CG3161-PC 480 Vha16-RC 1..477 17..493 2385 100 Plus
CG3161-PD 480 Vha16-RD 1..477 17..493 2385 100 Plus
CG6737-PA 582 CG6737-RA 256..314 179..237 195 93.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 2798 CG3161-RB 91..567 17..493 2385 100 Plus
Vha16-1-RA 2833 CG3161-RA 126..602 17..493 2385 100 Plus
Vha16-1-RD 2816 CG3161-RD 109..585 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6627473..6627677 493..289 1025 100 Minus
2R 25286936 2R 6627731..6627922 292..101 960 100 Minus
3L 28110227 3L 11473465..11473877 71..489 515 75.4 Plus
2R 25286936 2R 6632027..6632111 101..17 425 100 Minus
2L 23513712 2L 10736644..10736723 237..158 265 88.8 Minus
3L 28110227 3L 11475385..11475464 410..489 205 83.8 Plus
Blast to na_te.dros performed on 2015-02-10 23:00:46 has no hits.

BO16579.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:04 Download gff for BO16579.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3161-PD 1..480 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 17:59:52 Download gff for BO16579.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..588 10..497 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:39 Download gff for BO16579.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 103..588 10..497 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:39 Download gff for BO16579.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6627469..6627674 292..497 99 <- Minus
2R 6627732..6627921 102..291 100 <- Minus
2R 6632027..6632117 10..101 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 17:59:52 Download gff for BO16579.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2514974..2515179 292..497 99 <- Minus
arm_2R 2515237..2515426 102..291 100 <- Minus
arm_2R 2519532..2519622 10..101 96   Minus

BO16579.complete Sequence

511 bp assembled on 2007-10-17

GenBank Submission: FJ633870

> BO16579.complete
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAAGCAAGCT
TTCTAGACCAT

BO16579.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 480 CG3161-PB 1..477 17..493 2385 100 Plus
Vha16-1-RA 480 CG3161-PA 1..477 17..493 2385 100 Plus
Vha16-1-RD 480 CG3161-PD 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-RB 2798 CG3161-RB 91..567 17..493 2385 100 Plus
Vha16-1-RA 2833 CG3161-RA 126..602 17..493 2385 100 Plus
Vha16-1-RD 2816 CG3161-RD 109..585 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6627473..6627677 493..289 1025 100 Minus
2R 25286936 2R 6627731..6627922 292..101 960 100 Minus
3L 28110227 3L 11473465..11473877 71..489 515 75.4 Plus
2R 25286936 2R 6632027..6632111 101..17 425 100 Minus
2L 23513712 2L 10736644..10736723 237..158 265 88.8 Minus
3L 28110227 3L 11475385..11475464 410..489 205 83.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:34:39 has no hits.

BO16579.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:11 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-RC 1..480 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:48 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-RA 158..643 10..497 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:43 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 109..585 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:57 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-RA 164..640 17..495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:08 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
Vha16-1-RD 109..585 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:08 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6632027..6632111 17..101 100   Minus
2R 6627471..6627674 292..495 99 <- Minus
2R 6627732..6627921 102..291 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:43 Download gff for BO16579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2514976..2515179 292..495 99 <- Minus
arm_2R 2515237..2515426 102..291 100 <- Minus
arm_2R 2519532..2519616 17..101 100   Minus

BO16579.pep Sequence

Translation from 16 to 511

> BO16579.pep
MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR
PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAG
LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL
IVAIYLYTKASFLDH

BO16579.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
Vha16-1-PB 159 CG3161-PB 1..159 1..159 776 100 Plus
Vha16-1-PA 159 CG3161-PA 1..159 1..159 776 100 Plus
Vha16-1-PD 159 CG3161-PD 1..159 1..159 776 100 Plus
Vha16-1-PC 159 CG3161-PC 1..159 1..159 776 100 Plus
Vha16-3-PB 158 CG32090-PB 9..158 8..159 634 86.2 Plus