Clone Sequence Records
BO16579.3prime Sequence
509 bp (509 high quality bases) assembled on 2006-10-13
> BO16579.3prime
ATGGTCTAGAAAGCTTGCTTTCGTGTACAGGTAAATGGCCACAATCAAGC
CGTAGAGACCCAACACTTCGGCGAAGATGAGAATCAGGATCATGCCCACG
AACAGTCTAGGCTGCTGTGCTGTGCCACGGACACCGGCGTCTCCCACGAT
GCCGATCGCAAAACCAGCTGCCAGACCAGAGAAGCCCACCGCCAGACCGG
CTCCCAAGTGAATGAAGCCCCTGTATAGTGAGTACTTTGATGGCTCTTCC
AGCGCGCCGGCAATAAGCACAGCCACCACCAGACCGTAAATGGCAATGAT
ACCCGCCATGACCACAGGAATGATGGATTTCATGATCAGTTCAGGCCGCA
TCACTGACATGGCAGCAATACCGGTACCAGACTTAGCAGTGCCATAAGCA
GCGCCCAGGGCCGAGAAGATGATGGCGGAGGCGGCTCCCATAACTCCGAA
GAAGGGGCCATAGATGGGGTTGTCGCTGCTCACTTCAGAAGACATGTCGA
CTGATAACT
BO16579.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3161-PA | 480 | Vha16-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
CG3161-PB | 480 | Vha16-RB | 1..477 | 495..19 | 2385 | 100 | Minus |
CG3161-PC | 480 | Vha16-RC | 1..477 | 495..19 | 2385 | 100 | Minus |
CG3161-PD | 480 | Vha16-RD | 1..477 | 495..19 | 2385 | 100 | Minus |
CG6737-PA | 582 | CG6737-RA | 256..314 | 333..275 | 195 | 93.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 2798 | CG3161-RB | 91..567 | 495..19 | 2385 | 100 | Minus |
Vha16-1-RA | 2833 | CG3161-RA | 126..602 | 495..19 | 2385 | 100 | Minus |
Vha16-1-RD | 2816 | CG3161-RD | 109..585 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6627473..6627677 | 19..223 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 6627731..6627922 | 220..411 | 960 | 100 | Plus |
3L | 28110227 | 3L | 11473465..11473877 | 441..23 | 515 | 75.4 | Minus |
2R | 25286936 | 2R | 6632027..6632111 | 411..495 | 425 | 100 | Plus |
2L | 23513712 | 2L | 10736644..10736723 | 275..354 | 265 | 88.8 | Plus |
3L | 28110227 | 3L | 11475385..11475464 | 102..23 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:24:19 has no hits.
BO16579.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:02 Download gff for
BO16579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3161-PD | 1..480 | 15..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:34:03 Download gff for
BO16579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..588 | 15..502 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:07:56 Download gff for
BO16579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..588 | 15..502 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:07:56 Download gff for
BO16579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6627469..6627674 | 15..220 | 99 | <- | Plus |
2R | 6627732..6627921 | 221..410 | 100 | <- | Plus |
2R | 6632027..6632117 | 411..502 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:34:03 Download gff for
BO16579.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2514974..2515179 | 15..220 | 99 | <- | Plus |
arm_2R | 2515237..2515426 | 221..410 | 100 | <- | Plus |
arm_2R | 2519532..2519622 | 411..502 | 96 | | Plus |
BO16579.5prime Sequence
509 bp (509 high quality bases) assembled on 2006-10-13
> BO16579.5prime
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAAGCAAGCT
TTCTAGACC
BO16579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3161-PA | 480 | Vha16-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG3161-PB | 480 | Vha16-RB | 1..477 | 17..493 | 2385 | 100 | Plus |
CG3161-PC | 480 | Vha16-RC | 1..477 | 17..493 | 2385 | 100 | Plus |
CG3161-PD | 480 | Vha16-RD | 1..477 | 17..493 | 2385 | 100 | Plus |
CG6737-PA | 582 | CG6737-RA | 256..314 | 179..237 | 195 | 93.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 2798 | CG3161-RB | 91..567 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RA | 2833 | CG3161-RA | 126..602 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RD | 2816 | CG3161-RD | 109..585 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6627473..6627677 | 493..289 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 6627731..6627922 | 292..101 | 960 | 100 | Minus |
3L | 28110227 | 3L | 11473465..11473877 | 71..489 | 515 | 75.4 | Plus |
2R | 25286936 | 2R | 6632027..6632111 | 101..17 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10736644..10736723 | 237..158 | 265 | 88.8 | Minus |
3L | 28110227 | 3L | 11475385..11475464 | 410..489 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:00:46 has no hits.
BO16579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:04 Download gff for
BO16579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3161-PD | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 17:59:52 Download gff for
BO16579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..588 | 10..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:12:39 Download gff for
BO16579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 103..588 | 10..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:12:39 Download gff for
BO16579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6627469..6627674 | 292..497 | 99 | <- | Minus |
2R | 6627732..6627921 | 102..291 | 100 | <- | Minus |
2R | 6632027..6632117 | 10..101 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 17:59:52 Download gff for
BO16579.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2514974..2515179 | 292..497 | 99 | <- | Minus |
arm_2R | 2515237..2515426 | 102..291 | 100 | <- | Minus |
arm_2R | 2519532..2519622 | 10..101 | 96 | | Minus |
BO16579.complete Sequence
511 bp assembled on 2007-10-17
GenBank Submission: FJ633870
> BO16579.complete
GAAGTTATCAGTCGACATGTCTTCTGAAGTGAGCAGCGACAACCCCATCT
ATGGCCCCTTCTTCGGAGTTATGGGAGCCGCCTCCGCCATCATCTTCTCG
GCCCTGGGCGCTGCTTATGGCACTGCTAAGTCTGGTACCGGTATTGCTGC
CATGTCAGTGATGCGGCCTGAACTGATCATGAAATCCATCATTCCTGTGG
TCATGGCGGGTATCATTGCCATTTACGGTCTGGTGGTGGCTGTGCTTATT
GCCGGCGCGCTGGAAGAGCCATCAAAGTACTCACTATACAGGGGCTTCAT
TCACTTGGGAGCCGGTCTGGCGGTGGGCTTCTCTGGTCTGGCAGCTGGTT
TTGCGATCGGCATCGTGGGAGACGCCGGTGTCCGTGGCACAGCACAGCAG
CCTAGACTGTTCGTGGGCATGATCCTGATTCTCATCTTCGCCGAAGTGTT
GGGTCTCTACGGCTTGATTGTGGCCATTTACCTGTACACGAAAGCAAGCT
TTCTAGACCAT
BO16579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 480 | CG3161-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RA | 480 | CG3161-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RD | 480 | CG3161-PD | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-RB | 2798 | CG3161-RB | 91..567 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RA | 2833 | CG3161-RA | 126..602 | 17..493 | 2385 | 100 | Plus |
Vha16-1-RD | 2816 | CG3161-RD | 109..585 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6627473..6627677 | 493..289 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 6627731..6627922 | 292..101 | 960 | 100 | Minus |
3L | 28110227 | 3L | 11473465..11473877 | 71..489 | 515 | 75.4 | Plus |
2R | 25286936 | 2R | 6632027..6632111 | 101..17 | 425 | 100 | Minus |
2L | 23513712 | 2L | 10736644..10736723 | 237..158 | 265 | 88.8 | Minus |
3L | 28110227 | 3L | 11475385..11475464 | 410..489 | 205 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:39 has no hits.
BO16579.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:11 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-RC | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:48 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-RA | 158..643 | 10..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:43 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 109..585 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:57 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-RA | 164..640 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:08 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha16-1-RD | 109..585 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:08 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6632027..6632111 | 17..101 | 100 | | Minus |
2R | 6627471..6627674 | 292..495 | 99 | <- | Minus |
2R | 6627732..6627921 | 102..291 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:43 Download gff for
BO16579.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2514976..2515179 | 292..495 | 99 | <- | Minus |
arm_2R | 2515237..2515426 | 102..291 | 100 | <- | Minus |
arm_2R | 2519532..2519616 | 17..101 | 100 | | Minus |
BO16579.pep Sequence
Translation from 16 to 511
> BO16579.pep
MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR
PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAG
LAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGL
IVAIYLYTKASFLDH
BO16579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha16-1-PB | 159 | CG3161-PB | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-1-PA | 159 | CG3161-PA | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-1-PD | 159 | CG3161-PD | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-1-PC | 159 | CG3161-PC | 1..159 | 1..159 | 776 | 100 | Plus |
Vha16-3-PB | 158 | CG32090-PB | 9..158 | 8..159 | 634 | 86.2 | Plus |