Clone Sequence Records
BO16586.complete Sequence
1456 bp assembled on 2010-04-13
GenBank Submission: KX795990
> BO16586.complete
GAAGTTATCAGTCGACATGCCCAAAAGCGAGGCCGCCACAATGATAACCA
ACAATAATTTGGATTATGACCAGGCCAGCGCCAGCAGCACAATAATAGCA
GGAGCTACATCGACGACCGCGGGCACAGCGGCAACATCGGTGGCCATGAG
CAACAGAAATGGCAGCACCAGCAGCAGCAGCAACTCCTCGCCCACGGCGG
ACAATTCCAATTCCAATTCCAACTCGAATTCAAACGCAAATATAAATCGG
AATTTGAATCAGAACCCCAACTCGAACTCCAATACAAACTCCAATTCGTA
TTTCAACCGATTCGACAATCGCATAGCTGCCAACTTGGCTGCCGTTTTAA
CTGGCGCAGGAGCCCGTTTTCGATCCTCCTCCTGCAGCAATCGCCATCCA
GCTGGAGTTGCAAATCCGGCCGTTTTGAGATCACCACTCGCCACAATAAG
CCGCAAGACTAGTCTGGCCACGCCCCCTTCACCAGCGAGTCTAGGACGAC
GCCGCCCACTGCAACTCTTCACGCACGCGAATCTCAATTGCAATGACAAC
GAGAAGGTGGCCCAAACACCAAGCTCCGATGAGGATAATTCGCCCACCGA
ACTAAACAGCTGCAAGCGATTGGCAGACAAACCTCCTCTGGTCAAACGCT
TGACAATGGGCTTGCTGCGCCAAAACGAGGAGTCACGCCCATTGGTGGGC
GACATGACTCCTTTGAGCGCGCCGCTGGACATCCAGCCGGTGTACTCGAA
TGGCTACATCAACGAGGACTCCTACATCGACAGCAAGTTCGGTGACTCGT
GCCGCCAATCCTTGACAGCCATCCCGATGCTGGACAATGTTAACCTGAAC
GACAATAACGAGTTCAACCTGAAGAAGCGCTACTTAAGAGAAACGAGCAG
CGCAAATTCCAGTCCGAAAATCTTTGCCAATCGCCTGCGGATGAACCAGG
GTGCCGTTGGCCAGCGATGCAGCAGTTTGGCCAACGCATTCGGTAATGTG
GGATCCGATGAGGAGGATCTCGAGCTGAAGGATGCCTGCTGGTACCAGGC
GGGCATATCCAGGGACATAGCCGTTGAAGTCCTGCAAAGCAAGAGCCCAG
GTGCGTTTCTCGTGCGGAAGAGCAGCTCCAAACCAGGATGCTATGCACTG
ACACTGCGCGTACCCTCGCCACCTGGGCCGAAAATAGCTAACTACATAAT
CCTACGTTCCCCAAGGGGCTACAAAATCAAGGGTTTCCGCAAGGAGTTCT
CCAGCCTGAAGGCCCTGATCACCCACCATTCGGTGATGCCCGAACTGCTG
CCCGTCCCACTGGCCATGCCACGTCCCACCAACATGTCATCTTCGCGGCG
GAATCTCGACGACTTCGATACCTACGATTCGCTGCAGATGCTGCTGAAGT
ATCTGCGTGCCAAGAACATGGAGACGGAGCAGCAGCAGGCAAGCTTTCTA
GACCAT
BO16586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 1425 | CG32406-PA | 1..1422 | 17..1438 | 7110 | 100 | Plus |
CG33993-RB | 777 | CG33993-PB | 349..647 | 1022..1323 | 260 | 73.2 | Plus |
CG33993-RA | 1266 | CG33993-PA | 838..1136 | 1022..1323 | 260 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 2919 | CG32406-RA | 805..2226 | 17..1438 | 7110 | 100 | Plus |
CG33993-RB | 1316 | CG33993-RB | 483..781 | 1022..1323 | 260 | 73.2 | Plus |
CG33993-RA | 2404 | CG33993-RA | 1242..1540 | 1022..1323 | 260 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6019337..6019857 | 17..537 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 6025008..6025338 | 902..1232 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 6024630..6024892 | 640..902 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 6025416..6025624 | 1230..1438 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 6020060..6020164 | 538..642 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5933900..5933967 | 1323..1256 | 205 | 86.8 | Minus |
Blast to na_te.dros performed 2014-11-27 10:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6821 | 81..184 | 215 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6917 | 76..184 | 211 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6863 | 76..187 | 203 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 78..184 | 188 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2546 | 76..216 | 178 | 62 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1241 | 97..278 | 169 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2859 | 70..187 | 147 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..3005 | 76..202 | 141 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2367 | 126..184 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2364 | 121..184 | 122 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6788 | 125..184 | 119 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 129..184 | 115 | 69.6 | Plus |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 570..649 | 233..309 | 113 | 63.7 | Plus |
BO16586.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:21 Download gff for
BO16586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 799..2220 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:43 Download gff for
BO16586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 805..2226 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:52 Download gff for
BO16586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PVRAP-RA | 805..2226 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:52 Download gff for
BO16586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6024631..6024892 | 641..902 | 100 | -> | Plus |
3L | 6025009..6025337 | 903..1231 | 100 | -> | Plus |
3L | 6025418..6025624 | 1232..1440 | 99 | | Plus |
3L | 6019337..6019857 | 17..537 | 100 | -> | Plus |
3L | 6020060..6020162 | 538..640 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:43 Download gff for
BO16586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6012437..6012957 | 17..537 | 100 | -> | Plus |
arm_3L | 6013160..6013262 | 538..640 | 100 | -> | Plus |
arm_3L | 6017731..6017992 | 641..902 | 100 | -> | Plus |
arm_3L | 6018109..6018437 | 903..1231 | 100 | -> | Plus |
arm_3L | 6018518..6018724 | 1232..1440 | 99 | | Plus |
BO16586.3prime Sequence
592 bp (493 high quality bases) assembled on 2006-10-13
> BO16586.3prime
ATGGTCTAGAAAGCTTGCCTGCTGCTGCTCCGTCTCCATGTTCTTGGCAC
GCAGATACTTCAGCAGCATCTGCAGCGAATCGTAGGTATCGAAGTCGTCG
AGATTCCGCCGCGAAGATGACATGTTGGTGGGACGTGGCATGGCCAGTGG
GACGGGCAGCAGTTCGGGCATCACCGAATGGTGGGTGATCAGGGCCTTCA
GGCTGGAGAACTCCTTGCGGAAACCCTTGATTTTGTAGCCCCTTGGGGAA
CGTAGGATTATGTAGTTAGCTATTTTCGGCCCAGGTGGCGAGGGTACGCG
CAGTGTCAGTGCATAGCATCCTGGTTTGGAGCTGCTCTTCCGCACGAGAA
ACGCACCTGGGCTCTTGCTTTGCAGGACTTCAACGGCTATGTCCCTGGAT
ATGCCCGCCTGGTACCAGCAGGCATCCTTCAGCTCGAGATCCTCCTCATC
GGATCCCACATTACCGAATGCGTTGGCCAAACTGCTGCATCGCTGGCCCA
CGGCACCCTGGTTCATCCGCAGGCGATTGGCAAAGATTTTCGGACTGGAA
TTTGCGCTGCTCGTTTCTCTTAAGTAGCGCTTCTTCAAGTTG
BO16586.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:21:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32406-PA | 1425 | CG32406-RA | 854..1422 | 587..19 | 2820 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 2919 | CG32406-RA | 1653..2226 | 592..19 | 2840 | 99.7 | Minus |
CG33993-RB | 1316 | CG33993-RB | 483..787 | 435..127 | 295 | 73.5 | Minus |
CG33993-RA | 2404 | CG33993-RA | 1242..1546 | 435..127 | 295 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6025008..6025338 | 555..225 | 1640 | 99.7 | Minus |
3L | 28110227 | 3L | 6025416..6025624 | 227..19 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 5933900..5933967 | 134..201 | 205 | 86.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:02:25 has no hits.
BO16586.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:12 Download gff for
BO16586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-PA | 849..1425 | 18..592 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:00:02 Download gff for
BO16586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 1653..2231 | 12..592 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:45 Download gff for
BO16586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PVRAP-RA | 1653..2231 | 12..592 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:45 Download gff for
BO16586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6025009..6025337 | 226..554 | 99 | -> | Minus |
3L | 6025418..6025629 | 12..225 | 98 | | Minus |
3L | 6024855..6024892 | 555..592 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:00:02 Download gff for
BO16586.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6017955..6017992 | 555..592 | 97 | -> | Minus |
arm_3L | 6018518..6018729 | 12..225 | 98 | | Minus |
arm_3L | 6018109..6018437 | 226..554 | 99 | -> | Minus |
BO16586.5prime Sequence
594 bp (541 high quality bases) assembled on 2006-10-13
> BO16586.5prime
GAAGTTATCAGTCGACATGCCCAAAAGCGAGGCCGCCACAATGATAACCA
ACAATAATTTGGATTATGACCAGGCCAGCGCCAGCAGCACAATAATAGCA
GGAGCTACATCGACGACCGCGGGCACAGCGGCAACATCGGTGGCCATGAG
CAACAGAAATGGCAGCACCAGCAGCAGCAGCAACTCCTCGCCCACGGCGG
ACAATTCCAATTCCAATTCCAACTCGAATTCAAACGCAAATATAAATCGG
AATTTGAATCAGAACCCCAACTCGAACTCCAATACAAACTCCAATTCGTA
TTTCAACCGATTCGACAATCGCATAGCTGCCAACTTGGCTGCCGTTTTAA
CTGGCGCAGGAGCCCGTTTTCGATCCTCCTCCTGCAGCAATCGCCATCCA
GCTGGAGTTGCAAATCCGGCCGTTTTGAGATCACCACTCGCCACAATAAG
CCGCAAGACTAGTCTGGCCACGCCCCCTTCACCAGCGAGTCTAGGACGAC
GCCGCCCACTGCAACTCTTCACGCACGCGAATCTCAATTGCAATGGACAC
GAGAAGGTGGCCCAAACACCAAGCTCCGATGAGGATAATTCGCC
BO16586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32406-PA | 1425 | CG32406-RA | 1..578 | 17..594 | 2815 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-RA | 2919 | CG32406-RA | 805..1382 | 17..594 | 2845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6019337..6019857 | 17..537 | 2605 | 100 | Plus |
3L | 28110227 | 3L | 6020060..6020116 | 538..594 | 240 | 94.7 | Plus |
Blast to na_te.dros performed 2015-02-12 10:44:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6821 | 81..184 | 215 | 70.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6917 | 76..184 | 211 | 68.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6863 | 76..187 | 203 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2421 | 78..184 | 188 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2412..2546 | 76..216 | 178 | 62 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1065..1241 | 97..278 | 169 | 57.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2739..2859 | 70..187 | 147 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2868..3005 | 76..202 | 141 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2367 | 126..184 | 132 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2364 | 121..184 | 122 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6788 | 125..184 | 119 | 71.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1572 | 129..184 | 115 | 69.6 | Plus |
Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 570..649 | 233..309 | 113 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1097 | 149..184 | 108 | 77.8 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 595..628 | 260..293 | 107 | 79.4 | Plus |
BO16586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:13 Download gff for
BO16586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-PA | 1..578 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:38:48 Download gff for
BO16586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32406-RA | 800..1382 | 10..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:36 Download gff for
BO16586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PVRAP-RA | 800..1382 | 10..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:36 Download gff for
BO16586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6019332..6019857 | 10..537 | 99 | -> | Plus |
3L | 6020060..6020116 | 538..594 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:38:48 Download gff for
BO16586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6012432..6012957 | 10..537 | 99 | -> | Plus |
arm_3L | 6013160..6013216 | 538..594 | 96 | | Plus |
BO16586.pep Sequence
Translation from 16 to 1456
> BO16586.pep
MPKSEAATMITNNNLDYDQASASSTIIAGATSTTAGTAATSVAMSNRNGS
TSSSSNSSPTADNSNSNSNSNSNANINRNLNQNPNSNSNTNSNSYFNRFD
NRIAANLAAVLTGAGARFRSSSCSNRHPAGVANPAVLRSPLATISRKTSL
ATPPSPASLGRRRPLQLFTHANLNCNDNEKVAQTPSSDEDNSPTELNSCK
RLADKPPLVKRLTMGLLRQNEESRPLVGDMTPLSAPLDIQPVYSNGYINE
DSYIDSKFGDSCRQSLTAIPMLDNVNLNDNNEFNLKKRYLRETSSANSSP
KIFANRLRMNQGAVGQRCSSLANAFGNVGSDEEDLELKDACWYQAGISRD
IAVEVLQSKSPGAFLVRKSSSKPGCYALTLRVPSPPGPKIANYIILRSPR
GYKIKGFRKEFSSLKALITHHSVMPELLPVPLAMPRPTNMSSSRRNLDDF
DTYDSLQMLLKYLRAKNMETEQQQASFLDH
BO16586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PVRAP-PA | 474 | CG32406-PA | 1..474 | 1..474 | 2424 | 100 | Plus |
CG33993-PA | 421 | CG33993-PA | 133..421 | 183..468 | 686 | 51.9 | Plus |
CG33993-PB | 258 | CG33993-PB | 3..258 | 214..468 | 557 | 49.1 | Plus |
CG10479-PA | 378 | CG10479-PA | 238..377 | 331..469 | 241 | 44.1 | Plus |
CG10479-PB | 379 | CG10479-PB | 239..378 | 331..469 | 241 | 44.1 | Plus |