Clone BO16590 Report

Search the DGRC for BO16590

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:165
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG7084-RB
Protein status:BO16590.pep: validated full length
Sequenced Size:1825

Clone Sequence Records

BO16590.3prime Sequence

791 bp (674 high quality bases) assembled on 2006-10-13

> BO16590.3prime
ATGGTCTAGAAAGCTTGCTGGCGCCGTCTCCGAGCGTCTGAGCCTGGTTA
ACTCCGGATGGGATGACAGCTTGTCGTCCTTCTCCGCCGCCTGCGGCGGT
TTCGGCAGACTGAAGAATTTATCGTGTTTGCCAAAGTGACCCGCCTCCTC
CATGGTGTCCGGCAGCTTCTTGTGCAGGGTCTCCGGCAGGAAGAGAGCTC
CAATGCCGCCCAGCAGAAAGAGAACGCCCAGGATGTAGTAAGGTGCCCGG
ATGTCCACGGTGGTGCCCAGGTAGACCAAGTACGGGGCCAGGACTCCGAT
AGCGTTGGCCAGAATGGTGCCCAACGCCACGCCCGTTTGTCGCATGCACG
TGGGATAGATCTCCAGGCACTGCAGGTTCACCGTGAAAAAGGTGAGCGCG
TTGAGGAACTTGATGAACGTGGCCAGGTAGATCATGAGGTTCTCGTACCG
CTCATCCGTCGAATACACAATGATGGGCAGGCAGGTGACGAACGAGATGA
GGAAGGATACGGAGTTGGTGAACCGCCTGCCGTACGTATCGCCCATATAG
CGGCCCACGACGTAGGCGGGTATTTCCACAATGCTCTGGTATAAAAAGTT
CAGGAACGGATTGCCCGCCATGCGGGAACTGAAGAGCACCAGCGTGAAAT
AGGAGACGGCCACCACGCACCAGCTAAATCCCATGATGGTGGTGTTGCGT
GCCAGCCCGCCACCAGCAAAGAGCGACGCAATGCCATAGGTGACGTCCTG
CTTGTCCCGACTGTAGATCTCCGCCAATTCCTTTTCGGTCA

BO16590.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-PB 1794 CG7084-RB 1019..1791 791..19 3790 99.6 Minus
CG7084-PA 1794 CG7084-RA 1019..1791 791..19 3790 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 2809 CG7084-RE 1864..2636 791..19 3820 99.7 Minus
CG7084-RF 3810 CG7084-RF 2276..3048 791..19 3820 99.7 Minus
CG7084-RC 2460 CG7084-RC 1515..2287 791..19 3820 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22302758..22303180 543..121 2115 100 Minus
3R 32079331 3R 22302541..22302670 671..542 650 100 Minus
3R 32079331 3R 22302151..22302274 791..668 575 97.6 Minus
3R 32079331 3R 22303557..22303658 120..19 510 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:25:03 has no hits.

BO16590.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:16 Download gff for BO16590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-PA 1020..1794 16..790 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:34:14 Download gff for BO16590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RB 1500..2275 15..790 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:11:53 Download gff for BO16590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RC 1516..2291 15..790 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:11:53 Download gff for BO16590.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22302152..22302271 671..790 98 -> Minus
3R 22302542..22302669 543..670 100 -> Minus
3R 22302759..22303180 121..542 100 -> Minus
3R 22303557..22303662 15..120 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:34:14 Download gff for BO16590.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18127874..18127993 671..790 98 -> Minus
arm_3R 18128264..18128391 543..670 100 -> Minus
arm_3R 18128481..18128902 121..542 100 -> Minus
arm_3R 18129279..18129384 15..120 98   Minus

BO16590.5prime Sequence

809 bp (648 high quality bases) assembled on 2006-10-13

> BO16590.5prime
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGAAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTTCTTC

BO16590.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-PB 1794 CG7084-RB 1..788 17..804 3915 99.8 Plus
CG7084-PA 1794 CG7084-RA 1..788 17..804 3915 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 2809 CG7084-RE 846..1633 17..804 3925 99.9 Plus
CG7084-RF 3810 CG7084-RF 1258..2045 17..804 3925 99.9 Plus
CG7084-RC 2460 CG7084-RC 497..1284 17..804 3925 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22300339..22300646 17..324 1540 100 Plus
3R 32079331 3R 22301464..22301641 604..781 875 99.4 Plus
3R 32079331 3R 22301228..22301392 439..603 825 100 Plus
3R 32079331 3R 22300704..22300819 325..440 580 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:56:01 has no hits.

BO16590.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:16 Download gff for BO16590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-PA 1..792 17..809 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:15:20 Download gff for BO16590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RB 466..1272 6..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:48 Download gff for BO16590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7084-RC 482..1288 6..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:48 Download gff for BO16590.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22301464..22301640 604..780 99 -> Plus
3R 22301705..22301732 781..809 96   Plus
3R 22300324..22300646 6..324 98 -> Plus
3R 22300704..22300819 325..440 100 -> Plus
3R 22301230..22301392 441..603 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:15:20 Download gff for BO16590.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18126046..18126368 6..324 98 -> Plus
arm_3R 18126426..18126541 325..440 100 -> Plus
arm_3R 18126952..18127114 441..603 100 -> Plus
arm_3R 18127186..18127362 604..780 99 -> Plus
arm_3R 18127427..18127454 781..809 96   Plus

BO16590.complete Sequence

1825 bp assembled on 2006-12-18

GenBank Submission: FJ633871

> BO16590.complete
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTCTTCCAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTG
CTGTACTGGTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGAT
ACCCACAGCGATGGTTCTGCTTTTTTCCAAATACGTCATCGAATCGCCTC
GATGGTTGATTAGCAAACAGCGCTTCCGCGAGGCCATTGTCCAACTGCAG
AAGATAGCCAAAATTAACGGTCATCGCTTCGACATGACCGAAAAGGAATT
GGCGGAGATCTACAGTCGGGACAAGCAGGACGTCACCTATGGCATTGCGT
CGCTCTTTGCTGGTTGGCGGCTGGCACGCAACACCACCATCATGGGATTT
AGCTGGTGCGTGGTGGCCGTCTCCTATTTCACGCTGGTGCTCTTCAGTTC
CCGCATGGCGGGCAATCCGTTCCTGAACTTTTTATACCAGAGCATTGTGG
AAATACCCGCCTACGTCGTGGGCCGCTATATGGGCGATACGTACGGCAGG
CGGTTCACCAACTCCGTATCCTTCCTCATCTCGTTCGTCACCTGCCTGCC
CATCATTGTGTATTCGACGGATGAGCGGTACGAGAACCTCATGATCTACC
TGGCCACGTTCATCAAGTTCCTCAACGCGCTCACCTTTTTCACGGTGAAC
CTGCAGTGCCTGGAGATCTATCCCACGTGCATGCGACAAACGGGCGTGGC
GTTGGGCACCATTCTGGCCAACGCTATCGGAGTCCTGGCCCCGTACTTGG
TCTACCTGGGCACCACCGTGGACATCCGGGCACCTTACTACATCCTGGGC
GTTCTCTTTCTGCTGGGCGGCATTGGAGCTCTCTTCCTGCCGGAGACCCT
GCACAAGAAGCTGCCGGACACCATGGAGGAGGCGGGTCACTTTGGCAAAC
ACGATAAATTCTTCAGTCTGCCGAAACCGCCGCAGGCGGCGGAGAAGGAC
GACAAGCTGTCATCCCATCCGGAGTTAACCAGGCTCAGACGCTCGGAGAC
GGCGCCAGCAAGCTTTCTAGACCAT

BO16590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 1794 CG7084-PE 1..1791 17..1807 8955 100 Plus
CG7084-RF 1794 CG7084-PF 1..1791 17..1807 8955 100 Plus
CG7084-RC 1794 CG7084-PC 1..1791 17..1807 8955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-RE 2809 CG7084-RE 846..2636 17..1807 8955 100 Plus
CG7084-RF 3810 CG7084-RF 1258..3048 17..1807 8955 100 Plus
CG7084-RC 2460 CG7084-RC 497..2287 17..1807 8955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22302758..22303180 1283..1705 2115 100 Plus
3R 32079331 3R 22300339..22300646 17..324 1540 100 Plus
3R 32079331 3R 22302047..22302274 931..1158 1140 100 Plus
3R 32079331 3R 22301464..22301641 604..781 890 100 Plus
3R 32079331 3R 22301228..22301392 439..603 825 100 Plus
3R 32079331 3R 22301705..22301862 781..938 760 98.7 Plus
3R 32079331 3R 22302541..22302670 1155..1284 650 100 Plus
3R 32079331 3R 22300704..22300819 325..440 580 100 Plus
3R 32079331 3R 22303557..22303658 1706..1807 510 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:30 has no hits.

BO16590.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:30 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RA 1..1794 17..1810 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:50 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RA 340..2149 6..1811 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:09 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RB 481..2271 17..1809 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:30 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RA 340..2149 6..1811 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:16 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
CG7084-RC 497..2287 17..1809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:16 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22300339..22300646 17..324 100 -> Plus
3R 22300704..22300819 325..440 100 -> Plus
3R 22301230..22301392 441..603 100 -> Plus
3R 22301464..22301640 604..780 100 -> Plus
3R 22301705..22301854 781..930 100 -> Plus
3R 22302047..22302271 931..1155 100 -> Plus
3R 22302542..22302669 1156..1283 100 -> Plus
3R 22302759..22303180 1284..1705 100 -> Plus
3R 22303557..22303658 1706..1809 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:09 Download gff for BO16590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18128264..18128391 1156..1283 100 -> Plus
arm_3R 18126952..18127114 441..603 100 -> Plus
arm_3R 18127186..18127362 604..780 100 -> Plus
arm_3R 18127427..18127576 781..930 100 -> Plus
arm_3R 18126061..18126368 17..324 100 -> Plus
arm_3R 18126426..18126541 325..440 100 -> Plus
arm_3R 18127769..18127993 931..1155 100 -> Plus
arm_3R 18128481..18128902 1284..1705 100 -> Plus
arm_3R 18129279..18129380 1706..1809 98   Plus

BO16590.pep Sequence

Translation from 16 to 1825

> BO16590.pep
MRDKKEQANSRKASQVSGHFSQMDVDDSEFNDPFQALMEKAGNHGRYQTL
YNFVFVGGLAFSGAMIYMNIILALNIPDHWCTVPGRENTNFSLEEWRDIT
LPKQADNRGRKTFSNCEMFQMNFSEITDWSAWNSNLTKTTEACQNGWSYD
KTWYESTIPTDHNWVCAKDLFVTNVFVVGRVTEVAGSFILGQMGDSYGRR
FVYYISVVFCSLGRLGSIMCTSSYTWFLIMSGIVGLTVNSLFQSPQIIGM
EISREEDRSRIAFFQSCGWSIGTTLMPLLYWWLRHWDSFMWLTSIPTAMV
LLFSKYVIESPRWLISKQRFREAIVQLQKIAKINGHRFDMTEKELAEIYS
RDKQDVTYGIASLFAGWRLARNTTIMGFSWCVVAVSYFTLVLFSSRMAGN
PFLNFLYQSIVEIPAYVVGRYMGDTYGRRFTNSVSFLISFVTCLPIIVYS
TDERYENLMIYLATFIKFLNALTFFTVNLQCLEIYPTCMRQTGVALGTIL
ANAIGVLAPYLVYLGTTVDIRAPYYILGVLFLLGGIGALFLPETLHKKLP
DTMEEAGHFGKHDKFFSLPKPPQAAEKDDKLSSHPELTRLRRSETAPASF
LDH

BO16590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7084-PE 597 CG7084-PE 1..597 1..597 3168 100 Plus
CG7084-PF 597 CG7084-PF 1..597 1..597 3168 100 Plus
CG7084-PC 597 CG7084-PC 1..597 1..597 3168 100 Plus
CG7084-PB 597 CG7084-PB 1..597 1..597 3168 100 Plus
CG9317-PC 674 CG9317-PC 26..604 21..595 602 27.9 Plus