Clone Sequence Records
BO16590.3prime Sequence
791 bp (674 high quality bases) assembled on 2006-10-13
> BO16590.3prime
ATGGTCTAGAAAGCTTGCTGGCGCCGTCTCCGAGCGTCTGAGCCTGGTTA
ACTCCGGATGGGATGACAGCTTGTCGTCCTTCTCCGCCGCCTGCGGCGGT
TTCGGCAGACTGAAGAATTTATCGTGTTTGCCAAAGTGACCCGCCTCCTC
CATGGTGTCCGGCAGCTTCTTGTGCAGGGTCTCCGGCAGGAAGAGAGCTC
CAATGCCGCCCAGCAGAAAGAGAACGCCCAGGATGTAGTAAGGTGCCCGG
ATGTCCACGGTGGTGCCCAGGTAGACCAAGTACGGGGCCAGGACTCCGAT
AGCGTTGGCCAGAATGGTGCCCAACGCCACGCCCGTTTGTCGCATGCACG
TGGGATAGATCTCCAGGCACTGCAGGTTCACCGTGAAAAAGGTGAGCGCG
TTGAGGAACTTGATGAACGTGGCCAGGTAGATCATGAGGTTCTCGTACCG
CTCATCCGTCGAATACACAATGATGGGCAGGCAGGTGACGAACGAGATGA
GGAAGGATACGGAGTTGGTGAACCGCCTGCCGTACGTATCGCCCATATAG
CGGCCCACGACGTAGGCGGGTATTTCCACAATGCTCTGGTATAAAAAGTT
CAGGAACGGATTGCCCGCCATGCGGGAACTGAAGAGCACCAGCGTGAAAT
AGGAGACGGCCACCACGCACCAGCTAAATCCCATGATGGTGGTGTTGCGT
GCCAGCCCGCCACCAGCAAAGAGCGACGCAATGCCATAGGTGACGTCCTG
CTTGTCCCGACTGTAGATCTCCGCCAATTCCTTTTCGGTCA
BO16590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-PB | 1794 | CG7084-RB | 1019..1791 | 791..19 | 3790 | 99.6 | Minus |
CG7084-PA | 1794 | CG7084-RA | 1019..1791 | 791..19 | 3790 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 2809 | CG7084-RE | 1864..2636 | 791..19 | 3820 | 99.7 | Minus |
CG7084-RF | 3810 | CG7084-RF | 2276..3048 | 791..19 | 3820 | 99.7 | Minus |
CG7084-RC | 2460 | CG7084-RC | 1515..2287 | 791..19 | 3820 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22302758..22303180 | 543..121 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 22302541..22302670 | 671..542 | 650 | 100 | Minus |
3R | 32079331 | 3R | 22302151..22302274 | 791..668 | 575 | 97.6 | Minus |
3R | 32079331 | 3R | 22303557..22303658 | 120..19 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:25:03 has no hits.
BO16590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:16 Download gff for
BO16590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-PA | 1020..1794 | 16..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:34:14 Download gff for
BO16590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RB | 1500..2275 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:11:53 Download gff for
BO16590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RC | 1516..2291 | 15..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:11:53 Download gff for
BO16590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22302152..22302271 | 671..790 | 98 | -> | Minus |
3R | 22302542..22302669 | 543..670 | 100 | -> | Minus |
3R | 22302759..22303180 | 121..542 | 100 | -> | Minus |
3R | 22303557..22303662 | 15..120 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:34:14 Download gff for
BO16590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18127874..18127993 | 671..790 | 98 | -> | Minus |
arm_3R | 18128264..18128391 | 543..670 | 100 | -> | Minus |
arm_3R | 18128481..18128902 | 121..542 | 100 | -> | Minus |
arm_3R | 18129279..18129384 | 15..120 | 98 | | Minus |
BO16590.5prime Sequence
809 bp (648 high quality bases) assembled on 2006-10-13
> BO16590.5prime
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGAAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTTCTTC
BO16590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:22:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-PB | 1794 | CG7084-RB | 1..788 | 17..804 | 3915 | 99.8 | Plus |
CG7084-PA | 1794 | CG7084-RA | 1..788 | 17..804 | 3915 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 2809 | CG7084-RE | 846..1633 | 17..804 | 3925 | 99.9 | Plus |
CG7084-RF | 3810 | CG7084-RF | 1258..2045 | 17..804 | 3925 | 99.9 | Plus |
CG7084-RC | 2460 | CG7084-RC | 497..1284 | 17..804 | 3925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22300339..22300646 | 17..324 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 22301464..22301641 | 604..781 | 875 | 99.4 | Plus |
3R | 32079331 | 3R | 22301228..22301392 | 439..603 | 825 | 100 | Plus |
3R | 32079331 | 3R | 22300704..22300819 | 325..440 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:56:01 has no hits.
BO16590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:16 Download gff for
BO16590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:15:20 Download gff for
BO16590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RB | 466..1272 | 6..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:48 Download gff for
BO16590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RC | 482..1288 | 6..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:48 Download gff for
BO16590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22301464..22301640 | 604..780 | 99 | -> | Plus |
3R | 22301705..22301732 | 781..809 | 96 | | Plus |
3R | 22300324..22300646 | 6..324 | 98 | -> | Plus |
3R | 22300704..22300819 | 325..440 | 100 | -> | Plus |
3R | 22301230..22301392 | 441..603 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:15:20 Download gff for
BO16590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18126046..18126368 | 6..324 | 98 | -> | Plus |
arm_3R | 18126426..18126541 | 325..440 | 100 | -> | Plus |
arm_3R | 18126952..18127114 | 441..603 | 100 | -> | Plus |
arm_3R | 18127186..18127362 | 604..780 | 99 | -> | Plus |
arm_3R | 18127427..18127454 | 781..809 | 96 | | Plus |
BO16590.complete Sequence
1825 bp assembled on 2006-12-18
GenBank Submission: FJ633871
> BO16590.complete
GAAGTTATCAGTCGACATGAGAGACAAGAAGGAACAGGCGAACAGCCGCA
AGGCCTCCCAAGTCTCGGGACACTTTTCCCAAATGGACGTGGACGACTCG
GAGTTCAACGATCCCTTCCAGGCTCTGATGGAGAAGGCTGGCAACCATGG
ACGGTATCAAACCCTATACAATTTCGTATTTGTCGGCGGTTTGGCCTTCA
GCGGTGCTATGATCTACATGAACATCATCCTGGCCCTCAATATACCCGAT
CACTGGTGCACAGTGCCAGGTAGGGAAAACACCAACTTTTCACTCGAGGA
GTGGCGGGACATTACCCTGCCCAAACAGGCTGACAACCGAGGAAGGAAGA
CGTTCAGCAACTGTGAAATGTTTCAAATGAACTTCTCAGAGATCACGGAC
TGGTCAGCTTGGAATAGCAATCTGACAAAAACAACAGAAGCCTGCCAGAA
CGGCTGGAGTTACGACAAGACCTGGTACGAGAGCACCATCCCCACGGACC
ACAACTGGGTGTGCGCCAAGGATTTGTTCGTGACAAATGTGTTCGTGGTG
GGTCGTGTGACGGAGGTGGCCGGTTCATTTATATTGGGACAAATGGGCGA
CTCCTACGGTCGCAGGTTTGTGTACTACATCAGCGTGGTCTTCTGCTCCC
TGGGACGTCTTGGGTCCATCATGTGCACCAGCTCATACACATGGTTCCTT
ATCATGTCCGGCATCGTGGGCCTCACTGTGAACAGCCTCTTCCAATCGCC
TCAAATTATCGGCATGGAAATCTCGCGGGAGGAGGACCGGAGTCGAATTG
CCTTCTTCCAGAGCTGCGGCTGGTCCATCGGCACCACCCTAATGCCTCTG
CTGTACTGGTGGCTACGCCACTGGGACTCCTTCATGTGGCTCACCTCGAT
ACCCACAGCGATGGTTCTGCTTTTTTCCAAATACGTCATCGAATCGCCTC
GATGGTTGATTAGCAAACAGCGCTTCCGCGAGGCCATTGTCCAACTGCAG
AAGATAGCCAAAATTAACGGTCATCGCTTCGACATGACCGAAAAGGAATT
GGCGGAGATCTACAGTCGGGACAAGCAGGACGTCACCTATGGCATTGCGT
CGCTCTTTGCTGGTTGGCGGCTGGCACGCAACACCACCATCATGGGATTT
AGCTGGTGCGTGGTGGCCGTCTCCTATTTCACGCTGGTGCTCTTCAGTTC
CCGCATGGCGGGCAATCCGTTCCTGAACTTTTTATACCAGAGCATTGTGG
AAATACCCGCCTACGTCGTGGGCCGCTATATGGGCGATACGTACGGCAGG
CGGTTCACCAACTCCGTATCCTTCCTCATCTCGTTCGTCACCTGCCTGCC
CATCATTGTGTATTCGACGGATGAGCGGTACGAGAACCTCATGATCTACC
TGGCCACGTTCATCAAGTTCCTCAACGCGCTCACCTTTTTCACGGTGAAC
CTGCAGTGCCTGGAGATCTATCCCACGTGCATGCGACAAACGGGCGTGGC
GTTGGGCACCATTCTGGCCAACGCTATCGGAGTCCTGGCCCCGTACTTGG
TCTACCTGGGCACCACCGTGGACATCCGGGCACCTTACTACATCCTGGGC
GTTCTCTTTCTGCTGGGCGGCATTGGAGCTCTCTTCCTGCCGGAGACCCT
GCACAAGAAGCTGCCGGACACCATGGAGGAGGCGGGTCACTTTGGCAAAC
ACGATAAATTCTTCAGTCTGCCGAAACCGCCGCAGGCGGCGGAGAAGGAC
GACAAGCTGTCATCCCATCCGGAGTTAACCAGGCTCAGACGCTCGGAGAC
GGCGCCAGCAAGCTTTCTAGACCAT
BO16590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 1794 | CG7084-PE | 1..1791 | 17..1807 | 8955 | 100 | Plus |
CG7084-RF | 1794 | CG7084-PF | 1..1791 | 17..1807 | 8955 | 100 | Plus |
CG7084-RC | 1794 | CG7084-PC | 1..1791 | 17..1807 | 8955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-RE | 2809 | CG7084-RE | 846..2636 | 17..1807 | 8955 | 100 | Plus |
CG7084-RF | 3810 | CG7084-RF | 1258..3048 | 17..1807 | 8955 | 100 | Plus |
CG7084-RC | 2460 | CG7084-RC | 497..2287 | 17..1807 | 8955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22302758..22303180 | 1283..1705 | 2115 | 100 | Plus |
3R | 32079331 | 3R | 22300339..22300646 | 17..324 | 1540 | 100 | Plus |
3R | 32079331 | 3R | 22302047..22302274 | 931..1158 | 1140 | 100 | Plus |
3R | 32079331 | 3R | 22301464..22301641 | 604..781 | 890 | 100 | Plus |
3R | 32079331 | 3R | 22301228..22301392 | 439..603 | 825 | 100 | Plus |
3R | 32079331 | 3R | 22301705..22301862 | 781..938 | 760 | 98.7 | Plus |
3R | 32079331 | 3R | 22302541..22302670 | 1155..1284 | 650 | 100 | Plus |
3R | 32079331 | 3R | 22300704..22300819 | 325..440 | 580 | 100 | Plus |
3R | 32079331 | 3R | 22303557..22303658 | 1706..1807 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:30 has no hits.
BO16590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:30 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RA | 1..1794 | 17..1810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:50 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RA | 340..2149 | 6..1811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:09 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RB | 481..2271 | 17..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:30 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RA | 340..2149 | 6..1811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:16 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7084-RC | 497..2287 | 17..1809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:16 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22300339..22300646 | 17..324 | 100 | -> | Plus |
3R | 22300704..22300819 | 325..440 | 100 | -> | Plus |
3R | 22301230..22301392 | 441..603 | 100 | -> | Plus |
3R | 22301464..22301640 | 604..780 | 100 | -> | Plus |
3R | 22301705..22301854 | 781..930 | 100 | -> | Plus |
3R | 22302047..22302271 | 931..1155 | 100 | -> | Plus |
3R | 22302542..22302669 | 1156..1283 | 100 | -> | Plus |
3R | 22302759..22303180 | 1284..1705 | 100 | -> | Plus |
3R | 22303557..22303658 | 1706..1809 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:09 Download gff for
BO16590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18128264..18128391 | 1156..1283 | 100 | -> | Plus |
arm_3R | 18126952..18127114 | 441..603 | 100 | -> | Plus |
arm_3R | 18127186..18127362 | 604..780 | 100 | -> | Plus |
arm_3R | 18127427..18127576 | 781..930 | 100 | -> | Plus |
arm_3R | 18126061..18126368 | 17..324 | 100 | -> | Plus |
arm_3R | 18126426..18126541 | 325..440 | 100 | -> | Plus |
arm_3R | 18127769..18127993 | 931..1155 | 100 | -> | Plus |
arm_3R | 18128481..18128902 | 1284..1705 | 100 | -> | Plus |
arm_3R | 18129279..18129380 | 1706..1809 | 98 | | Plus |
BO16590.pep Sequence
Translation from 16 to 1825
> BO16590.pep
MRDKKEQANSRKASQVSGHFSQMDVDDSEFNDPFQALMEKAGNHGRYQTL
YNFVFVGGLAFSGAMIYMNIILALNIPDHWCTVPGRENTNFSLEEWRDIT
LPKQADNRGRKTFSNCEMFQMNFSEITDWSAWNSNLTKTTEACQNGWSYD
KTWYESTIPTDHNWVCAKDLFVTNVFVVGRVTEVAGSFILGQMGDSYGRR
FVYYISVVFCSLGRLGSIMCTSSYTWFLIMSGIVGLTVNSLFQSPQIIGM
EISREEDRSRIAFFQSCGWSIGTTLMPLLYWWLRHWDSFMWLTSIPTAMV
LLFSKYVIESPRWLISKQRFREAIVQLQKIAKINGHRFDMTEKELAEIYS
RDKQDVTYGIASLFAGWRLARNTTIMGFSWCVVAVSYFTLVLFSSRMAGN
PFLNFLYQSIVEIPAYVVGRYMGDTYGRRFTNSVSFLISFVTCLPIIVYS
TDERYENLMIYLATFIKFLNALTFFTVNLQCLEIYPTCMRQTGVALGTIL
ANAIGVLAPYLVYLGTTVDIRAPYYILGVLFLLGGIGALFLPETLHKKLP
DTMEEAGHFGKHDKFFSLPKPPQAAEKDDKLSSHPELTRLRRSETAPASF
LDH
BO16590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7084-PE | 597 | CG7084-PE | 1..597 | 1..597 | 3168 | 100 | Plus |
CG7084-PF | 597 | CG7084-PF | 1..597 | 1..597 | 3168 | 100 | Plus |
CG7084-PC | 597 | CG7084-PC | 1..597 | 1..597 | 3168 | 100 | Plus |
CG7084-PB | 597 | CG7084-PB | 1..597 | 1..597 | 3168 | 100 | Plus |
CG9317-PC | 674 | CG9317-PC | 26..604 | 21..595 | 602 | 27.9 | Plus |