Clone Sequence Records
BO16641.3prime Sequence
308 bp (308 high quality bases) assembled on 2006-10-13
> BO16641.3prime
ATGGTCTAGAAAGCTTGCATTGCGGCAAACGCAGACGGCCTTGTCGTTGC
AGTAGCCGCCTTTGAACCCCTTGGCAATGCAGTGGCCGGCGCAGGCGGTG
TGGTTCCAGTTCCACTTGGAGAGTAGGTCGCATGTGGCTCGCTTCTGGCG
GCTATGCTGCAGCACCTCCTGGTGGGCATCCTCATGCACCAGGACATGAT
CCTCTGGAATTGGATCCACATCGGAAACTGGCTGAGCCTGCGCCACGCAA
GCAAGCAGAGCAAAAGCGATAGCCACGAGAACGAAGAACTTCATGTCGAC
TGATAACT
BO16641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1385-PA | 279 | Def-RA | 1..276 | 294..19 | 1380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Def-RA | 399 | CG1385-RA | 10..285 | 294..19 | 1380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10054292..10054567 | 19..294 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:44:21 has no hits.
BO16641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:21 Download gff for
BO16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1385-PA | 1..279 | 16..294 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:31 Download gff for
BO16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 10..285 | 19..294 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:52 Download gff for
BO16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 10..285 | 19..294 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:52 Download gff for
BO16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10054292..10054567 | 19..294 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:31 Download gff for
BO16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5941797..5942072 | 19..294 | 100 | | Plus |
BO16641.5prime Sequence
308 bp (308 high quality bases) assembled on 2006-10-13
> BO16641.5prime
GAAGTTATCAGTCGACATGAAGTTCTTCGTTCTCGTGGCTATCGCTTTTG
CTCTGCTTGCTTGCGTGGCGCAGGCTCAGCCAGTTTCCGATGTGGATCCA
ATTCCAGAGGATCATGTCCTGGTGCATGAGGATGCCCACCAGGAGGTGCT
GCAGCATAGCCGCCAGAAGCGAGCCACATGCGACCTACTCTCCAAGTGGA
ACTGGAACCACACCGCCTGCGCCGGCCACTGCATTGCCAAGGGGTTCAAA
GGCGGCTACTGCAACGACAAGGCCGTCTGCGTTTGCCGCAATGCAAGCTT
TCTAGACC
BO16641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1385-PA | 279 | Def-RA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Def-RA | 399 | CG1385-RA | 10..285 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10054292..10054567 | 292..17 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:40:24 has no hits.
BO16641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:21 Download gff for
BO16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1385-PA | 1..279 | 17..295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:02 Download gff for
BO16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 10..285 | 17..292 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:29 Download gff for
BO16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 10..285 | 17..292 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:47:29 Download gff for
BO16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10054292..10054567 | 17..292 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:02 Download gff for
BO16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5941797..5942072 | 17..292 | 100 | | Minus |
BO16641.complete Sequence
310 bp assembled on 2006-10-11
GenBank Submission: FJ633872
> BO16641.complete
GAAGTTATCAGTCGACATGAAGTTCTTCGTTCTCGTGGCTATCGCTTTTG
CTCTGCTTGCTTGCGTGGCGCAGGCTCAGCCAGTTTCCGATGTGGATCCA
ATTCCAGAGGATCATGTCCTGGTGCATGAGGATGCCCACCAGGAGGTGCT
GCAGCATAGCCGCCAGAAGCGAGCCACATGCGACCTACTCTCCAAGTGGA
ACTGGAACCACACCGCCTGCGCCGGCCACTGCATTGCCAAGGGGTTCAAA
GGCGGCTACTGCAACGACAAGGCCGTCTGCGTTTGCCGCAATGCAAGCTT
TCTAGACCAT
BO16641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Def-RA | 279 | CG1385-PA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Def-RA | 399 | CG1385-RA | 10..285 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10054292..10054567 | 292..17 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:15:34 has no hits.
BO16641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:13 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 1..279 | 17..295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:17 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 1..279 | 17..295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:07 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 10..285 | 17..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:14 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 1..279 | 17..295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:45 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Def-RA | 10..285 | 17..294 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:45 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10054289..10054567 | 17..294 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:07 Download gff for
BO16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5941794..5942072 | 17..294 | 99 | | Minus |
BO16641.pep Sequence
Translation from 16 to 310
> BO16641.pep
MKFFVLVAIAFALLACVAQAQPVSDVDPIPEDHVLVHEDAHQEVLQHSRQ
KRATCDLLSKWNWNHTACAGHCIAKGFKGGYCNDKAVCVCRNASFLDH
BO16641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Def-PA | 92 | CG1385-PA | 1..92 | 1..92 | 509 | 100 | Plus |