Clone Sequence Records
BO16646.3prime Sequence
725 bp (642 high quality bases) assembled on 2006-10-13
> BO16646.3prime
ATGGTCTAGAAAGCTTGCAAGCTGTTCAATAGCATTTAAGATCCAAGGTT
TCAGCTCAGCCACATTGGCGTAGACTCCGGGAAAGAACGGATTGGCGCAT
CCAATGCCGTAGGAGACAATGCCAACTAGTTGGCCACCGGAGACGAGAGG
TCCGCCGGAGTCTCCATGACAGGAATCTTTTAAGAGAGCGGCGGCGCAAA
TCATAGTTTTGGTGATGTACTGATAGGACCGCTTACAAACATTCGGGTCT
AGTATTTTCACTGAGGTTTTCAATAGAGATGTAGGTTGTAGCCAGAGGAT
TCCGATTTCTCCCCAACCAGAAACCGAAGCTTCAGTTCCAGCTGCGGGTG
CACTATCGGCCAGTTGGATAGGTCTTACTTCGGCATTGAAAATTAGAGTG
TCCACCAGTCTAATTACGGCTATATCGTTGAACAAAATGGTGGAAGATAC
GTAGTCTTCATGCTTCCGAATTACAGCAACCCTGGCGTGCTGTCCACCCA
AGTTTTTCCATACGGATCCAACTCTGACGGAATACAGTGTATCGAAGGGT
CTTTCAACACAGTGGGCTGCTGTTATAATGATCTTGTCACTGTAGATAAC
TGCACCGCAAATGTATTTTTCCGAATACATGAGAGCCGCCTGCCCAGGAA
CTTCTGAAATAAGCACAGGGTGGCCACCCACTATTCGCTCCGGAGAGGAT
CCTGCCGAGATCAGGGTGACGCTGG
BO16646.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17240-PA | 738 | Ser12-RA | 29..735 | 725..19 | 3485 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 845 | CG17240-RA | 34..740 | 725..19 | 3505 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2250536..2251242 | 19..725 | 3505 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:50:28 has no hits.
BO16646.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:27 Download gff for
BO16646.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17240-PA | 29..738 | 15..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:37 Download gff for
BO16646.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 34..744 | 14..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:34 Download gff for
BO16646.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 34..744 | 14..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:34 Download gff for
BO16646.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2250532..2251242 | 14..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:37 Download gff for
BO16646.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2250532..2251242 | 14..725 | 99 | | Plus |
BO16646.5prime Sequence
747 bp (700 high quality bases) assembled on 2006-10-13
> BO16646.5prime
GAAGTTATCAGTCGACATGCTCCTCCACTGGCTTGTTCTGGTCGCCAGCG
TCACCCTGATCTCGGCAGGATCTTCTCCGGAGCGAATAGTGGGTGGCCAC
CCTGTGCTTATTTCAGAAGTTCCTTGGCAGGCGGCTCTCATGTATTCGGA
AAAATACATTTGCGGTGCAGTTATCTACAGTGACAAGATCATTATAACAG
CAGCCCACTGTGTTGAAAGACCCTTCGATACACTGTATTCCGTCAGAGTT
GGATCCGTATGGAAAAACTTGGGTGGACAGCACGCCAGGGTTGCTGTAAT
TCGGAAGCATGAAGACTACGTATCTTCCACCATTTTGTTCAACGATATAG
CCGTAATTAGACTGGTGGACACTCTAATTTTCAATGCCGAAGTAAGACCT
ATCCAACTGGCCGATAGTGCACCCGCAGCTGGAACTGAAGCTTCGGTTTC
TGGTTGGGGAGAAATCGGAATCCTCTGGCTACAACCTACATCTCTATTGA
AAACCTCAGTGAAAATACTAGACCCGAATGTTTGTAAGCGGTCCTATCAG
TACATCACCAAAACTATGATTTGCGCCGCCGCTCTCTTAAAAGATTCCTG
TCATGGAGACTCCGGCGGACCTCTCGTCTCCGGTGGCCAACTAGTTGGCA
TTGTCTCCTACGGCATTGGATGCGCCAATCCGTTCTTTCTCGGAGTCTAC
GCCAATGTGGCTGAGCTGAAACCTTGAATCTTAAATGCTATTGAACA
BO16646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17240-PA | 738 | Ser12-RA | 1..731 | 17..747 | 3605 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 845 | CG17240-RA | 6..736 | 17..747 | 3625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2250540..2251270 | 747..17 | 3625 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:58 has no hits.
BO16646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:27 Download gff for
BO16646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17240-PA | 1..730 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:14 Download gff for
BO16646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..735 | 12..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:17 Download gff for
BO16646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..735 | 12..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:17 Download gff for
BO16646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2250541..2251275 | 8..746 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:14 Download gff for
BO16646.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2250541..2251275 | 8..746 | 99 | | Minus |
BO16646.complete Sequence
769 bp assembled on 2006-10-11
GenBank Submission: FJ633873
> BO16646.complete
GAAGTTATCAGTCGACATGCTCCTCCACTGGCTTGTTCTGGTCGCCAGCG
TCACCCTGATCTCGGCAGGATCTTCTCCGGAGCGAATAGTGGGTGGCCAC
CCTGTGCTTATTTCAGAAGTTCCTTGGCAGGCGGCTCTCATGTATTCGGA
AAAATACATTTGCGGTGCAGTTATCTACAGTGACAAGATCATTATAACAG
CAGCCCACTGTGTTGAAAGACCCTTCGATACACTGTATTCCGTCAGAGTT
GGATCCGTATGGAAAAACTTGGGTGGACAGCACGCCAGGGTTGCTGTAAT
TCGGAAGCATGAAGACTACGTATCTTCCACCATTTTGTTCAACGATATAG
CCGTAATTAGACTGGTGGACACTCTAATTTTCAATGCCGAAGTAAGACCT
ATCCAACTGGCCGATAGTGCACCCGCAGCTGGAACTGAAGCTTCGGTTTC
TGGTTGGGGAGAAATCGGAATCCTCTGGCTACAACCTACATCTCTATTGA
AAACCTCAGTGAAAATACTAGACCCGAATGTTTGTAAGCGGTCCTATCAG
TACATCACCAAAACTATGATTTGCGCCGCCGCTCTCTTAAAAGATTCCTG
TCATGGAGACTCCGGCGGACCTCTCGTCTCCGGTGGCCAACTAGTTGGCA
TTGTCTCCTACGGCATTGGATGCGCCAATCCGTTCTTTCCCGGAGTCTAC
GCCAATGTGGCTGAGCTGAAACCTTGGATCTTAAATGCTATTGAACAGCT
TGCAAGCTTTCTAGACCAT
BO16646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 738 | CG17240-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-RA | 845 | CG17240-RA | 6..740 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2250536..2251270 | 751..17 | 3675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:09:58 has no hits.
BO16646.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:15 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:19 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:27 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 6..740 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:15 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:18 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser12-RA | 6..740 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:18 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2250534..2251270 | 17..753 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:27 Download gff for
BO16646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2250534..2251270 | 17..753 | 99 | | Minus |
BO16646.pep Sequence
Translation from 16 to 769
> BO16646.pep
MLLHWLVLVASVTLISAGSSPERIVGGHPVLISEVPWQAALMYSEKYICG
AVIYSDKIIITAAHCVERPFDTLYSVRVGSVWKNLGGQHARVAVIRKHED
YVSSTILFNDIAVIRLVDTLIFNAEVRPIQLADSAPAAGTEASVSGWGEI
GILWLQPTSLLKTSVKILDPNVCKRSYQYITKTMICAAALLKDSCHGDSG
GPLVSGGQLVGIVSYGIGCANPFFPGVYANVAELKPWILNAIEQLASFLD
H
BO16646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser12-PA | 245 | CG17240-PA | 1..245 | 1..245 | 1269 | 100 | Plus |
| CG17239-PB | 248 | CG17239-PB | 1..244 | 1..245 | 630 | 54.1 | Plus |
| CG17239-PA | 248 | CG17239-PA | 1..244 | 1..245 | 630 | 54.1 | Plus |
| CG30025-PA | 253 | CG30025-PA | 1..251 | 2..240 | 492 | 43.3 | Plus |
| betaTry-PB | 253 | CG18211-PB | 1..251 | 2..240 | 491 | 44.4 | Plus |
