Clone Sequence Records
BO16648.3prime Sequence
302 bp (302 high quality bases) assembled on 2006-10-13
> BO16648.3prime
ATGGTCTAGAAAGCTTGCGAAGTTCAAAGATTTGCGAGCCTTGATGAAAT
TCTTATCAGCCTCGTAAGTGTACATGCGATTCAGTTTGTTTTTGCGGCGC
TTTTTGAGTTCGGTTTGGAACTTTCCGTGTCCTGAGCTGCTGGGGGTGGC
TGGTACCAGGGAATACTTCTTGCTGTCCAGGGAGTAGCACTCGCGTTTTC
CGAACTCATGCTGCTCCTTTGGGGTTTCCACGATTTTCAGGCTGTTCAGG
CGCTGCAGCACTTGGTTGGTTTCATTTGTCGACGACATGTCGACTGATAA
CT
BO16648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17962-PA | 273 | Z600-RA | 1..270 | 288..19 | 1350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Z600-RA | 453 | CG17962-RA | 64..333 | 288..19 | 1350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15509124..15509393 | 288..19 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:03:20 has no hits.
BO16648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:29 Download gff for
BO16648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17962-PA | 1..273 | 15..288 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:27 Download gff for
BO16648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 56..336 | 15..296 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:32 Download gff for
BO16648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 56..336 | 15..296 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:32 Download gff for
BO16648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15509116..15509396 | 15..296 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:27 Download gff for
BO16648.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15502216..15502496 | 15..296 | 97 | | Minus |
BO16648.5prime Sequence
302 bp (302 high quality bases) assembled on 2006-10-13
> BO16648.5prime
GAAGTTATCAGTCGACATGTCGTCGACAAATGAAACCAACCAAGTGCTGC
AGCGCCTGAACAGCCTGAAAATCGTGGAAACCCCAAAGGAGCAGCATGAG
TTCGGAAAACGCGAGTGCTACTCCCTGGACAGCAAGAAGTATTCCCTGGT
ACCAGCCACCCCCAGCAGCTCAGGACACGGAAAGTTCCAAACCGAACTCA
AAAAGCGCCGCAAAAACAAACTGAATCGCATGTACACTTACGAGGCTGAT
AAGAATTTCATCAAGGCTCGCAAATCTTTGAACTTCGCAAGCTTTCTAGA
CC
BO16648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17962-PA | 273 | Z600-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Z600-RA | 453 | CG17962-RA | 64..333 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15509124..15509393 | 17..286 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:41:22 has no hits.
BO16648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:29 Download gff for
BO16648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17962-PA | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:05 Download gff for
BO16648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 56..336 | 9..290 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:10 Download gff for
BO16648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 56..336 | 9..290 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:10 Download gff for
BO16648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15509129..15509396 | 22..290 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:05 Download gff for
BO16648.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15502229..15502496 | 22..290 | 99 | | Plus |
BO16648.complete Sequence
304 bp assembled on 2006-10-11
GenBank Submission: FJ633874
> BO16648.complete
GAAGTTATCAGTCGACATGTCGTCGACAAATGAAACCAACCAAGTGCTGC
AGCGCCTGAACAGCCTGAAAATCGTGGAAACCCCAAAGGAGCAGCATGAG
TTCGGAAAACGCGAGTGCTACTCCCTGGACAGCAAGAAGTATTCCCTGGT
ACCAGCCACCCCCAGCAGCTCAGGACACGGAAAGTTCCAAACCGAACTCA
AAAAGCGCCGCAAAAACAAACTGAATCGCATGTACACTTACGAGGCTGAT
AAGAATTTCATCAAGGCTCGCAAATCTTTGAACTTCGCAAGCTTTCTAGA
CCAT
BO16648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Z600-RA | 273 | CG17962-PA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Z600-RA | 453 | CG17962-RA | 64..333 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15509124..15509393 | 17..286 | 1350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:19:34 has no hits.
BO16648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:17 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:20 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 56..336 | 9..290 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:28:50 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 64..333 | 17..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:17 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 56..336 | 9..290 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:50 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Z600-RA | 64..333 | 17..288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:50 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15509124..15509393 | 17..288 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:28:50 Download gff for
BO16648.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15502224..15502493 | 17..288 | 99 | | Plus |
BO16648.pep Sequence
Translation from 16 to 304
> BO16648.pep
MSSTNETNQVLQRLNSLKIVETPKEQHEFGKRECYSLDSKKYSLVPATPS
SSGHGKFQTELKKRRKNKLNRMYTYEADKNFIKARKSLNFASFLDH
BO16648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Z600-PA | 90 | CG17962-PA | 1..90 | 1..90 | 464 | 100 | Plus |
